Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31590

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
2,967,704	+		PFLU_RS13130	0.52	-0.9
2,967,705	-		PFLU_RS13130	0.52	-0.4
2,967,705	-		PFLU_RS13130	0.52	-1.7
2,967,705	-		PFLU_RS13130	0.52	-0.2
2,967,769	+		PFLU_RS13130	0.56	-3.2
2,967,769	+		PFLU_RS13130	0.56	-0.6
2,967,769	+		PFLU_RS13130	0.56	-1.1
2,967,769	+		PFLU_RS13130	0.56	+0.5
2,967,769	+		PFLU_RS13130	0.56	-1.0
2,967,770	-		PFLU_RS13130	0.56	-1.7
2,967,770	-		PFLU_RS13130	0.56	-1.7
2,967,770	-		PFLU_RS13130	0.56	-1.0
2,967,770	-		PFLU_RS13130	0.56	+1.7
2,967,779	+		PFLU_RS13130	0.57	+0.4
2,967,779	+		PFLU_RS13130	0.57	+1.9
2,967,779	+		PFLU_RS13130	0.57	-2.5
2,967,779	+		PFLU_RS13130	0.57	+0.7
2,967,779	+		PFLU_RS13130	0.57	-0.3
2,967,779	+		PFLU_RS13130	0.57	+1.8
2,967,779	+		PFLU_RS13130	0.57	+1.8
2,967,779	+		PFLU_RS13130	0.57	-2.7
2,967,780	-		PFLU_RS13130	0.57	-0.9
2,967,780	-		PFLU_RS13130	0.57	-0.4
2,967,780	-		PFLU_RS13130	0.57	-2.5
2,967,780	-		PFLU_RS13130	0.57	-0.7
2,967,919	+		PFLU_RS13130	0.65	+1.9
2,967,919	+		PFLU_RS13130	0.65	-3.3
2,967,920	-		PFLU_RS13130	0.65	+0.6
2,968,014	+		PFLU_RS13130	0.70	+1.7
2,968,014	+		PFLU_RS13130	0.70	+0.7
2,968,015	-		PFLU_RS13130	0.70	+0.3
2,968,015	-		PFLU_RS13130	0.70	-0.7
2,968,015	-		PFLU_RS13130	0.70	-2.5
2,968,093	+		PFLU_RS13130	0.75	+1.4
2,968,093	+		PFLU_RS13130	0.75	+0.1
2,968,094	-		PFLU_RS13130	0.75	+4.5
2,968,175	-		PFLU_RS13130	0.79	+0.8
2,968,175	-		PFLU_RS13130	0.79	+0.1
2,968,186	+		PFLU_RS13130	0.80	+0.7
2,968,186	+		PFLU_RS13130	0.80	-0.4
2,968,186	+		PFLU_RS13130	0.80	+0.8
2,968,187	-		PFLU_RS13130	0.80	+2.2
2,968,187	-		PFLU_RS13130	0.80	-0.3
2,968,255	+		PFLU_RS13130	0.84	-2.3
2,968,255	+		PFLU_RS13130	0.84	-2.5
2,968,255	+		PFLU_RS13130	0.84	-0.5
2,968,255	+		PFLU_RS13130	0.84	-1.3
2,968,255	+		PFLU_RS13130	0.84	-0.7
2,968,256	-		PFLU_RS13130	0.84	+0.7
2,968,256	-		PFLU_RS13130	0.84	+0.0
2,968,256	-		PFLU_RS13130	0.84	+1.3
2,968,256	-		PFLU_RS13130	0.84	+1.5
2,968,267	+		PFLU_RS13130	0.85	+2.5
2,968,268	-		PFLU_RS13130	0.85	-2.1
2,968,268	-		PFLU_RS13130	0.85	-1.5
2,968,296	+		PFLU_RS13130	0.86	+0.7
2,968,297	-		PFLU_RS13130	0.86	-0.7
2,968,297	-		PFLU_RS13130	0.86	-2.2
2,968,440	-				-1.8
2,968,453	+				-0.9
2,968,454	-				+0.5
2,968,454	-				-1.5
2,968,553	+				+1.6
2,968,628	-				+0.5
2,968,661	+				-1.2
2,968,661	+				+0.0
2,968,661	+				-2.5
2,968,662	-				-1.2
2,968,662	-				-2.2
2,968,662	-				-1.4
2,968,662	-				+0.2
2,968,662	-				+3.7
2,968,665	+				-0.4
2,968,665	+				-2.6
2,968,665	+				-1.1
2,968,666	-				-2.1
2,968,666	-				-1.0
2,968,666	-				-1.1
2,968,673	-				-0.4
2,968,673	-				+3.1
2,968,677	+				+0.3
2,968,677	+				+0.3
2,968,677	+				-1.0
2,968,677	+				+1.5
2,968,677	+				+2.9
2,968,677	+				-2.0
2,968,677	+				-1.2
2,968,677	+				-0.5
2,968,678	-				-2.1
2,968,678	-				-3.3
2,968,678	-				-1.0
2,968,697	+				+0.9
2,968,835	+		PFLU_RS31590	0.77	-1.1
2,968,835	+		PFLU_RS31590	0.77	-1.4
2,968,835	+		PFLU_RS31590	0.77	-0.1
2,968,836	-		PFLU_RS31590	0.78	-1.8
2,968,880	+				+0.3
2,968,880	+				+0.8
2,968,880	+				-1.2
2,968,880	+				-2.3
2,968,880	+				+1.1
2,968,880	+				+0.7
2,968,881	-				+1.1
2,968,881	-				+0.3
2,968,881	-				+1.1
2,968,881	-				+0.2
2,968,881	-				+0.8
2,968,881	-				+1.2
2,968,881	-				-2.6
2,968,881	-				-0.6
2,968,891	+				+0.0
2,968,892	-				-1.3
2,968,892	-				-1.1
2,968,892	-				-1.3
2,968,898	+				-1.1
2,968,898	+				-0.6
2,969,011	+				+1.2
2,969,056	+				+1.1
2,969,057	-				-0.3
2,969,057	-				-1.9
2,969,076	+				-2.3
2,969,077	-				+2.5
2,969,101	-				+1.9
2,969,102	+				-1.5
2,969,102	+				-3.1
2,969,102	+				+1.5
2,969,103	-				-1.4
2,969,103	-				-1.1
2,969,107	+				+0.4
2,969,107	+				+1.7
2,969,107	+				+0.9
2,969,107	+				+0.6
2,969,107	+				-1.8
2,969,107	+				+0.3
2,969,107	+				-0.9
2,969,107	+				+1.8
2,969,107	+				-3.7
2,969,107	+				+1.1
2,969,107	+				-1.4
2,969,107	+				-3.0
2,969,107	+				+2.2
2,969,108	-				+0.6
2,969,108	-				-0.6
2,969,108	-				+1.2
2,969,108	-				-0.1
2,969,108	-				+1.7
2,969,108	-				+1.5
2,969,108	-				+2.1
2,969,108	-				+0.0
2,969,108	-				+0.9
2,969,108	-				-0.7
2,969,108	-				-2.4
2,969,126	+				+1.9
2,969,126	+				-2.6
2,969,126	+				-3.3
2,969,126	+				+0.7
2,969,126	+				+2.4
2,969,127	-				-2.4
2,969,130	+				-1.5
2,969,130	+				+0.2
2,969,131	-				-1.3
2,969,131	-				+1.7
2,969,131	-				+0.5
2,969,167	+				-0.1
2,969,167	+				+0.0
2,969,167	+				+2.4
2,969,186	+				+1.6
2,969,186	+				+0.5
2,969,187	-				+2.2
2,969,216	+				+0.5
2,969,216	+				-2.9
2,969,216	+				+1.6
2,969,216	+				-0.2
2,969,216	+				-0.5
2,969,216	+				+1.4
2,969,216	+				+0.3
2,969,216	+				-1.2
2,969,217	-				-0.2
2,969,217	-				+1.4
2,969,217	-				-0.5
2,969,251	+		PFLU_RS13135	0.11	-2.3
2,969,251	+		PFLU_RS13135	0.11	+0.5
2,969,252	-		PFLU_RS13135	0.11	-1.5
2,969,252	-		PFLU_RS13135	0.11	-1.7
2,969,388	-		PFLU_RS13135	0.25	-2.4
2,969,388	-		PFLU_RS13135	0.25	-0.0
2,969,388	-		PFLU_RS13135	0.25	-2.3
2,969,436	+		PFLU_RS13135	0.30	-0.1
2,969,436	+		PFLU_RS13135	0.30	-0.6
2,969,436	+		PFLU_RS13135	0.30	+2.6
2,969,436	+		PFLU_RS13135	0.30	-1.8
2,969,436	+		PFLU_RS13135	0.30	+0.4
2,969,436	+		PFLU_RS13135	0.30	-2.2
2,969,436	+		PFLU_RS13135	0.30	-1.5
2,969,436	+		PFLU_RS13135	0.30	+0.6
2,969,436	+		PFLU_RS13135	0.30	-2.4
2,969,436	+		PFLU_RS13135	0.30	-1.9
2,969,436	+		PFLU_RS13135	0.30	-0.5
2,969,436	+		PFLU_RS13135	0.30	-0.0
2,969,436	+		PFLU_RS13135	0.30	+0.1
2,969,437	-		PFLU_RS13135	0.30	-1.1
2,969,437	-		PFLU_RS13135	0.30	-0.5
2,969,437	-		PFLU_RS13135	0.30	+0.1
2,969,437	-		PFLU_RS13135	0.30	-1.2
2,969,437	-		PFLU_RS13135	0.30	+1.3
2,969,437	-		PFLU_RS13135	0.30	+1.0
2,969,437	-		PFLU_RS13135	0.30	-1.3
2,969,437	-		PFLU_RS13135	0.30	+2.2
2,969,437	-		PFLU_RS13135	0.30	+0.6
2,969,437	-		PFLU_RS13135	0.30	+1.0
2,969,437	-		PFLU_RS13135	0.30	+0.4
2,969,437	-		PFLU_RS13135	0.30	+0.9
2,969,437	-		PFLU_RS13135	0.30	+0.1
2,969,437	-		PFLU_RS13135	0.30	-3.2
2,969,437	-		PFLU_RS13135	0.30	+0.1
2,969,437	-		PFLU_RS13135	0.30	-0.3
2,969,437	-		PFLU_RS13135	0.30	-2.3
2,969,437	-		PFLU_RS13135	0.30	+1.4
2,969,437	-		PFLU_RS13135	0.30	+0.1
2,969,438	+		PFLU_RS13135	0.30	-1.9
2,969,438	+		PFLU_RS13135	0.30	+0.2
2,969,438	+		PFLU_RS13135	0.30	+0.4
2,969,438	+		PFLU_RS13135	0.30	-2.0
2,969,438	+		PFLU_RS13135	0.30	+0.5
2,969,438	+		PFLU_RS13135	0.30	+1.6
2,969,438	+		PFLU_RS13135	0.30	+1.6
2,969,438	+		PFLU_RS13135	0.30	-0.9
2,969,439	-		PFLU_RS13135	0.30	+1.7
2,969,439	-		PFLU_RS13135	0.30	-1.8
2,969,439	-		PFLU_RS13135	0.30	+2.3
2,969,439	-		PFLU_RS13135	0.30	+2.2
2,969,439	-		PFLU_RS13135	0.30	+0.7
2,969,439	-		PFLU_RS13135	0.30	+0.6
2,969,439	-		PFLU_RS13135	0.30	-1.4
2,969,439	-		PFLU_RS13135	0.30	+1.4
2,969,439	-		PFLU_RS13135	0.30	+1.7
2,969,487	+		PFLU_RS13135	0.35	-0.7
2,969,487	+		PFLU_RS13135	0.35	-2.4
2,969,487	+		PFLU_RS13135	0.35	+0.8
2,969,487	+		PFLU_RS13135	0.35	-1.3
2,969,487	+		PFLU_RS13135	0.35	-1.8
2,969,488	-		PFLU_RS13135	0.35	+2.7
2,969,488	-		PFLU_RS13135	0.35	-1.1
2,969,488	-		PFLU_RS13135	0.35	+2.3
2,969,535	+		PFLU_RS13135	0.40	+1.3
2,969,536	-		PFLU_RS13135	0.40	+0.5
2,969,585	+		PFLU_RS13135	0.45	-0.9
2,969,585	+		PFLU_RS13135	0.45	+0.4
2,969,586	-		PFLU_RS13135	0.45	+0.6
2,969,586	-		PFLU_RS13135	0.45	+0.3
2,969,586	-		PFLU_RS13135	0.45	-2.7
2,969,586	-		PFLU_RS13135	0.45	-1.4
2,969,586	-		PFLU_RS13135	0.45	-2.0
2,969,586	-		PFLU_RS13135	0.45	-0.4
2,969,586	-		PFLU_RS13135	0.45	+1.0
2,969,673	+		PFLU_RS13135	0.54	-1.0
2,969,673	+		PFLU_RS13135	0.54	+2.1
2,969,673	+		PFLU_RS13135	0.54	-2.6
2,969,673	+		PFLU_RS13135	0.54	-2.3
2,969,673	+		PFLU_RS13135	0.54	+0.1
2,969,673	+		PFLU_RS13135	0.54	-1.0
2,969,673	+		PFLU_RS13135	0.54	+2.1
2,969,673	+		PFLU_RS13135	0.54	-0.2
2,969,673	+		PFLU_RS13135	0.54	+0.3
2,969,673	+		PFLU_RS13135	0.54	-1.5
2,969,673	+		PFLU_RS13135	0.54	-2.5
2,969,673	+		PFLU_RS13135	0.54	-1.0
2,969,674	-		PFLU_RS13135	0.54	-0.6
2,969,674	-		PFLU_RS13135	0.54	-0.2
2,969,674	-		PFLU_RS13135	0.54	-2.5
2,969,674	-		PFLU_RS13135	0.54	+1.3
2,969,674	-		PFLU_RS13135	0.54	-1.4
2,969,674	-		PFLU_RS13135	0.54	+1.4
2,969,674	-		PFLU_RS13135	0.54	-1.3
2,969,674	-		PFLU_RS13135	0.54	-2.6
2,969,674	-		PFLU_RS13135	0.54	+1.2
2,969,674	-		PFLU_RS13135	0.54	+0.4
2,969,674	-		PFLU_RS13135	0.54	+0.8
2,969,674	-		PFLU_RS13135	0.54	+0.6
2,969,674	-		PFLU_RS13135	0.54	-0.3
2,969,675	+		PFLU_RS13135	0.54	-0.6
2,969,675	+		PFLU_RS13135	0.54	+1.5
2,969,675	+		PFLU_RS13135	0.54	+0.8
2,969,675	+		PFLU_RS13135	0.54	-0.2
2,969,675	+		PFLU_RS13135	0.54	-0.6
2,969,675	+		PFLU_RS13135	0.54	-2.1
2,969,676	-		PFLU_RS13135	0.54	+1.1
2,969,676	-		PFLU_RS13135	0.54	-1.1
2,969,676	-		PFLU_RS13135	0.54	-1.1
2,969,676	-		PFLU_RS13135	0.54	-0.9
2,969,676	-		PFLU_RS13135	0.54	+1.0
2,969,676	-		PFLU_RS13135	0.54	-0.2
2,969,676	-		PFLU_RS13135	0.54	+1.2