Experiment: PYE 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00583 and CCNA_00585 are separated by 118 nucleotides CCNA_00585 and CCNA_00586 are separated by 35 nucleotides
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
CCNA_00586: CCNA_00586 - LytR/AlgR-family transcriptional regulator, at 614,415 to 615,746
_00586
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.343 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.371 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.404 kb on - strand, within CCNA_00583 at 612.411 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.461 kb on + strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.469 kb on - strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.595 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.657 kb on - strand, within CCNA_00583 at 612.677 kb on - strand, within CCNA_00583 at 612.724 kb on - strand, within CCNA_00583 at 612.756 kb on + strand, within CCNA_00583 at 612.762 kb on + strand, within CCNA_00583 at 612.829 kb on - strand, within CCNA_00583 at 612.830 kb on + strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.866 kb on - strand, within CCNA_00583 at 612.888 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.046 kb on - strand, within CCNA_00583 at 613.094 kb on - strand at 613.094 kb on - strand at 613.110 kb on - strand at 613.111 kb on - strand at 613.147 kb on + strand at 613.394 kb on + strand at 613.394 kb on + strand at 613.420 kb on + strand at 613.425 kb on + strand at 613.436 kb on + strand, within CCNA_00585 at 613.439 kb on - strand, within CCNA_00585 at 613.455 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.486 kb on - strand, within CCNA_00585 at 613.488 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.512 kb on + strand, within CCNA_00585 at 613.520 kb on - strand, within CCNA_00585 at 613.521 kb on - strand, within CCNA_00585 at 613.590 kb on + strand, within CCNA_00585 at 613.601 kb on + strand, within CCNA_00585 at 613.639 kb on + strand, within CCNA_00585 at 613.639 kb on - strand, within CCNA_00585 at 613.728 kb on - strand, within CCNA_00585 at 613.737 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.880 kb on - strand, within CCNA_00585 at 613.902 kb on - strand, within CCNA_00585 at 613.926 kb on + strand, within CCNA_00585 at 613.966 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 614.029 kb on - strand, within CCNA_00585 at 614.049 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.091 kb on + strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.095 kb on + strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.113 kb on - strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.130 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.211 kb on - strand, within CCNA_00585 at 614.222 kb on + strand, within CCNA_00585 at 614.222 kb on + strand, within CCNA_00585 at 614.230 kb on - strand, within CCNA_00585 at 614.261 kb on + strand, within CCNA_00585 at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.313 kb on + strand at 614.313 kb on + strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.345 kb on + strand at 614.407 kb on + strand at 614.407 kb on + strand at 614.415 kb on - strand at 614.438 kb on + strand at 614.444 kb on + strand at 614.454 kb on + strand at 614.454 kb on + strand at 614.454 kb on + strand at 614.462 kb on - strand at 614.462 kb on - strand at 614.502 kb on + strand at 614.512 kb on + strand at 614.631 kb on + strand, within CCNA_00586 at 614.654 kb on - strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.680 kb on - strand, within CCNA_00586 at 614.686 kb on - strand, within CCNA_00586 at 614.695 kb on + strand, within CCNA_00586 at 614.717 kb on + strand, within CCNA_00586 at 614.757 kb on + strand, within CCNA_00586 at 614.782 kb on + strand, within CCNA_00586 at 614.786 kb on + strand, within CCNA_00586 at 614.787 kb on + strand, within CCNA_00586 at 614.794 kb on - strand, within CCNA_00586 at 614.805 kb on + strand, within CCNA_00586 at 614.826 kb on - strand, within CCNA_00586 at 614.855 kb on + strand, within CCNA_00586 at 614.886 kb on - strand, within CCNA_00586 at 614.922 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.933 kb on + strand, within CCNA_00586 at 614.941 kb on - strand, within CCNA_00586 at 614.943 kb on + strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.985 kb on + strand, within CCNA_00586 at 615.016 kb on + strand, within CCNA_00586 at 615.069 kb on + strand, within CCNA_00586 at 615.071 kb on - strand, within CCNA_00586 at 615.077 kb on - strand, within CCNA_00586 at 615.079 kb on - strand, within CCNA_00586 at 615.082 kb on + strand, within CCNA_00586 at 615.086 kb on + strand, within CCNA_00586 at 615.189 kb on + strand, within CCNA_00586 at 615.217 kb on + strand, within CCNA_00586 at 615.222 kb on - strand, within CCNA_00586 at 615.236 kb on + strand, within CCNA_00586 at 615.244 kb on + strand, within CCNA_00586 at 615.260 kb on - strand, within CCNA_00586 at 615.284 kb on + strand, within CCNA_00586 at 615.293 kb on - strand, within CCNA_00586 at 615.340 kb on + strand, within CCNA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C remove 612,343 + CCNA_00583 0.37 +0.2 612,364 + CCNA_00583 0.38 -0.7 612,371 - CCNA_00583 0.39 +0.2 612,372 - CCNA_00583 0.39 +0.2 612,372 - CCNA_00583 0.39 -0.6 612,372 - CCNA_00583 0.39 +1.2 612,372 - CCNA_00583 0.39 -1.3 612,404 - CCNA_00583 0.41 +0.5 612,411 + CCNA_00583 0.42 +1.1 612,419 - CCNA_00583 0.42 -0.3 612,420 - CCNA_00583 0.43 -1.3 612,433 + CCNA_00583 0.43 -2.0 612,433 + CCNA_00583 0.43 -2.9 612,456 + CCNA_00583 0.45 +0.1 612,456 + CCNA_00583 0.45 -0.7 612,461 + CCNA_00583 0.46 -0.1 612,464 - CCNA_00583 0.46 -1.3 612,464 - CCNA_00583 0.46 +0.2 612,469 - CCNA_00583 0.46 -0.6 612,484 + CCNA_00583 0.47 -1.3 612,484 + CCNA_00583 0.47 -0.6 612,569 + CCNA_00583 0.53 -1.3 612,569 + CCNA_00583 0.53 -0.9 612,595 + CCNA_00583 0.55 -0.6 612,618 + CCNA_00583 0.57 -0.4 612,621 - CCNA_00583 0.57 +0.0 612,621 - CCNA_00583 0.57 +0.4 612,621 - +0.7 612,621 - CCNA_00583 0.57 -0.8 612,626 - CCNA_00583 0.58 -0.3 612,626 - CCNA_00583 0.58 +0.3 612,657 - CCNA_00583 0.60 -1.8 612,677 - CCNA_00583 0.61 -1.3 612,724 - CCNA_00583 0.65 +0.4 612,756 + CCNA_00583 0.67 +0.7 612,762 + CCNA_00583 0.68 +0.6 612,829 - CCNA_00583 0.72 -0.3 612,830 + CCNA_00583 0.73 +1.4 612,841 + CCNA_00583 0.73 -0.3 612,866 - CCNA_00583 0.75 -0.6 612,888 - CCNA_00583 0.77 +0.6 613,032 - CCNA_00583 0.87 -0.3 613,045 + CCNA_00583 0.88 +0.2 613,046 - CCNA_00583 0.88 -0.8 613,094 - -0.4 613,094 - +0.4 613,110 - -0.8 613,111 - -2.3 613,147 + -1.6 613,394 + +0.3 613,394 + +0.1 613,420 + -0.8 613,425 + -1.6 613,436 + CCNA_00585 0.11 -1.2 613,439 - CCNA_00585 0.11 -0.3 613,455 + CCNA_00585 0.12 +0.7 613,464 + CCNA_00585 0.13 -0.8 613,464 + CCNA_00585 0.13 -1.3 613,464 + CCNA_00585 0.13 -1.2 613,464 + CCNA_00585 0.13 +0.7 613,464 + CCNA_00585 0.13 -0.7 613,464 + CCNA_00585 0.13 -1.1 613,472 - CCNA_00585 0.14 +0.2 613,472 - CCNA_00585 0.14 +1.7 613,472 - CCNA_00585 0.14 -0.6 613,472 - CCNA_00585 0.14 +0.7 613,478 + CCNA_00585 0.15 +0.2 613,478 + CCNA_00585 0.15 -1.4 613,486 - CCNA_00585 0.15 -0.3 613,488 + CCNA_00585 0.16 +0.9 613,489 + CCNA_00585 0.16 -0.3 613,489 + CCNA_00585 0.16 +1.7 613,496 - CCNA_00585 0.16 +1.7 613,496 - CCNA_00585 0.16 -0.3 613,512 + CCNA_00585 0.18 -0.8 613,520 - CCNA_00585 0.19 +0.7 613,521 - CCNA_00585 0.19 +0.2 613,590 + CCNA_00585 0.25 -1.2 613,601 + CCNA_00585 0.26 +0.4 613,639 + CCNA_00585 0.30 +2.9 613,639 - CCNA_00585 0.30 -0.1 613,728 - CCNA_00585 0.38 -1.5 613,737 + CCNA_00585 0.39 -0.6 613,782 + CCNA_00585 0.43 +0.2 613,782 + CCNA_00585 0.43 -0.9 613,782 + CCNA_00585 0.43 -0.3 613,880 - CCNA_00585 0.53 +0.9 613,902 - CCNA_00585 0.55 -0.3 613,926 + CCNA_00585 0.57 -0.6 613,966 + CCNA_00585 0.61 -0.8 613,971 + CCNA_00585 0.61 +1.0 613,971 + CCNA_00585 0.61 +1.3 614,029 - CCNA_00585 0.67 -2.3 614,049 + CCNA_00585 0.69 -0.6 614,051 + CCNA_00585 0.69 +0.9 614,051 + CCNA_00585 0.69 -0.0 614,054 - CCNA_00585 0.69 -1.8 614,079 + CCNA_00585 0.71 -2.1 614,079 + CCNA_00585 0.71 +0.7 614,087 - CCNA_00585 0.72 -1.4 614,087 - CCNA_00585 0.72 -0.4 614,091 + CCNA_00585 0.73 +1.3 614,094 - CCNA_00585 0.73 +0.6 614,095 + CCNA_00585 0.73 -1.3 614,096 + CCNA_00585 0.73 -1.1 614,104 - CCNA_00585 0.74 -0.3 614,104 - CCNA_00585 0.74 -1.2 614,113 - CCNA_00585 0.75 -3.1 614,129 + CCNA_00585 0.76 -0.7 614,129 + CCNA_00585 0.76 +0.4 614,129 + CCNA_00585 0.76 -0.8 614,130 - CCNA_00585 0.76 +0.7 614,137 - CCNA_00585 0.77 +0.2 614,140 + CCNA_00585 0.77 +0.7 614,140 + CCNA_00585 0.77 +0.7 614,140 + CCNA_00585 0.77 +0.3 614,140 + CCNA_00585 0.77 -1.1 614,148 - CCNA_00585 0.78 +1.7 614,158 - CCNA_00585 0.79 -1.7 614,158 - CCNA_00585 0.79 -0.3 614,211 - CCNA_00585 0.84 -0.2 614,222 + CCNA_00585 0.85 +0.6 614,222 + CCNA_00585 0.85 +0.2 614,230 - CCNA_00585 0.86 -1.9 614,261 + CCNA_00585 0.89 -0.8 614,280 + -0.7 614,280 + -0.4 614,280 + +0.5 614,280 + -2.1 614,280 + -0.7 614,280 + -1.1 614,280 + +0.3 614,280 + +0.6 614,280 + -1.0 614,280 + +0.1 614,280 + +0.3 614,280 + +0.3 614,280 + +0.4 614,280 + +0.8 614,280 + +0.5 614,280 + +1.1 614,280 + -0.3 614,280 + -0.2 614,280 + -1.1 614,280 + -0.2 614,280 + -0.3 614,280 + +0.2 614,280 + -0.4 614,280 + -2.0 614,280 + +0.5 614,280 + -1.0 614,280 + +0.3 614,280 + +0.3 614,280 + +1.4 614,280 + -0.1 614,280 + -0.7 614,280 + -0.4 614,280 + -0.2 614,280 + -0.6 614,280 + -0.4 614,280 + -0.5 614,280 + -0.5 614,280 + +0.0 614,280 + -0.5 614,280 + -1.2 614,280 + -1.0 614,280 + -0.3 614,280 + -0.0 614,280 + -0.4 614,280 + +0.5 614,280 + +0.3 614,280 + +0.3 614,280 + -0.2 614,280 + -1.3 614,280 + -2.2 614,280 + -0.4 614,280 + +0.0 614,288 - -1.1 614,288 - -0.6 614,288 - +0.2 614,288 - -0.9 614,288 - +0.7 614,288 - +0.9 614,288 - +0.6 614,288 - -0.3 614,288 - +1.0 614,288 - +0.2 614,288 - -0.6 614,288 - +0.2 614,288 - -0.4 614,288 - -1.1 614,288 - -2.2 614,288 - +2.7 614,288 - +0.4 614,288 - -1.5 614,288 - -1.7 614,288 - +0.2 614,288 - +2.5 614,288 - -0.2 614,288 - -0.3 614,288 - +0.7 614,288 - +0.2 614,288 - -1.0 614,288 - +0.7 614,288 - +0.0 614,288 - -0.0 614,288 - +1.7 614,288 - -0.6 614,288 - +1.7 614,288 - +1.4 614,288 - -0.0 614,288 - -0.1 614,288 - -1.3 614,288 - +0.2 614,313 + +0.7 614,313 + +1.7 614,321 - +0.6 614,321 - +0.3 614,321 - -0.8 614,321 - -1.2 614,345 + +0.2 614,407 + -1.6 614,407 + +0.0 614,415 - +0.3 614,438 + -1.7 614,444 + -1.7 614,454 + +0.5 614,454 + -0.3 614,454 + +0.3 614,462 - -0.2 614,462 - -0.2 614,502 + -0.8 614,512 + +0.2 614,631 + CCNA_00586 0.16 -1.8 614,654 - CCNA_00586 0.18 -2.3 614,672 + CCNA_00586 0.19 +0.2 614,672 + CCNA_00586 0.19 +0.3 614,680 - CCNA_00586 0.20 -2.0 614,686 - CCNA_00586 0.20 -0.7 614,695 + CCNA_00586 0.21 +0.6 614,717 + CCNA_00586 0.23 -0.1 614,757 + CCNA_00586 0.26 +0.6 614,782 + CCNA_00586 0.28 +1.3 614,786 + CCNA_00586 0.28 -1.1 614,787 + CCNA_00586 0.28 +1.3 614,794 - CCNA_00586 0.28 -0.1 614,805 + CCNA_00586 0.29 -1.4 614,826 - CCNA_00586 0.31 -0.3 614,855 + CCNA_00586 0.33 +0.3 614,886 - CCNA_00586 0.35 -0.0 614,922 + CCNA_00586 0.38 +2.7 614,923 + CCNA_00586 0.38 +0.7 614,923 + CCNA_00586 0.38 +0.7 614,931 - CCNA_00586 0.39 -0.3 614,931 - CCNA_00586 0.39 -0.3 614,931 - CCNA_00586 0.39 +0.3 614,931 - CCNA_00586 0.39 +0.7 614,933 + CCNA_00586 0.39 -0.9 614,941 - CCNA_00586 0.39 -2.1 614,943 + CCNA_00586 0.40 +0.2 614,951 - CCNA_00586 0.40 -1.2 614,951 - CCNA_00586 0.40 -0.7 614,951 - CCNA_00586 0.40 -0.3 614,985 + CCNA_00586 0.43 +0.6 615,016 + CCNA_00586 0.45 -0.3 615,069 + CCNA_00586 0.49 -0.6 615,071 - CCNA_00586 0.49 +0.3 615,077 - CCNA_00586 0.50 -0.1 615,079 - CCNA_00586 0.50 +0.2 615,082 + CCNA_00586 0.50 -0.7 615,086 + CCNA_00586 0.50 +0.0 615,189 + CCNA_00586 0.58 -0.7 615,217 + CCNA_00586 0.60 -0.6 615,222 - CCNA_00586 0.61 +0.7 615,236 + CCNA_00586 0.62 +0.0 615,244 + CCNA_00586 0.62 +0.7 615,260 - CCNA_00586 0.63 -0.4 615,284 + CCNA_00586 0.65 +1.2 615,293 - CCNA_00586 0.66 -0.3 615,340 + CCNA_00586 0.69 -0.3
Or see this region's nucleotide sequence