Strain Fitness in Marinobacter adhaerens HP15 around HP15_2449

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2447 and HP15_2448 are separated by 15 nucleotidesHP15_2448 and HP15_2449 are separated by 9 nucleotidesHP15_2449 and HP15_2450 are separated by 30 nucleotides HP15_2447: HP15_2447 - magnesium transporter, at 2,583,682 to 2,585,043 _2447 HP15_2448: HP15_2448 - protein belonging to uncharacterized protein family UPF0307, at 2,585,059 to 2,585,586 _2448 HP15_2449: HP15_2449 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 2,585,596 to 2,586,441 _2449 HP15_2450: HP15_2450 - conserved hypothetical protein, at 2,586,472 to 2,590,227 _2450 Position (kb) 2585 2586 2587Strain fitness (log2 ratio) -2 -1 0 1at 2585.157 kb on - strand, within HP15_2448at 2585.189 kb on - strand, within HP15_2448at 2585.335 kb on - strand, within HP15_2448at 2585.549 kb on + strandat 2585.579 kb on - strandat 2585.685 kb on - strand, within HP15_2449at 2585.690 kb on - strand, within HP15_2449at 2585.723 kb on - strand, within HP15_2449at 2585.790 kb on + strand, within HP15_2449at 2585.880 kb on + strand, within HP15_2449at 2585.930 kb on - strand, within HP15_2449at 2586.130 kb on - strand, within HP15_2449at 2586.141 kb on + strand, within HP15_2449at 2586.149 kb on - strand, within HP15_2449at 2586.240 kb on + strand, within HP15_2449at 2586.631 kb on - strandat 2586.764 kb on - strandat 2586.835 kb on - strandat 2586.872 kb on + strand, within HP15_2450at 2586.938 kb on + strand, within HP15_2450at 2586.938 kb on + strand, within HP15_2450at 2587.035 kb on + strand, within HP15_2450at 2587.222 kb on - strand, within HP15_2450at 2587.363 kb on + strand, within HP15_2450

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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2,585,157 - HP15_2448 0.19 -0.8
2,585,189 - HP15_2448 0.25 +0.3
2,585,335 - HP15_2448 0.52 +0.5
2,585,549 + -1.6
2,585,579 - +0.0
2,585,685 - HP15_2449 0.11 -1.7
2,585,690 - HP15_2449 0.11 -1.3
2,585,723 - HP15_2449 0.15 -0.7
2,585,790 + HP15_2449 0.23 -1.6
2,585,880 + HP15_2449 0.34 -1.3
2,585,930 - HP15_2449 0.39 -2.4
2,586,130 - HP15_2449 0.63 -1.7
2,586,141 + HP15_2449 0.64 -2.0
2,586,149 - HP15_2449 0.65 -1.6
2,586,240 + HP15_2449 0.76 -2.0
2,586,631 - -0.8
2,586,764 - +0.7
2,586,835 - -0.4
2,586,872 + HP15_2450 0.11 -0.1
2,586,938 + HP15_2450 0.12 +0.7
2,586,938 + HP15_2450 0.12 +1.4
2,587,035 + HP15_2450 0.15 +0.2
2,587,222 - HP15_2450 0.20 -0.2
2,587,363 + HP15_2450 0.24 -0.1

Or see this region's nucleotide sequence