Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2761 and Dshi_2762 are separated by 119 nucleotides Dshi_2762 and Dshi_2763 are separated by 67 nucleotides
Dshi_2761: Dshi_2761 - Citrate transporter (RefSeq), at 2,922,178 to 2,923,956
_2761
Dshi_2762: Dshi_2762 - protein of unknown function DUF28 (RefSeq), at 2,924,076 to 2,924,816
_2762
Dshi_2763: Dshi_2763 - Hemolysin-type calcium-binding region (RefSeq), at 2,924,884 to 2,926,548
_2763
Position (kb)
2924
2925 Strain fitness (log2 ratio)
-1
0
1 at 2923.172 kb on - strand, within Dshi_2761 at 2923.246 kb on + strand, within Dshi_2761 at 2923.374 kb on - strand, within Dshi_2761 at 2923.422 kb on - strand, within Dshi_2761 at 2923.422 kb on - strand, within Dshi_2761 at 2923.669 kb on - strand, within Dshi_2761 at 2923.710 kb on + strand, within Dshi_2761 at 2923.731 kb on - strand, within Dshi_2761 at 2923.783 kb on - strand at 2923.855 kb on - strand at 2923.872 kb on - strand at 2923.947 kb on - strand at 2923.977 kb on - strand at 2923.996 kb on - strand at 2924.015 kb on - strand at 2924.020 kb on - strand at 2924.025 kb on - strand at 2924.040 kb on - strand at 2924.166 kb on - strand, within Dshi_2762 at 2924.484 kb on + strand, within Dshi_2762 at 2924.629 kb on - strand, within Dshi_2762 at 2924.852 kb on + strand at 2924.888 kb on - strand at 2924.995 kb on - strand at 2925.438 kb on + strand, within Dshi_2763 at 2925.454 kb on - strand, within Dshi_2763 at 2925.530 kb on - strand, within Dshi_2763 at 2925.608 kb on + strand, within Dshi_2763 at 2925.608 kb on + strand, within Dshi_2763 at 2925.650 kb on + strand, within Dshi_2763 at 2925.650 kb on + strand, within Dshi_2763 at 2925.711 kb on + strand, within Dshi_2763 at 2925.810 kb on + strand, within Dshi_2763
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,923,172 - Dshi_2761 0.56 -0.2 2,923,246 + Dshi_2761 0.60 +0.4 2,923,374 - Dshi_2761 0.67 +0.2 2,923,422 - Dshi_2761 0.70 -0.4 2,923,422 - Dshi_2761 0.70 +0.2 2,923,669 - Dshi_2761 0.84 +0.1 2,923,710 + Dshi_2761 0.86 +0.1 2,923,731 - Dshi_2761 0.87 -0.2 2,923,783 - -0.2 2,923,855 - -0.0 2,923,872 - +0.3 2,923,947 - +1.3 2,923,977 - +0.5 2,923,996 - -0.0 2,924,015 - -0.2 2,924,020 - -0.9 2,924,025 - -1.0 2,924,040 - +0.2 2,924,166 - Dshi_2762 0.12 -0.2 2,924,484 + Dshi_2762 0.55 -1.0 2,924,629 - Dshi_2762 0.75 -1.7 2,924,852 + +0.4 2,924,888 - -0.5 2,924,995 - +1.3 2,925,438 + Dshi_2763 0.33 -0.1 2,925,454 - Dshi_2763 0.34 +0.7 2,925,530 - Dshi_2763 0.39 -0.4 2,925,608 + Dshi_2763 0.43 +0.1 2,925,608 + Dshi_2763 0.43 +0.3 2,925,650 + Dshi_2763 0.46 -0.6 2,925,650 + Dshi_2763 0.46 -0.0 2,925,711 + Dshi_2763 0.50 -0.2 2,925,810 + Dshi_2763 0.56 +0.7
Or see this region's nucleotide sequence