Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27770

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
6,180,590	-		PFLU_RS27765	0.41	+2.3
6,180,662	+		PFLU_RS27765	0.46	-1.4
6,180,662	+		PFLU_RS27765	0.46	-2.2
6,180,662	+		PFLU_RS27765	0.46	-3.3
6,180,662	+		PFLU_RS27765	0.46	+0.3
6,180,662	+		PFLU_RS27765	0.46	-2.2
6,180,662	+		PFLU_RS27765	0.46	-2.4
6,180,662	+		PFLU_RS27765	0.46	-1.1
6,180,662	+		PFLU_RS27765	0.46	+1.4
6,180,662	+		PFLU_RS27765	0.46	+2.8
6,180,662	+		PFLU_RS27765	0.46	+1.9
6,180,663	-		PFLU_RS27765	0.46	-0.3
6,180,663	-		PFLU_RS27765	0.46	-2.4
6,180,663	-		PFLU_RS27765	0.46	-2.5
6,180,663	-		PFLU_RS27765	0.46	-2.7
6,180,663	-		PFLU_RS27765	0.46	+0.3
6,180,663	-		PFLU_RS27765	0.46	+3.0
6,180,663	-		PFLU_RS27765	0.46	-0.4
6,180,663	-		PFLU_RS27765	0.46	+0.1
6,180,663	-		PFLU_RS27765	0.46	-0.8
6,180,663	-		PFLU_RS27765	0.46	+0.0
6,180,663	-		PFLU_RS27765	0.46	+1.5
6,180,663	-		PFLU_RS27765	0.46	+1.2
6,180,663	-		PFLU_RS27765	0.46	-1.6
6,180,663	-		PFLU_RS27765	0.46	+0.8
6,180,663	-		PFLU_RS27765	0.46	+0.4
6,180,663	-		PFLU_RS27765	0.46	-0.6
6,180,663	-		PFLU_RS27765	0.46	-2.7
6,180,663	-		PFLU_RS27765	0.46	+1.3
6,180,663	-		PFLU_RS27765	0.46	+0.5
6,180,663	-		PFLU_RS27765	0.46	-0.3
6,180,663	-		PFLU_RS27765	0.46	+0.4
6,180,663	-		PFLU_RS27765	0.46	-1.9
6,180,663	-		PFLU_RS27765	0.46	+0.6
6,180,666	+		PFLU_RS27765	0.46	+1.4
6,180,666	+		PFLU_RS27765	0.46	+0.8
6,180,666	+		PFLU_RS27765	0.46	-2.3
6,180,666	+		PFLU_RS27765	0.46	+1.2
6,180,666	+		PFLU_RS27765	0.46	-0.8
6,180,666	+		PFLU_RS27765	0.46	-3.1
6,180,666	+		PFLU_RS27765	0.46	+0.7
6,180,666	+		PFLU_RS27765	0.46	-1.7
6,180,666	+		PFLU_RS27765	0.46	+0.4
6,180,666	+		PFLU_RS27765	0.46	+0.7
6,180,666	+		PFLU_RS27765	0.46	+1.3
6,180,666	+		PFLU_RS27765	0.46	-3.4
6,180,666	+		PFLU_RS27765	0.46	+1.4
6,180,666	+		PFLU_RS27765	0.46	-0.9
6,180,666	+		PFLU_RS27765	0.46	-0.9
6,180,666	+		PFLU_RS27765	0.46	-0.7
6,180,666	+		PFLU_RS27765	0.46	+0.7
6,180,666	+		PFLU_RS27765	0.46	+2.1
6,180,666	+		PFLU_RS27765	0.46	+0.9
6,180,667	-		PFLU_RS27765	0.46	+0.8
6,180,667	-		PFLU_RS27765	0.46	+0.4
6,180,667	-		PFLU_RS27765	0.46	+0.0
6,180,667	-		PFLU_RS27765	0.46	+1.7
6,180,667	-		PFLU_RS27765	0.46	+2.8
6,180,667	-		PFLU_RS27765	0.46	-2.8
6,180,667	-		PFLU_RS27765	0.46	-1.6
6,180,667	-		PFLU_RS27765	0.46	-0.9
6,180,667	-		PFLU_RS27765	0.46	+2.7
6,180,667	-		PFLU_RS27765	0.46	-1.2
6,180,667	-		PFLU_RS27765	0.46	-0.0
6,180,667	-		PFLU_RS27765	0.46	-2.8
6,180,667	-		PFLU_RS27765	0.46	-3.6
6,180,678	+		PFLU_RS27765	0.47	-0.8
6,180,678	+		PFLU_RS27765	0.47	+1.1
6,180,678	+		PFLU_RS27765	0.47	-2.5
6,180,679	-		PFLU_RS27765	0.47	-3.8
6,180,679	-		PFLU_RS27765	0.47	+1.5
6,180,751	-		PFLU_RS27765	0.52	+3.1
6,180,751	-		PFLU_RS27765	0.52	-2.2
6,180,795	+		PFLU_RS27765	0.55	-3.3
6,180,795	+		PFLU_RS27765	0.55	+0.9
6,180,795	+		PFLU_RS27765	0.55	-1.7
6,180,882	+		PFLU_RS27765	0.61	+1.1
6,180,883	-		PFLU_RS27765	0.61	+1.3
6,180,915	+		PFLU_RS27765	0.63	-1.8
6,180,915	+		PFLU_RS27765	0.63	-0.4
6,180,915	+		PFLU_RS27765	0.63	+0.6
6,180,916	-		PFLU_RS27765	0.63	+2.2
6,180,916	-		PFLU_RS27765	0.63	+0.4
6,180,916	-		PFLU_RS27765	0.63	-1.0
6,180,916	-		PFLU_RS27765	0.63	+0.1
6,180,931	+		PFLU_RS27765	0.65	+0.7
6,180,931	+		PFLU_RS27765	0.65	-1.6
6,180,931	+		PFLU_RS27765	0.65	+0.2
6,180,931	+		PFLU_RS27765	0.65	-0.7
6,180,932	-		PFLU_RS27765	0.65	-0.1
6,180,932	-		PFLU_RS27765	0.65	+2.1
6,180,932	-		PFLU_RS27765	0.65	+0.1
6,181,012	+		PFLU_RS27765	0.70	+0.9
6,181,012	+		PFLU_RS27765	0.70	+0.1
6,181,012	+		PFLU_RS27765	0.70	+0.4
6,181,012	+		PFLU_RS27765	0.70	-1.9
6,181,013	-		PFLU_RS27765	0.70	-2.2
6,181,013	-		PFLU_RS27765	0.70	+1.1
6,181,013	-		PFLU_RS27765	0.70	-2.7
6,181,013	-		PFLU_RS27765	0.70	+0.1
6,181,071	+		PFLU_RS27765	0.74	-0.3
6,181,071	+		PFLU_RS27765	0.74	+2.0
6,181,071	+		PFLU_RS27765	0.74	+0.8
6,181,072	-		PFLU_RS27765	0.74	+1.2
6,181,072	-		PFLU_RS27765	0.74	+0.1
6,181,072	-		PFLU_RS27765	0.74	-0.0
6,181,072	-		PFLU_RS27765	0.74	-1.6
6,181,072	-		PFLU_RS27765	0.74	-3.9
6,181,072	-		PFLU_RS27765	0.74	+0.2
6,181,092	+		PFLU_RS27765	0.76	+0.2
6,181,092	+		PFLU_RS27765	0.76	-2.9
6,181,092	+		PFLU_RS27765	0.76	+2.0
6,181,093	-		PFLU_RS27765	0.76	+2.7
6,181,093	-		PFLU_RS27765	0.76	+0.3
6,181,093	-		PFLU_RS27765	0.76	+2.2
6,181,155	+		PFLU_RS27765	0.80	+0.7
6,181,155	+		PFLU_RS27765	0.80	+1.9
6,181,155	+		PFLU_RS27765	0.80	+0.9
6,181,155	+		PFLU_RS27765	0.80	-2.4
6,181,155	+		PFLU_RS27765	0.80	+0.1
6,181,155	+		PFLU_RS27765	0.80	+2.6
6,181,155	+		PFLU_RS27765	0.80	-1.9
6,181,155	+		PFLU_RS27765	0.80	-0.1
6,181,155	+		PFLU_RS27765	0.80	-2.4
6,181,155	+		PFLU_RS27765	0.80	+0.5
6,181,155	+		PFLU_RS27765	0.80	-3.5
6,181,155	+		PFLU_RS27765	0.80	+1.7
6,181,156	-		PFLU_RS27765	0.80	-1.6
6,181,156	-		PFLU_RS27765	0.80	+2.5
6,181,156	-		PFLU_RS27765	0.80	-3.6
6,181,156	-		PFLU_RS27765	0.80	+1.5
6,181,156	-		PFLU_RS27765	0.80	-0.2
6,181,156	-		PFLU_RS27765	0.80	-3.1
6,181,156	-		PFLU_RS27765	0.80	+1.0
6,181,156	-		PFLU_RS27765	0.80	+0.7
6,181,156	-		PFLU_RS27765	0.80	-3.7
6,181,159	+		PFLU_RS27765	0.80	-0.6
6,181,159	+		PFLU_RS27765	0.80	-0.6
6,181,160	-		PFLU_RS27765	0.80	-2.2
6,181,160	-		PFLU_RS27765	0.80	+0.2
6,181,160	-		PFLU_RS27765	0.80	-3.8
6,181,160	-		PFLU_RS27765	0.80	+0.8
6,181,221	+		PFLU_RS27765	0.85	-3.4
6,181,222	-		PFLU_RS27765	0.85	+1.1
6,181,222	-		PFLU_RS27765	0.85	-2.8
6,181,399	+				-1.6
6,181,400	-				-2.9
6,181,410	+				-2.3
6,181,410	+				+3.2
6,181,410	+				+0.6
6,181,410	+				-0.2
6,181,410	+				-3.4
6,181,410	+				-0.7
6,181,410	+				-0.7
6,181,410	+				-1.3
6,181,410	+				-3.1
6,181,410	+				+1.6
6,181,410	+				-1.8
6,181,410	+				-1.0
6,181,411	-				+2.5
6,181,411	-				+2.0
6,181,411	-				-0.3
6,181,411	-				-1.6
6,181,411	-				-1.6
6,181,411	-				-2.7
6,181,411	-				-0.4
6,181,411	-				+0.3
6,181,411	-				-0.1
6,181,411	-				+1.1
6,181,411	-				-1.8
6,181,460	+				-3.4
6,181,460	+				+1.5
6,181,460	+				-0.1
6,181,460	+				+0.7
6,181,460	+				-1.3
6,181,461	-				+0.4
6,181,461	-				-1.8
6,181,461	-				+0.9
6,181,466	+				+0.4
6,181,762	-		PFLU_RS27770	0.48	+0.6
6,181,817	+		PFLU_RS27770	0.56	-0.3
6,181,817	+		PFLU_RS27770	0.56	-2.6
6,181,817	+		PFLU_RS27770	0.56	-4.2
6,181,817	+		PFLU_RS27770	0.56	-2.3
6,181,817	+		PFLU_RS27770	0.56	-1.8
6,181,817	+		PFLU_RS27770	0.56	-1.2
6,181,818	-		PFLU_RS27770	0.56	-2.0
6,181,818	-		PFLU_RS27770	0.56	-0.8
6,181,818	-		PFLU_RS27770	0.56	-0.0
6,181,818	-		PFLU_RS27770	0.56	-1.3
6,181,818	-		PFLU_RS27770	0.56	-0.1
6,181,818	-		PFLU_RS27770	0.56	-0.7
6,181,818	-		PFLU_RS27770	0.56	-3.1
6,181,818	-		PFLU_RS27770	0.56	-2.0
6,181,818	-		PFLU_RS27770	0.56	-0.3
6,181,818	-		PFLU_RS27770	0.56	-0.2
6,182,057	-				-0.9
6,182,144	+				-0.2
6,182,144	+				-1.8
6,182,144	+				-2.7
6,182,145	-				+0.8
6,182,161	+				-0.3
6,182,210	+		PFLU_RS27775	0.18	+2.7
6,182,211	-		PFLU_RS27775	0.18	+0.4
6,182,378	+		PFLU_RS27775	0.52	+0.3
6,182,379	-		PFLU_RS27775	0.52	-0.2
6,182,379	-		PFLU_RS27775	0.52	+0.8
6,182,385	+		PFLU_RS27775	0.53	+1.2
6,182,385	+		PFLU_RS27775	0.53	-1.1
6,182,386	-		PFLU_RS27775	0.53	-3.0
6,182,386	-		PFLU_RS27775	0.53	+1.1
6,182,537	+		PFLU_RS27775	0.83	+0.5
6,182,537	+		PFLU_RS27775	0.83	-2.5
6,182,537	+		PFLU_RS27775	0.83	+0.4
6,182,537	+		PFLU_RS27775	0.83	+0.5
6,182,537	+		PFLU_RS27775	0.83	+0.5
6,182,537	+		PFLU_RS27775	0.83	-0.3
6,182,538	-		PFLU_RS27775	0.84	+0.7
6,182,538	-		PFLU_RS27775	0.84	-0.5
6,182,538	-		PFLU_RS27775	0.84	-1.1
6,182,538	-		PFLU_RS27775	0.84	-1.4
6,182,538	-		PFLU_RS27775	0.84	-0.8
6,182,538	-		PFLU_RS27775	0.84	-0.2
6,182,538	-		PFLU_RS27775	0.84	+0.6
6,182,538	-		PFLU_RS27775	0.84	+0.9
6,182,538	-		PFLU_RS27775	0.84	-0.1
6,182,538	-		PFLU_RS27775	0.84	-1.5
6,182,538	-		PFLU_RS27775	0.84	-1.8
6,182,538	-		PFLU_RS27775	0.84	-2.3
6,182,538	-		PFLU_RS27775	0.84	-1.7
6,182,538	-		PFLU_RS27775	0.84	+0.5
6,182,538	-		PFLU_RS27775	0.84	+0.4
6,182,553	-		PFLU_RS27775	0.87	+0.7
6,182,553	-		PFLU_RS27775	0.87	-1.6
6,182,553	-		PFLU_RS27775	0.87	-1.6
6,182,643	+				+1.2
6,182,643	+				+1.7
6,182,644	-				-1.6
6,182,644	-				+0.6
6,182,654	+				-1.2
6,182,674	+				-1.9
6,182,674	+				-1.7
6,182,674	+				+1.1
6,182,674	+				+1.8
6,182,674	+				+0.5
6,182,674	+				+0.3
6,182,674	+				+0.7
6,182,674	+				-2.7
6,182,674	+				-1.3
6,182,674	+				-1.3
6,182,674	+				+2.6
6,182,674	+				+1.6
6,182,674	+				+0.0
6,182,674	+				+0.9
6,182,674	+				+0.4
6,182,674	+				+2.7
6,182,674	+				-3.2
6,182,674	+				-2.8
6,182,675	-				+1.0
6,182,675	-				+1.3
6,182,675	-				-1.1
6,182,675	-				-0.4
6,182,675	-				+4.8
6,182,675	-				-3.4
6,182,675	-				-1.5
6,182,675	-				+0.6
6,182,675	-				-0.1
6,182,675	-				+1.5
6,182,675	-				+0.2
6,182,675	-				+0.5
6,182,675	-				+0.5
6,182,675	-				-0.4
6,182,678	+				+1.7
6,182,678	+				+2.1
6,182,678	+				+1.4
6,182,679	-				-2.4
6,182,679	-				-3.1
6,182,679	-				-2.0
6,182,742	+				+1.0
6,182,743	-				-2.8
6,182,743	-				+1.7
6,182,743	-				-2.0
6,182,757	+				-1.4
6,182,758	-				+0.5
6,182,758	-				-1.1
6,182,758	-				+0.9
6,182,788	+				-2.8
6,182,788	+				-1.4
6,182,788	+				+1.6
6,182,788	+				+0.2
6,182,788	+				+0.7
6,182,788	+				-0.6
6,182,788	+				+2.1
6,182,788	+				+1.5
6,182,788	+				-1.8
6,182,788	+				-0.8
6,182,789	-				-0.3
6,182,789	-				-0.7
6,182,789	-				-0.1
6,182,789	-				+0.9
6,182,789	-				+1.1
6,182,789	-				-0.7
6,182,789	-				-0.8
6,182,792	+				+1.6
6,182,792	+				+0.9
6,182,792	+				-0.5
6,182,792	+				-0.1
6,182,792	+				-1.1
6,182,792	+				-0.4
6,182,793	-				-0.8
6,182,793	-				+2.2
6,182,793	-				+0.3
6,182,793	-				-0.3
6,182,793	-				-2.1
6,182,857	+				-0.6
6,182,858	-				+0.1
6,182,890	+		PFLU_RS27780	0.11	-3.9
6,182,890	+		PFLU_RS27780	0.11	+2.0
6,182,891	-		PFLU_RS27780	0.11	-1.3
6,182,891	-		PFLU_RS27780	0.11	-3.4
6,182,916	+		PFLU_RS27780	0.14	-0.2
6,182,916	+		PFLU_RS27780	0.14	+0.3
6,182,916	+		PFLU_RS27780	0.14	+0.6
6,182,916	+		PFLU_RS27780	0.14	-0.2
6,182,916	+		PFLU_RS27780	0.14	+2.5
6,182,916	+		PFLU_RS27780	0.14	-2.4
6,182,916	+		PFLU_RS27780	0.14	-0.4
6,182,916	+		PFLU_RS27780	0.14	+1.7
6,182,916	+		PFLU_RS27780	0.14	+1.3
6,182,916	+		PFLU_RS27780	0.14	+0.7
6,182,916	+		PFLU_RS27780	0.14	-4.0
6,182,916	+		PFLU_RS27780	0.14	-0.6
6,182,916	+		PFLU_RS27780	0.14	+2.3
6,182,916	+		PFLU_RS27780	0.14	-1.4
6,182,916	+		PFLU_RS27780	0.14	+3.3
6,182,917	-		PFLU_RS27780	0.14	+1.1
6,182,917	-		PFLU_RS27780	0.14	-2.1
6,182,917	-		PFLU_RS27780	0.14	-1.4
6,182,917	-		PFLU_RS27780	0.14	-3.9
6,182,917	-		PFLU_RS27780	0.14	+0.2
6,182,917	-		PFLU_RS27780	0.14	-0.6
6,182,917	-		PFLU_RS27780	0.14	-2.4
6,182,917	-		PFLU_RS27780	0.14	-0.2
6,182,917	-		PFLU_RS27780	0.14	-0.5
6,182,917	-		PFLU_RS27780	0.14	+1.5
6,182,917	-		PFLU_RS27780	0.14	+1.1
6,182,917	-		PFLU_RS27780	0.14	+0.4
6,182,917	-		PFLU_RS27780	0.14	-3.2
6,182,917	-		PFLU_RS27780	0.14	+0.5
6,182,917	-		PFLU_RS27780	0.14	+0.7
6,182,917	-		PFLU_RS27780	0.14	-2.6
6,182,917	-		PFLU_RS27780	0.14	-1.6
6,182,917	-		PFLU_RS27780	0.14	+0.4
6,182,917	-		PFLU_RS27780	0.14	-2.6
6,183,042	+		PFLU_RS27780	0.28	-1.6
6,183,042	+		PFLU_RS27780	0.28	+1.9
6,183,042	+		PFLU_RS27780	0.28	+0.0
6,183,043	-		PFLU_RS27780	0.28	+0.8
6,183,043	-		PFLU_RS27780	0.28	+0.3
6,183,043	-		PFLU_RS27780	0.28	-1.1
6,183,043	-		PFLU_RS27780	0.28	-1.7