Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2350 and Dshi_2351 overlap by 4 nucleotides Dshi_2351 and Dshi_2352 are separated by 170 nucleotides
Dshi_2350: Dshi_2350 - molybdopterin binding domain (RefSeq), at 2,482,885 to 2,483,898
_2350
Dshi_2351: Dshi_2351 - protein of unknown function DUF182 (RefSeq), at 2,483,895 to 2,484,884
_2351
Dshi_2352: Dshi_2352 - Protein of unknown function DUF1800 (RefSeq), at 2,485,055 to 2,486,401
_2352
Position (kb)
2483
2484
2485 Strain fitness (log2 ratio)
-1
0
1 at 2483.163 kb on - strand, within Dshi_2350 at 2483.181 kb on + strand, within Dshi_2350 at 2483.233 kb on + strand, within Dshi_2350 at 2483.305 kb on + strand, within Dshi_2350 at 2483.333 kb on - strand, within Dshi_2350 at 2483.398 kb on - strand, within Dshi_2350 at 2483.442 kb on - strand, within Dshi_2350 at 2483.489 kb on + strand, within Dshi_2350 at 2483.805 kb on - strand at 2483.810 kb on + strand at 2483.818 kb on - strand at 2483.843 kb on + strand at 2483.848 kb on + strand at 2484.060 kb on - strand, within Dshi_2351 at 2484.170 kb on + strand at 2484.603 kb on + strand, within Dshi_2351 at 2484.638 kb on + strand, within Dshi_2351 at 2484.782 kb on - strand, within Dshi_2351 at 2484.816 kb on + strand at 2484.846 kb on - strand at 2484.899 kb on - strand at 2484.903 kb on + strand at 2484.928 kb on + strand at 2485.163 kb on + strand at 2485.371 kb on - strand, within Dshi_2352 at 2485.400 kb on + strand, within Dshi_2352 at 2485.420 kb on + strand, within Dshi_2352 at 2485.485 kb on - strand, within Dshi_2352 at 2485.577 kb on - strand, within Dshi_2352 at 2485.635 kb on + strand, within Dshi_2352 at 2485.643 kb on - strand, within Dshi_2352 at 2485.765 kb on + strand, within Dshi_2352 at 2485.814 kb on + strand, within Dshi_2352 at 2485.842 kb on - strand, within Dshi_2352
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,483,163 - Dshi_2350 0.27 -0.2 2,483,181 + Dshi_2350 0.29 +0.2 2,483,233 + Dshi_2350 0.34 +0.5 2,483,305 + Dshi_2350 0.41 +0.4 2,483,333 - Dshi_2350 0.44 -1.3 2,483,398 - Dshi_2350 0.51 +0.2 2,483,442 - Dshi_2350 0.55 +0.0 2,483,489 + Dshi_2350 0.60 +0.2 2,483,805 - +0.7 2,483,810 + -0.3 2,483,818 - -0.4 2,483,843 + -0.3 2,483,848 + -0.7 2,484,060 - Dshi_2351 0.17 -0.6 2,484,170 + -1.4 2,484,603 + Dshi_2351 0.72 -0.5 2,484,638 + Dshi_2351 0.75 -0.7 2,484,782 - Dshi_2351 0.90 -0.8 2,484,816 + +0.7 2,484,846 - -0.4 2,484,899 - -0.1 2,484,903 + +0.9 2,484,928 + -0.1 2,485,163 + -0.0 2,485,371 - Dshi_2352 0.23 -0.4 2,485,400 + Dshi_2352 0.26 -0.1 2,485,420 + Dshi_2352 0.27 +0.0 2,485,485 - Dshi_2352 0.32 +1.2 2,485,577 - Dshi_2352 0.39 +0.2 2,485,635 + Dshi_2352 0.43 +0.1 2,485,643 - Dshi_2352 0.44 +1.0 2,485,765 + Dshi_2352 0.53 +0.3 2,485,814 + Dshi_2352 0.56 +1.0 2,485,842 - Dshi_2352 0.58 -0.4
Or see this region's nucleotide sequence