Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4047 and HP15_4048 are separated by 40 nucleotides HP15_4048 and HP15_4049 are separated by 21 nucleotides
HP15_4047: HP15_4047 - metallo-beta-lactamase family protein, at 4,280,217 to 4,281,599
_4047
HP15_4048: HP15_4048 - extracellular solute-binding protein, family 3, at 4,281,640 to 4,282,404
_4048
HP15_4049: HP15_4049 - HD-GYP domain protein, at 4,282,426 to 4,283,808
_4049
Position (kb)
4281
4282
4283 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4280.654 kb on - strand, within HP15_4047 at 4280.663 kb on + strand, within HP15_4047 at 4280.682 kb on - strand, within HP15_4047 at 4280.689 kb on - strand, within HP15_4047 at 4280.793 kb on - strand, within HP15_4047 at 4280.848 kb on - strand, within HP15_4047 at 4280.904 kb on - strand, within HP15_4047 at 4280.957 kb on + strand, within HP15_4047 at 4280.965 kb on - strand, within HP15_4047 at 4280.965 kb on - strand, within HP15_4047 at 4281.049 kb on + strand, within HP15_4047 at 4281.150 kb on - strand, within HP15_4047 at 4281.162 kb on + strand, within HP15_4047 at 4281.170 kb on - strand, within HP15_4047 at 4281.170 kb on - strand, within HP15_4047 at 4281.170 kb on - strand, within HP15_4047 at 4281.189 kb on - strand, within HP15_4047 at 4281.228 kb on - strand, within HP15_4047 at 4281.237 kb on + strand, within HP15_4047 at 4281.312 kb on - strand, within HP15_4047 at 4281.312 kb on - strand, within HP15_4047 at 4281.393 kb on + strand, within HP15_4047 at 4281.455 kb on + strand, within HP15_4047 at 4281.468 kb on + strand at 4281.476 kb on - strand at 4281.486 kb on - strand at 4281.621 kb on - strand at 4281.677 kb on - strand at 4281.689 kb on + strand at 4281.727 kb on + strand, within HP15_4048 at 4281.732 kb on + strand, within HP15_4048 at 4281.740 kb on - strand, within HP15_4048 at 4282.272 kb on + strand, within HP15_4048 at 4282.272 kb on + strand, within HP15_4048 at 4282.277 kb on + strand, within HP15_4048 at 4282.295 kb on + strand, within HP15_4048 at 4282.381 kb on + strand at 4282.382 kb on - strand at 4282.382 kb on - strand at 4282.382 kb on - strand at 4282.382 kb on - strand at 4282.454 kb on - strand at 4282.564 kb on + strand at 4282.576 kb on + strand, within HP15_4049 at 4282.709 kb on + strand, within HP15_4049 at 4282.712 kb on - strand, within HP15_4049 at 4282.760 kb on + strand, within HP15_4049 at 4282.979 kb on + strand, within HP15_4049 at 4283.006 kb on + strand, within HP15_4049 at 4283.165 kb on + strand, within HP15_4049 at 4283.275 kb on + strand, within HP15_4049 at 4283.283 kb on - strand, within HP15_4049 at 4283.307 kb on - strand, within HP15_4049
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 4,280,654 - HP15_4047 0.32 +0.5 4,280,663 + HP15_4047 0.32 -0.4 4,280,682 - HP15_4047 0.34 +1.1 4,280,689 - HP15_4047 0.34 +0.2 4,280,793 - HP15_4047 0.42 +0.6 4,280,848 - HP15_4047 0.46 -0.6 4,280,904 - HP15_4047 0.50 +1.4 4,280,957 + HP15_4047 0.54 +2.2 4,280,965 - HP15_4047 0.54 -1.9 4,280,965 - HP15_4047 0.54 -0.0 4,281,049 + HP15_4047 0.60 -0.0 4,281,150 - HP15_4047 0.67 -1.1 4,281,162 + HP15_4047 0.68 -0.4 4,281,170 - HP15_4047 0.69 +3.1 4,281,170 - HP15_4047 0.69 +1.8 4,281,170 - HP15_4047 0.69 -0.6 4,281,189 - HP15_4047 0.70 -0.7 4,281,228 - HP15_4047 0.73 -2.4 4,281,237 + HP15_4047 0.74 +0.2 4,281,312 - HP15_4047 0.79 -0.6 4,281,312 - HP15_4047 0.79 -1.8 4,281,393 + HP15_4047 0.85 +0.0 4,281,455 + HP15_4047 0.90 +1.6 4,281,468 + -1.1 4,281,476 - -0.6 4,281,486 - -0.7 4,281,621 - -0.3 4,281,677 - +0.1 4,281,689 + +0.3 4,281,727 + HP15_4048 0.11 +2.5 4,281,732 + HP15_4048 0.12 -0.5 4,281,740 - HP15_4048 0.13 -1.4 4,282,272 + HP15_4048 0.83 -0.3 4,282,272 + HP15_4048 0.83 -0.4 4,282,277 + HP15_4048 0.83 +0.8 4,282,295 + HP15_4048 0.86 -0.3 4,282,381 + +1.2 4,282,382 - +1.7 4,282,382 - +0.1 4,282,382 - -1.3 4,282,382 - +1.5 4,282,454 - +1.2 4,282,564 + +1.5 4,282,576 + HP15_4049 0.11 -0.1 4,282,709 + HP15_4049 0.20 -0.0 4,282,712 - HP15_4049 0.21 -1.2 4,282,760 + HP15_4049 0.24 -0.4 4,282,979 + HP15_4049 0.40 +1.5 4,283,006 + HP15_4049 0.42 +1.2 4,283,165 + HP15_4049 0.53 +1.4 4,283,275 + HP15_4049 0.61 +0.5 4,283,283 - HP15_4049 0.62 -0.6 4,283,307 - HP15_4049 0.64 +0.8
Or see this region's nucleotide sequence