Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3847 and Dshi_3848 are separated by 99 nucleotides Dshi_3848 and Dshi_3849 are separated by 27 nucleotides Dshi_3849 and Dshi_3850 are separated by 7 nucleotides Dshi_3850 and Dshi_3851 are separated by 63 nucleotides Dshi_3851 and Dshi_3852 are separated by 160 nucleotides
Dshi_3847: Dshi_3847 - ParB domain protein nuclease (RefSeq), at 54,662 to 55,786
_3847
Dshi_3848: Dshi_3848 - hypothetical protein (RefSeq), at 55,886 to 56,080
_3848
Dshi_3849: Dshi_3849 - hypothetical protein (RefSeq), at 56,108 to 56,320
_3849
Dshi_3850: Dshi_3850 - hypothetical protein (RefSeq), at 56,328 to 56,588
_3850
Dshi_3851: Dshi_3851 - hypothetical protein (RefSeq), at 56,652 to 56,915
_3851
Dshi_3852: Dshi_3852 - hypothetical protein (RefSeq), at 57,076 to 58,143
_3852
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.942 kb on - strand, within Dshi_3847 at 54.943 kb on + strand, within Dshi_3847 at 55.022 kb on - strand, within Dshi_3847 at 55.072 kb on + strand, within Dshi_3847 at 55.346 kb on + strand, within Dshi_3847 at 55.469 kb on - strand, within Dshi_3847 at 55.503 kb on - strand, within Dshi_3847 at 55.520 kb on + strand, within Dshi_3847 at 55.751 kb on - strand at 55.775 kb on - strand at 55.852 kb on + strand at 55.906 kb on + strand, within Dshi_3848 at 55.978 kb on - strand, within Dshi_3848 at 56.085 kb on - strand at 56.088 kb on + strand at 56.089 kb on + strand at 56.097 kb on - strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.106 kb on - strand at 56.108 kb on - strand at 56.108 kb on - strand at 56.113 kb on - strand at 56.114 kb on - strand at 56.127 kb on + strand at 56.132 kb on + strand, within Dshi_3849 at 56.155 kb on + strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.206 kb on + strand, within Dshi_3849 at 56.215 kb on - strand, within Dshi_3849 at 56.241 kb on + strand, within Dshi_3849 at 56.249 kb on - strand, within Dshi_3849 at 56.254 kb on - strand, within Dshi_3849 at 56.324 kb on + strand at 56.326 kb on + strand at 56.327 kb on - strand at 56.354 kb on + strand, within Dshi_3850 at 56.372 kb on - strand, within Dshi_3850 at 56.396 kb on + strand, within Dshi_3850 at 56.404 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.441 kb on - strand, within Dshi_3850 at 56.447 kb on - strand, within Dshi_3850 at 56.497 kb on - strand, within Dshi_3850 at 56.509 kb on + strand, within Dshi_3850 at 56.560 kb on + strand, within Dshi_3850 at 56.568 kb on - strand at 56.643 kb on + strand at 56.711 kb on + strand, within Dshi_3851 at 56.754 kb on + strand, within Dshi_3851 at 56.762 kb on - strand, within Dshi_3851 at 56.785 kb on - strand, within Dshi_3851 at 56.835 kb on + strand, within Dshi_3851 at 56.836 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.872 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.892 kb on - strand at 57.006 kb on + strand at 57.007 kb on + strand at 57.014 kb on - strand at 57.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 54,942 - Dshi_3847 0.25 +0.2 54,943 + Dshi_3847 0.25 +0.2 55,022 - Dshi_3847 0.32 +1.2 55,072 + Dshi_3847 0.36 -0.5 55,346 + Dshi_3847 0.61 +0.2 55,469 - Dshi_3847 0.72 -0.2 55,503 - Dshi_3847 0.75 +0.4 55,520 + Dshi_3847 0.76 +0.3 55,751 - -0.3 55,775 - +0.5 55,852 + +1.1 55,906 + Dshi_3848 0.10 -0.9 55,978 - Dshi_3848 0.47 -2.4 56,085 - -0.2 56,088 + -0.2 56,089 + -1.3 56,097 - -0.4 56,098 + +0.9 56,098 + -1.0 56,098 + -2.1 56,106 - -0.4 56,108 - +0.2 56,108 - -1.7 56,113 - +0.1 56,114 - +0.4 56,127 + +0.2 56,132 + Dshi_3849 0.11 -0.6 56,155 + Dshi_3849 0.22 -0.5 56,181 - Dshi_3849 0.34 -1.0 56,181 - Dshi_3849 0.34 +0.4 56,206 + Dshi_3849 0.46 +0.1 56,215 - Dshi_3849 0.50 -0.1 56,241 + Dshi_3849 0.62 -0.3 56,249 - Dshi_3849 0.66 -0.2 56,254 - Dshi_3849 0.69 -0.1 56,324 + -0.9 56,326 + -0.2 56,327 - -0.5 56,354 + Dshi_3850 0.10 -0.6 56,372 - Dshi_3850 0.17 +0.5 56,396 + Dshi_3850 0.26 +0.2 56,404 - Dshi_3850 0.29 -0.9 56,414 - Dshi_3850 0.33 -0.6 56,414 - Dshi_3850 0.33 +0.1 56,441 - Dshi_3850 0.43 -0.0 56,447 - Dshi_3850 0.46 -0.4 56,497 - Dshi_3850 0.65 -0.1 56,509 + Dshi_3850 0.69 +0.2 56,560 + Dshi_3850 0.89 +0.8 56,568 - +0.4 56,643 + -0.8 56,711 + Dshi_3851 0.22 +0.2 56,754 + Dshi_3851 0.39 -0.4 56,762 - Dshi_3851 0.42 -0.7 56,785 - Dshi_3851 0.50 -0.1 56,835 + Dshi_3851 0.69 -0.4 56,836 + Dshi_3851 0.70 -0.2 56,856 + Dshi_3851 0.77 +0.3 56,856 + Dshi_3851 0.77 -0.3 56,856 + Dshi_3851 0.77 -0.3 56,856 + Dshi_3851 0.77 +0.4 56,856 + Dshi_3851 0.77 +0.5 56,872 - Dshi_3851 0.83 +0.0 56,887 - Dshi_3851 0.89 -0.6 56,887 - Dshi_3851 0.89 +0.4 56,892 - -0.7 57,006 + -0.2 57,007 + +0.1 57,014 - -0.1 57,015 - +0.7
Or see this region's nucleotide sequence