Strain Fitness in Dechlorosoma suillum PS around Dsui_1577

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1576 and Dsui_1577 are separated by 12 nucleotidesDsui_1577 and Dsui_1578 are separated by 20 nucleotides Dsui_1576: Dsui_1576 - dihydrolipoamide dehydrogenase, at 1,648,816 to 1,650,561 _1576 Dsui_1577: Dsui_1577 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 1,650,574 to 1,652,241 _1577 Dsui_1578: Dsui_1578 - pyruvate dehydrogenase E1 component, homodimeric type, at 1,652,262 to 1,654,934 _1578 Position (kb) 1650 1651 1652 1653Strain fitness (log2 ratio) -1 0 1 2at 1650.587 kb on - strandat 1651.025 kb on - strand, within Dsui_1577at 1651.469 kb on - strand, within Dsui_1577at 1652.161 kb on - strandat 1652.268 kb on + strandat 1652.292 kb on + strandat 1652.302 kb on + strandat 1652.388 kb on - strandat 1652.608 kb on - strand, within Dsui_1578at 1652.886 kb on - strand, within Dsui_1578at 1653.088 kb on + strand, within Dsui_1578at 1653.106 kb on - strand, within Dsui_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,650,587 - +1.8
1,651,025 - Dsui_1577 0.27 +2.3
1,651,469 - Dsui_1577 0.54 +2.2
1,652,161 - +2.4
1,652,268 + +0.6
1,652,292 + -0.4
1,652,302 + +0.6
1,652,388 - +2.7
1,652,608 - Dsui_1578 0.13 +2.7
1,652,886 - Dsui_1578 0.23 +2.6
1,653,088 + Dsui_1578 0.31 +0.6
1,653,106 - Dsui_1578 0.32 +2.1

Or see this region's nucleotide sequence