Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1095 and Dsui_1096 are separated by 265 nucleotides Dsui_1096 and Dsui_1097 are separated by 0 nucleotides
Dsui_1095: Dsui_1095 - 3-dehydroquinate synthase, at 1,133,903 to 1,134,997
_1095
Dsui_1096: Dsui_1096 - glutamate synthase family protein, at 1,135,263 to 1,139,960
_1096
Dsui_1097: Dsui_1097 - NADH/NADPH-dependent glutamate synthase small subunit, at 1,139,961 to 1,141,427
_1097
Position (kb)
1135
1136
1137
1138
1139
1140 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1135.017 kb on + strand at 1135.038 kb on - strand at 1135.038 kb on - strand at 1135.088 kb on - strand at 1135.112 kb on - strand at 1135.148 kb on + strand at 1135.181 kb on - strand at 1135.265 kb on + strand at 1135.265 kb on + strand at 1135.265 kb on + strand at 1135.270 kb on + strand at 1135.273 kb on - strand at 1135.273 kb on - strand at 1135.449 kb on - strand at 1135.566 kb on - strand at 1135.847 kb on + strand, within Dsui_1096 at 1135.883 kb on + strand, within Dsui_1096 at 1135.914 kb on + strand, within Dsui_1096 at 1135.932 kb on - strand, within Dsui_1096 at 1135.999 kb on - strand, within Dsui_1096 at 1136.010 kb on - strand, within Dsui_1096 at 1136.020 kb on - strand, within Dsui_1096 at 1136.056 kb on - strand, within Dsui_1096 at 1136.143 kb on - strand, within Dsui_1096 at 1136.162 kb on + strand, within Dsui_1096 at 1136.228 kb on + strand, within Dsui_1096 at 1136.535 kb on + strand, within Dsui_1096 at 1136.591 kb on + strand, within Dsui_1096 at 1136.591 kb on + strand, within Dsui_1096 at 1136.599 kb on - strand, within Dsui_1096 at 1136.599 kb on - strand, within Dsui_1096 at 1136.746 kb on - strand, within Dsui_1096 at 1136.789 kb on + strand, within Dsui_1096 at 1136.896 kb on + strand, within Dsui_1096 at 1136.933 kb on - strand at 1137.065 kb on + strand, within Dsui_1096 at 1137.193 kb on + strand, within Dsui_1096 at 1137.214 kb on + strand, within Dsui_1096 at 1137.245 kb on - strand at 1137.440 kb on - strand at 1137.443 kb on + strand, within Dsui_1096 at 1137.598 kb on - strand, within Dsui_1096 at 1137.641 kb on - strand, within Dsui_1096 at 1137.763 kb on + strand, within Dsui_1096 at 1137.769 kb on - strand, within Dsui_1096 at 1137.770 kb on - strand, within Dsui_1096 at 1137.814 kb on + strand, within Dsui_1096 at 1138.021 kb on - strand, within Dsui_1096 at 1138.114 kb on + strand, within Dsui_1096 at 1138.211 kb on + strand, within Dsui_1096 at 1138.441 kb on + strand, within Dsui_1096 at 1138.546 kb on - strand, within Dsui_1096 at 1138.602 kb on + strand, within Dsui_1096 at 1138.649 kb on + strand, within Dsui_1096 at 1138.649 kb on + strand, within Dsui_1096 at 1138.916 kb on + strand, within Dsui_1096 at 1138.948 kb on + strand, within Dsui_1096 at 1138.975 kb on + strand, within Dsui_1096 at 1139.036 kb on - strand, within Dsui_1096 at 1139.093 kb on + strand, within Dsui_1096 at 1139.101 kb on - strand at 1139.279 kb on + strand, within Dsui_1096 at 1139.426 kb on - strand, within Dsui_1096 at 1139.431 kb on - strand, within Dsui_1096 at 1139.439 kb on + strand, within Dsui_1096 at 1139.445 kb on - strand, within Dsui_1096 at 1139.488 kb on + strand, within Dsui_1096 at 1139.488 kb on + strand, within Dsui_1096 at 1139.515 kb on - strand at 1139.679 kb on - strand at 1139.745 kb on - strand at 1139.786 kb on + strand at 1139.786 kb on + strand at 1139.792 kb on - strand at 1139.794 kb on - strand at 1139.798 kb on + strand at 1139.832 kb on - strand at 1139.949 kb on - strand at 1140.018 kb on + strand at 1140.029 kb on + strand at 1140.323 kb on + strand, within Dsui_1097 at 1140.370 kb on - strand at 1140.377 kb on + strand, within Dsui_1097 at 1140.539 kb on + strand, within Dsui_1097 at 1140.656 kb on + strand, within Dsui_1097 at 1140.829 kb on - strand, within Dsui_1097 at 1140.934 kb on - strand, within Dsui_1097
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,135,017 + -0.5 1,135,038 - -1.4 1,135,038 - -1.7 1,135,088 - +0.6 1,135,112 - -1.4 1,135,148 + -0.1 1,135,181 - -1.0 1,135,265 + +1.5 1,135,265 + +1.3 1,135,265 + +0.7 1,135,270 + +1.3 1,135,273 - -2.0 1,135,273 - -1.4 1,135,449 - -1.0 1,135,566 - -1.0 1,135,847 + Dsui_1096 0.12 +1.0 1,135,883 + Dsui_1096 0.13 +1.7 1,135,914 + Dsui_1096 0.14 +1.7 1,135,932 - Dsui_1096 0.14 -1.4 1,135,999 - Dsui_1096 0.16 -1.0 1,136,010 - Dsui_1096 0.16 +0.6 1,136,020 - Dsui_1096 0.16 +0.6 1,136,056 - Dsui_1096 0.17 -1.7 1,136,143 - Dsui_1096 0.19 -0.4 1,136,162 + Dsui_1096 0.19 +0.3 1,136,228 + Dsui_1096 0.21 -0.1 1,136,535 + Dsui_1096 0.27 +1.0 1,136,591 + Dsui_1096 0.28 -0.9 1,136,591 + Dsui_1096 0.28 +1.5 1,136,599 - Dsui_1096 0.28 +0.6 1,136,599 - Dsui_1096 0.28 -1.0 1,136,746 - Dsui_1096 0.32 +0.6 1,136,789 + Dsui_1096 0.32 +1.1 1,136,896 + Dsui_1096 0.35 +1.5 1,136,933 - -1.4 1,137,065 + Dsui_1096 0.38 +0.8 1,137,193 + Dsui_1096 0.41 +0.9 1,137,214 + Dsui_1096 0.42 +0.8 1,137,245 - -0.4 1,137,440 - +0.6 1,137,443 + Dsui_1096 0.46 +1.4 1,137,598 - Dsui_1096 0.50 +0.6 1,137,641 - Dsui_1096 0.51 -1.7 1,137,763 + Dsui_1096 0.53 +1.2 1,137,769 - Dsui_1096 0.53 -0.4 1,137,770 - Dsui_1096 0.53 -0.4 1,137,814 + Dsui_1096 0.54 +0.5 1,138,021 - Dsui_1096 0.59 -1.7 1,138,114 + Dsui_1096 0.61 +0.9 1,138,211 + Dsui_1096 0.63 +1.0 1,138,441 + Dsui_1096 0.68 +1.3 1,138,546 - Dsui_1096 0.70 +0.6 1,138,602 + Dsui_1096 0.71 +1.0 1,138,649 + Dsui_1096 0.72 +1.1 1,138,649 + Dsui_1096 0.72 +0.5 1,138,916 + Dsui_1096 0.78 +1.0 1,138,948 + Dsui_1096 0.78 +1.9 1,138,975 + Dsui_1096 0.79 +0.9 1,139,036 - Dsui_1096 0.80 -0.1 1,139,093 + Dsui_1096 0.82 +1.6 1,139,101 - -0.4 1,139,279 + Dsui_1096 0.85 +1.0 1,139,426 - Dsui_1096 0.89 +0.6 1,139,431 - Dsui_1096 0.89 -2.2 1,139,439 + Dsui_1096 0.89 +1.3 1,139,445 - Dsui_1096 0.89 +0.6 1,139,488 + Dsui_1096 0.90 +1.0 1,139,488 + Dsui_1096 0.90 +1.3 1,139,515 - -0.4 1,139,679 - -1.4 1,139,745 - -1.0 1,139,786 + +1.6 1,139,786 + +1.0 1,139,792 - -1.0 1,139,794 - -1.0 1,139,798 + +0.4 1,139,832 - -1.4 1,139,949 - +0.6 1,140,018 + +1.6 1,140,029 + +1.4 1,140,323 + Dsui_1097 0.25 +1.0 1,140,370 - -0.4 1,140,377 + Dsui_1097 0.28 +1.1 1,140,539 + Dsui_1097 0.39 +1.3 1,140,656 + Dsui_1097 0.47 +1.1 1,140,829 - Dsui_1097 0.59 +0.6 1,140,934 - Dsui_1097 0.66 +0.6
Or see this region's nucleotide sequence