Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2447 and HP15_2448 are separated by 15 nucleotides HP15_2448 and HP15_2449 are separated by 9 nucleotides HP15_2449 and HP15_2450 are separated by 30 nucleotides
HP15_2447: HP15_2447 - magnesium transporter, at 2,583,682 to 2,585,043
_2447
HP15_2448: HP15_2448 - protein belonging to uncharacterized protein family UPF0307, at 2,585,059 to 2,585,586
_2448
HP15_2449: HP15_2449 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 2,585,596 to 2,586,441
_2449
HP15_2450: HP15_2450 - conserved hypothetical protein, at 2,586,472 to 2,590,227
_2450
Position (kb)
2585
2586
2587 Strain fitness (log2 ratio)
-2
-1
0
1 at 2585.157 kb on - strand, within HP15_2448 at 2585.189 kb on - strand, within HP15_2448 at 2585.335 kb on - strand, within HP15_2448 at 2585.549 kb on + strand at 2585.579 kb on - strand at 2585.685 kb on - strand, within HP15_2449 at 2585.690 kb on - strand, within HP15_2449 at 2585.723 kb on - strand, within HP15_2449 at 2585.790 kb on + strand, within HP15_2449 at 2585.880 kb on + strand, within HP15_2449 at 2585.930 kb on - strand, within HP15_2449 at 2586.130 kb on - strand, within HP15_2449 at 2586.141 kb on + strand, within HP15_2449 at 2586.149 kb on - strand, within HP15_2449 at 2586.240 kb on + strand, within HP15_2449 at 2586.631 kb on - strand at 2586.764 kb on - strand at 2586.835 kb on - strand at 2586.872 kb on + strand, within HP15_2450 at 2586.938 kb on + strand, within HP15_2450 at 2586.938 kb on + strand, within HP15_2450 at 2587.035 kb on + strand, within HP15_2450 at 2587.222 kb on - strand, within HP15_2450 at 2587.363 kb on + strand, within HP15_2450
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 2,585,157 - HP15_2448 0.19 -0.8 2,585,189 - HP15_2448 0.25 +0.3 2,585,335 - HP15_2448 0.52 +0.5 2,585,549 + -1.6 2,585,579 - +0.0 2,585,685 - HP15_2449 0.11 -1.7 2,585,690 - HP15_2449 0.11 -1.3 2,585,723 - HP15_2449 0.15 -0.7 2,585,790 + HP15_2449 0.23 -1.6 2,585,880 + HP15_2449 0.34 -1.3 2,585,930 - HP15_2449 0.39 -2.4 2,586,130 - HP15_2449 0.63 -1.7 2,586,141 + HP15_2449 0.64 -2.0 2,586,149 - HP15_2449 0.65 -1.6 2,586,240 + HP15_2449 0.76 -2.0 2,586,631 - -0.8 2,586,764 - +0.7 2,586,835 - -0.4 2,586,872 + HP15_2450 0.11 -0.1 2,586,938 + HP15_2450 0.12 +0.7 2,586,938 + HP15_2450 0.12 +1.4 2,587,035 + HP15_2450 0.15 +0.2 2,587,222 - HP15_2450 0.20 -0.2 2,587,363 + HP15_2450 0.24 -0.1
Or see this region's nucleotide sequence