Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1389 and Dshi_1390 are separated by 30 nucleotides Dshi_1390 and Dshi_1391 are separated by 47 nucleotides Dshi_1391 and Dshi_1392 overlap by 4 nucleotides Dshi_1392 and Dshi_1393 are separated by 9 nucleotides
Dshi_1389: Dshi_1389 - deoxyribodipyrimidine photo-lyase, putative (RefSeq), at 1,442,883 to 1,444,100
_1389
Dshi_1390: Dshi_1390 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (RefSeq), at 1,444,131 to 1,444,565
_1390
Dshi_1391: Dshi_1391 - Mammalian cell entry related domain protein (RefSeq), at 1,444,613 to 1,445,059
_1391
Dshi_1392: Dshi_1392 - hypothetical protein (RefSeq), at 1,445,056 to 1,445,598
_1392
Dshi_1393: Dshi_1393 - hypothetical protein (RefSeq), at 1,445,608 to 1,446,195
_1393
Position (kb)
1444
1445
1446 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1443.722 kb on - strand, within Dshi_1389 at 1443.722 kb on - strand, within Dshi_1389 at 1443.841 kb on - strand, within Dshi_1389 at 1443.883 kb on + strand, within Dshi_1389 at 1443.883 kb on + strand, within Dshi_1389 at 1443.908 kb on + strand, within Dshi_1389 at 1444.739 kb on + strand, within Dshi_1391 at 1444.759 kb on - strand, within Dshi_1391 at 1444.997 kb on + strand, within Dshi_1391 at 1445.002 kb on + strand, within Dshi_1391 at 1445.013 kb on + strand, within Dshi_1391 at 1445.080 kb on + strand at 1445.088 kb on - strand at 1445.114 kb on + strand, within Dshi_1392 at 1445.501 kb on - strand, within Dshi_1392 at 1445.511 kb on - strand, within Dshi_1392 at 1445.573 kb on + strand at 1445.600 kb on - strand at 1445.632 kb on + strand at 1445.683 kb on - strand, within Dshi_1393 at 1445.724 kb on + strand, within Dshi_1393 at 1445.816 kb on - strand, within Dshi_1393 at 1445.846 kb on - strand, within Dshi_1393 at 1445.978 kb on - strand, within Dshi_1393 at 1446.025 kb on + strand, within Dshi_1393 at 1446.033 kb on - strand, within Dshi_1393
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 1,443,722 - Dshi_1389 0.69 +0.1 1,443,722 - Dshi_1389 0.69 -0.3 1,443,841 - Dshi_1389 0.79 +0.7 1,443,883 + Dshi_1389 0.82 +0.1 1,443,883 + Dshi_1389 0.82 -0.1 1,443,908 + Dshi_1389 0.84 +0.2 1,444,739 + Dshi_1391 0.28 -3.9 1,444,759 - Dshi_1391 0.33 -2.5 1,444,997 + Dshi_1391 0.86 -2.6 1,445,002 + Dshi_1391 0.87 -2.8 1,445,013 + Dshi_1391 0.89 -1.6 1,445,080 + +0.1 1,445,088 - -0.8 1,445,114 + Dshi_1392 0.11 -2.0 1,445,501 - Dshi_1392 0.82 -1.9 1,445,511 - Dshi_1392 0.84 -1.4 1,445,573 + -1.5 1,445,600 - -0.1 1,445,632 + -0.0 1,445,683 - Dshi_1393 0.13 +1.0 1,445,724 + Dshi_1393 0.20 -0.2 1,445,816 - Dshi_1393 0.35 +0.5 1,445,846 - Dshi_1393 0.40 -0.6 1,445,978 - Dshi_1393 0.63 +0.3 1,446,025 + Dshi_1393 0.71 +0.6 1,446,033 - Dshi_1393 0.72 +0.7
Or see this region's nucleotide sequence