Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2405

Experiment: m.b. Cephalothin 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2404 and Dshi_2405 are separated by 85 nucleotidesDshi_2405 and Dshi_2406 are separated by 6 nucleotides Dshi_2404: Dshi_2404 - glycyl-tRNA synthetase, alpha subunit (RefSeq), at 2,540,624 to 2,541,607 _2404 Dshi_2405: Dshi_2405 - Peptidoglycan-binding domain 1 protein (RefSeq), at 2,541,693 to 2,543,423 _2405 Dshi_2406: Dshi_2406 - cation transporter (RefSeq), at 2,543,430 to 2,544,878 _2406 Position (kb) 2541 2542 2543 2544Strain fitness (log2 ratio) -2 -1 0 1at 2541.779 kb on + strandat 2542.147 kb on - strand, within Dshi_2405at 2542.247 kb on + strand, within Dshi_2405at 2542.294 kb on - strand, within Dshi_2405at 2542.307 kb on + strand, within Dshi_2405at 2542.400 kb on - strand, within Dshi_2405at 2542.958 kb on - strand, within Dshi_2405at 2542.997 kb on - strand, within Dshi_2405at 2543.131 kb on + strand, within Dshi_2405at 2543.139 kb on - strand, within Dshi_2405at 2543.230 kb on - strand, within Dshi_2405at 2543.426 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
remove
2,541,779 + +0.3
2,542,147 - Dshi_2405 0.26 +0.1
2,542,247 + Dshi_2405 0.32 -0.8
2,542,294 - Dshi_2405 0.35 -0.6
2,542,307 + Dshi_2405 0.35 -1.1
2,542,400 - Dshi_2405 0.41 -2.1
2,542,958 - Dshi_2405 0.73 -0.7
2,542,997 - Dshi_2405 0.75 +0.2
2,543,131 + Dshi_2405 0.83 +0.5
2,543,139 - Dshi_2405 0.84 -1.5
2,543,230 - Dshi_2405 0.89 -1.0
2,543,426 - +0.3

Or see this region's nucleotide sequence