Strain Fitness in Marinobacter adhaerens HP15 around HP15_4048

Experiment: pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4047 and HP15_4048 are separated by 40 nucleotidesHP15_4048 and HP15_4049 are separated by 21 nucleotides HP15_4047: HP15_4047 - metallo-beta-lactamase family protein, at 4,280,217 to 4,281,599 _4047 HP15_4048: HP15_4048 - extracellular solute-binding protein, family 3, at 4,281,640 to 4,282,404 _4048 HP15_4049: HP15_4049 - HD-GYP domain protein, at 4,282,426 to 4,283,808 _4049 Position (kb) 4281 4282 4283Strain fitness (log2 ratio) -2 -1 0 1 2at 4280.654 kb on - strand, within HP15_4047at 4280.663 kb on + strand, within HP15_4047at 4280.682 kb on - strand, within HP15_4047at 4280.689 kb on - strand, within HP15_4047at 4280.793 kb on - strand, within HP15_4047at 4280.848 kb on - strand, within HP15_4047at 4280.904 kb on - strand, within HP15_4047at 4280.957 kb on + strand, within HP15_4047at 4280.965 kb on - strand, within HP15_4047at 4280.965 kb on - strand, within HP15_4047at 4281.049 kb on + strand, within HP15_4047at 4281.150 kb on - strand, within HP15_4047at 4281.162 kb on + strand, within HP15_4047at 4281.170 kb on - strand, within HP15_4047at 4281.170 kb on - strand, within HP15_4047at 4281.170 kb on - strand, within HP15_4047at 4281.189 kb on - strand, within HP15_4047at 4281.228 kb on - strand, within HP15_4047at 4281.237 kb on + strand, within HP15_4047at 4281.312 kb on - strand, within HP15_4047at 4281.312 kb on - strand, within HP15_4047at 4281.393 kb on + strand, within HP15_4047at 4281.455 kb on + strand, within HP15_4047at 4281.468 kb on + strandat 4281.476 kb on - strandat 4281.486 kb on - strandat 4281.621 kb on - strandat 4281.677 kb on - strandat 4281.689 kb on + strandat 4281.727 kb on + strand, within HP15_4048at 4281.732 kb on + strand, within HP15_4048at 4281.740 kb on - strand, within HP15_4048at 4282.272 kb on + strand, within HP15_4048at 4282.272 kb on + strand, within HP15_4048at 4282.277 kb on + strand, within HP15_4048at 4282.295 kb on + strand, within HP15_4048at 4282.381 kb on + strandat 4282.382 kb on - strandat 4282.382 kb on - strandat 4282.382 kb on - strandat 4282.382 kb on - strandat 4282.454 kb on - strandat 4282.564 kb on + strandat 4282.576 kb on + strand, within HP15_4049at 4282.709 kb on + strand, within HP15_4049at 4282.712 kb on - strand, within HP15_4049at 4282.760 kb on + strand, within HP15_4049at 4282.979 kb on + strand, within HP15_4049at 4283.006 kb on + strand, within HP15_4049at 4283.165 kb on + strand, within HP15_4049at 4283.275 kb on + strand, within HP15_4049at 4283.283 kb on - strand, within HP15_4049at 4283.307 kb on - strand, within HP15_4049

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
remove
4,280,654 - HP15_4047 0.32 +0.5
4,280,663 + HP15_4047 0.32 -0.4
4,280,682 - HP15_4047 0.34 +0.1
4,280,689 - HP15_4047 0.34 -1.9
4,280,793 - HP15_4047 0.42 +0.1
4,280,848 - HP15_4047 0.46 -0.6
4,280,904 - HP15_4047 0.50 +0.3
4,280,957 + HP15_4047 0.54 +1.3
4,280,965 - HP15_4047 0.54 -1.2
4,280,965 - HP15_4047 0.54 +0.1
4,281,049 + HP15_4047 0.60 +0.4
4,281,150 - HP15_4047 0.67 -1.2
4,281,162 + HP15_4047 0.68 +0.8
4,281,170 - HP15_4047 0.69 +2.5
4,281,170 - HP15_4047 0.69 +1.6
4,281,170 - HP15_4047 0.69 -0.2
4,281,189 - HP15_4047 0.70 -1.4
4,281,228 - HP15_4047 0.73 -0.9
4,281,237 + HP15_4047 0.74 +0.3
4,281,312 - HP15_4047 0.79 -0.3
4,281,312 - HP15_4047 0.79 -0.7
4,281,393 + HP15_4047 0.85 -0.3
4,281,455 + HP15_4047 0.90 +0.7
4,281,468 + -0.3
4,281,476 - -0.8
4,281,486 - -1.4
4,281,621 - -0.6
4,281,677 - -0.6
4,281,689 + +0.1
4,281,727 + HP15_4048 0.11 +1.7
4,281,732 + HP15_4048 0.12 -0.6
4,281,740 - HP15_4048 0.13 -1.3
4,282,272 + HP15_4048 0.83 -0.7
4,282,272 + HP15_4048 0.83 -0.3
4,282,277 + HP15_4048 0.83 +1.3
4,282,295 + HP15_4048 0.86 -0.5
4,282,381 + +0.1
4,282,382 - +0.5
4,282,382 - -1.5
4,282,382 - -0.2
4,282,382 - +0.9
4,282,454 - +0.3
4,282,564 + +0.6
4,282,576 + HP15_4049 0.11 +0.1
4,282,709 + HP15_4049 0.20 +0.0
4,282,712 - HP15_4049 0.21 -0.8
4,282,760 + HP15_4049 0.24 -0.4
4,282,979 + HP15_4049 0.40 +0.7
4,283,006 + HP15_4049 0.42 +1.1
4,283,165 + HP15_4049 0.53 +0.5
4,283,275 + HP15_4049 0.61 +0.2
4,283,283 - HP15_4049 0.62 -0.0
4,283,307 - HP15_4049 0.64 +1.0

Or see this region's nucleotide sequence