Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1944 and Dshi_1945 are separated by 31 nucleotides Dshi_1945 and Dshi_1946 are separated by 1 nucleotides Dshi_1946 and Dshi_1947 overlap by 11 nucleotides
Dshi_1944: Dshi_1944 - hypothetical protein (RefSeq), at 2,033,976 to 2,034,707
_1944
Dshi_1945: Dshi_1945 - inner-membrane translocator (RefSeq), at 2,034,739 to 2,035,683
_1945
Dshi_1946: Dshi_1946 - inner-membrane translocator (RefSeq), at 2,035,685 to 2,036,734
_1946
Dshi_1947: Dshi_1947 - ABC transporter related (RefSeq), at 2,036,724 to 2,038,268
_1947
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-1
0
1
2 at 2034.773 kb on - strand at 2034.776 kb on + strand at 2034.934 kb on - strand, within Dshi_1945 at 2034.948 kb on + strand, within Dshi_1945 at 2035.121 kb on - strand, within Dshi_1945 at 2035.130 kb on + strand, within Dshi_1945 at 2035.175 kb on + strand, within Dshi_1945 at 2035.706 kb on - strand at 2035.731 kb on + strand at 2035.741 kb on - strand at 2035.764 kb on - strand at 2036.147 kb on - strand, within Dshi_1946 at 2036.241 kb on + strand, within Dshi_1946 at 2036.343 kb on + strand, within Dshi_1946 at 2036.414 kb on - strand, within Dshi_1946 at 2036.439 kb on - strand, within Dshi_1946 at 2036.553 kb on + strand, within Dshi_1946 at 2036.694 kb on - strand at 2036.721 kb on + strand at 2036.780 kb on + strand at 2036.905 kb on - strand, within Dshi_1947 at 2037.034 kb on - strand, within Dshi_1947 at 2037.071 kb on + strand, within Dshi_1947 at 2037.071 kb on + strand, within Dshi_1947 at 2037.175 kb on + strand, within Dshi_1947 at 2037.179 kb on + strand, within Dshi_1947 at 2037.400 kb on - strand, within Dshi_1947 at 2037.574 kb on - strand, within Dshi_1947
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,034,773 - -0.3 2,034,776 + -1.7 2,034,934 - Dshi_1945 0.21 -0.0 2,034,948 + Dshi_1945 0.22 +1.1 2,035,121 - Dshi_1945 0.40 -0.0 2,035,130 + Dshi_1945 0.41 -0.5 2,035,175 + Dshi_1945 0.46 -0.5 2,035,706 - +1.7 2,035,731 + -0.2 2,035,741 - -1.4 2,035,764 - -0.4 2,036,147 - Dshi_1946 0.44 -0.2 2,036,241 + Dshi_1946 0.53 -0.0 2,036,343 + Dshi_1946 0.63 -1.2 2,036,414 - Dshi_1946 0.69 -1.1 2,036,439 - Dshi_1946 0.72 -0.7 2,036,553 + Dshi_1946 0.83 -0.0 2,036,694 - -0.2 2,036,721 + +0.0 2,036,780 + +0.4 2,036,905 - Dshi_1947 0.12 -0.4 2,037,034 - Dshi_1947 0.20 +2.4 2,037,071 + Dshi_1947 0.22 -1.3 2,037,071 + Dshi_1947 0.22 +0.9 2,037,175 + Dshi_1947 0.29 +0.3 2,037,179 + Dshi_1947 0.29 +1.4 2,037,400 - Dshi_1947 0.44 -0.3 2,037,574 - Dshi_1947 0.55 -1.4
Or see this region's nucleotide sequence