Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2610 and Dshi_2611 are separated by 43 nucleotides Dshi_2611 and Dshi_2612 are separated by 203 nucleotides Dshi_2612 and Dshi_2613 are separated by 55 nucleotides
Dshi_2610: Dshi_2610 - pseudouridine synthase, RluA family (RefSeq), at 2,773,631 to 2,774,674
_2610
Dshi_2611: Dshi_2611 - hypothetical protein (RefSeq), at 2,774,718 to 2,775,005
_2611
Dshi_2612: Dshi_2612 - Silent information regulator protein Sir2 (RefSeq), at 2,775,209 to 2,775,895
_2612
Dshi_2613: Dshi_2613 - protein tyrosine phosphatase (RefSeq), at 2,775,951 to 2,776,406
_2613
Position (kb)
2774
2775
2776 Strain fitness (log2 ratio)
-2
-1
0
1 at 2773.979 kb on + strand, within Dshi_2610 at 2774.217 kb on + strand, within Dshi_2610 at 2774.342 kb on + strand, within Dshi_2610 at 2774.561 kb on + strand, within Dshi_2610 at 2774.575 kb on - strand at 2774.875 kb on - strand, within Dshi_2611 at 2775.077 kb on + strand at 2775.178 kb on - strand at 2775.306 kb on - strand, within Dshi_2612 at 2775.306 kb on - strand, within Dshi_2612 at 2775.390 kb on + strand, within Dshi_2612 at 2775.465 kb on + strand, within Dshi_2612 at 2775.542 kb on - strand, within Dshi_2612 at 2775.623 kb on + strand, within Dshi_2612 at 2775.653 kb on - strand, within Dshi_2612 at 2775.700 kb on + strand, within Dshi_2612 at 2775.796 kb on + strand, within Dshi_2612 at 2775.859 kb on + strand at 2775.862 kb on - strand at 2775.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,773,979 + Dshi_2610 0.33 -2.2 2,774,217 + Dshi_2610 0.56 -0.5 2,774,342 + Dshi_2610 0.68 -0.9 2,774,561 + Dshi_2610 0.89 +0.3 2,774,575 - -1.1 2,774,875 - Dshi_2611 0.55 -0.6 2,775,077 + -0.5 2,775,178 - -0.4 2,775,306 - Dshi_2612 0.14 +0.5 2,775,306 - Dshi_2612 0.14 +0.0 2,775,390 + Dshi_2612 0.26 -0.2 2,775,465 + Dshi_2612 0.37 +0.5 2,775,542 - Dshi_2612 0.48 +0.4 2,775,623 + Dshi_2612 0.60 -1.1 2,775,653 - Dshi_2612 0.65 +0.3 2,775,700 + Dshi_2612 0.71 +1.0 2,775,796 + Dshi_2612 0.85 -1.9 2,775,859 + +0.3 2,775,862 - +0.3 2,775,972 + -0.2
Or see this region's nucleotide sequence