Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2598 and Dsui_2599 are separated by 729 nucleotides Dsui_2599 and Dsui_2600 are separated by 263 nucleotides Dsui_2600 and Dsui_2601 are separated by 371 nucleotides
Dsui_2598: Dsui_2598 - hypothetical protein, at 2,753,435 to 2,754,256
_2598
Dsui_2599: Dsui_2599 - hypothetical protein, at 2,754,986 to 2,755,663
_2599
Dsui_2600: Dsui_2600 - hypothetical protein, at 2,755,927 to 2,756,136
_2600
Dsui_2601: Dsui_2601 - hypothetical protein, at 2,756,508 to 2,756,870
_2601
Position (kb)
2754
2755
2756 Strain fitness (log2 ratio)
-1
0
1 at 2754.094 kb on + strand, within Dsui_2598 at 2754.203 kb on - strand at 2754.215 kb on - strand at 2754.290 kb on + strand at 2754.293 kb on - strand at 2754.354 kb on + strand at 2754.440 kb on + strand at 2754.448 kb on - strand at 2754.502 kb on - strand at 2754.502 kb on - strand at 2754.572 kb on + strand at 2754.573 kb on - strand at 2754.573 kb on - strand at 2754.580 kb on - strand at 2754.590 kb on - strand at 2754.590 kb on - strand at 2754.648 kb on + strand at 2754.972 kb on + strand at 2755.121 kb on - strand, within Dsui_2599 at 2755.294 kb on + strand, within Dsui_2599 at 2755.504 kb on - strand, within Dsui_2599 at 2755.628 kb on + strand at 2755.695 kb on - strand at 2755.890 kb on + strand at 2755.890 kb on + strand at 2755.971 kb on + strand, within Dsui_2600 at 2755.979 kb on - strand, within Dsui_2600 at 2756.000 kb on - strand, within Dsui_2600 at 2756.008 kb on - strand, within Dsui_2600 at 2756.023 kb on + strand, within Dsui_2600 at 2756.070 kb on + strand at 2756.112 kb on + strand, within Dsui_2600 at 2756.112 kb on + strand, within Dsui_2600 at 2756.126 kb on - strand at 2756.265 kb on + strand at 2756.278 kb on + strand at 2756.323 kb on + strand at 2756.415 kb on - strand at 2756.430 kb on + strand at 2756.533 kb on + strand at 2756.583 kb on - strand, within Dsui_2601
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,754,094 + Dsui_2598 0.80 +0.7 2,754,203 - -0.8 2,754,215 - -1.6 2,754,290 + +0.7 2,754,293 - +0.7 2,754,354 + +0.7 2,754,440 + +0.7 2,754,448 - +0.7 2,754,502 - +0.7 2,754,502 - -1.6 2,754,572 + +0.7 2,754,573 - -1.3 2,754,573 - +0.7 2,754,580 - +0.7 2,754,590 - +0.7 2,754,590 - -0.8 2,754,648 + +0.7 2,754,972 + +0.7 2,755,121 - Dsui_2599 0.20 +0.7 2,755,294 + Dsui_2599 0.45 +0.7 2,755,504 - Dsui_2599 0.76 +0.7 2,755,628 + -0.3 2,755,695 - +0.7 2,755,890 + +0.7 2,755,890 + +0.7 2,755,971 + Dsui_2600 0.21 +0.7 2,755,979 - Dsui_2600 0.25 +0.7 2,756,000 - Dsui_2600 0.35 +0.7 2,756,008 - Dsui_2600 0.39 +0.7 2,756,023 + Dsui_2600 0.46 -0.8 2,756,070 + +0.7 2,756,112 + Dsui_2600 0.88 +0.7 2,756,112 + Dsui_2600 0.88 -0.3 2,756,126 - -0.3 2,756,265 + -0.8 2,756,278 + -1.6 2,756,323 + -0.3 2,756,415 - -0.8 2,756,430 + -0.8 2,756,533 + -0.2 2,756,583 - Dsui_2601 0.21 -0.8
Or see this region's nucleotide sequence