Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2351

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2350 and Dshi_2351 overlap by 4 nucleotidesDshi_2351 and Dshi_2352 are separated by 170 nucleotides Dshi_2350: Dshi_2350 - molybdopterin binding domain (RefSeq), at 2,482,885 to 2,483,898 _2350 Dshi_2351: Dshi_2351 - protein of unknown function DUF182 (RefSeq), at 2,483,895 to 2,484,884 _2351 Dshi_2352: Dshi_2352 - Protein of unknown function DUF1800 (RefSeq), at 2,485,055 to 2,486,401 _2352 Position (kb) 2483 2484 2485Strain fitness (log2 ratio) -1 0 1at 2483.163 kb on - strand, within Dshi_2350at 2483.181 kb on + strand, within Dshi_2350at 2483.233 kb on + strand, within Dshi_2350at 2483.305 kb on + strand, within Dshi_2350at 2483.333 kb on - strand, within Dshi_2350at 2483.398 kb on - strand, within Dshi_2350at 2483.442 kb on - strand, within Dshi_2350at 2483.489 kb on + strand, within Dshi_2350at 2483.805 kb on - strandat 2483.810 kb on + strandat 2483.818 kb on - strandat 2483.843 kb on + strandat 2483.848 kb on + strandat 2484.060 kb on - strand, within Dshi_2351at 2484.170 kb on + strandat 2484.603 kb on + strand, within Dshi_2351at 2484.638 kb on + strand, within Dshi_2351at 2484.782 kb on - strand, within Dshi_2351at 2484.816 kb on + strandat 2484.846 kb on - strandat 2484.899 kb on - strandat 2484.903 kb on + strandat 2484.928 kb on + strandat 2485.163 kb on + strandat 2485.371 kb on - strand, within Dshi_2352at 2485.400 kb on + strand, within Dshi_2352at 2485.420 kb on + strand, within Dshi_2352at 2485.485 kb on - strand, within Dshi_2352at 2485.577 kb on - strand, within Dshi_2352at 2485.635 kb on + strand, within Dshi_2352at 2485.643 kb on - strand, within Dshi_2352at 2485.765 kb on + strand, within Dshi_2352at 2485.814 kb on + strand, within Dshi_2352at 2485.842 kb on - strand, within Dshi_2352

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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2,483,163 - Dshi_2350 0.27 -0.2
2,483,181 + Dshi_2350 0.29 +0.2
2,483,233 + Dshi_2350 0.34 +0.5
2,483,305 + Dshi_2350 0.41 +0.4
2,483,333 - Dshi_2350 0.44 -1.3
2,483,398 - Dshi_2350 0.51 +0.2
2,483,442 - Dshi_2350 0.55 +0.0
2,483,489 + Dshi_2350 0.60 +0.2
2,483,805 - +0.7
2,483,810 + -0.3
2,483,818 - -0.4
2,483,843 + -0.3
2,483,848 + -0.7
2,484,060 - Dshi_2351 0.17 -0.6
2,484,170 + -1.4
2,484,603 + Dshi_2351 0.72 -0.5
2,484,638 + Dshi_2351 0.75 -0.7
2,484,782 - Dshi_2351 0.90 -0.8
2,484,816 + +0.7
2,484,846 - -0.4
2,484,899 - -0.1
2,484,903 + +0.9
2,484,928 + -0.1
2,485,163 + -0.0
2,485,371 - Dshi_2352 0.23 -0.4
2,485,400 + Dshi_2352 0.26 -0.1
2,485,420 + Dshi_2352 0.27 +0.0
2,485,485 - Dshi_2352 0.32 +1.2
2,485,577 - Dshi_2352 0.39 +0.2
2,485,635 + Dshi_2352 0.43 +0.1
2,485,643 - Dshi_2352 0.44 +1.0
2,485,765 + Dshi_2352 0.53 +0.3
2,485,814 + Dshi_2352 0.56 +1.0
2,485,842 - Dshi_2352 0.58 -0.4

Or see this region's nucleotide sequence