Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0845 and Dshi_0846 are separated by 34 nucleotides Dshi_0846 and Dshi_0847 overlap by 4 nucleotides Dshi_0847 and Dshi_0848 overlap by 4 nucleotides Dshi_0848 and Dshi_0849 are separated by 125 nucleotides
Dshi_0845: Dshi_0845 - MATE efflux family protein (RefSeq), at 854,790 to 856,109
_0845
Dshi_0846: Dshi_0846 - arsenate reductase (RefSeq), at 856,144 to 856,491
_0846
Dshi_0847: Dshi_0847 - Dihydroorotate oxidase (RefSeq), at 856,488 to 857,546
_0847
Dshi_0848: Dshi_0848 - protein of unknown function DUF952 (RefSeq), at 857,543 to 857,878
_0848
Dshi_0849: Dshi_0849 - 5'-Nucleotidase domain protein (RefSeq), at 858,004 to 859,593
_0849
Position (kb) 856
857
858 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 855.515 kb on - strand, within Dshi_0845 at 855.534 kb on + strand, within Dshi_0845 at 855.655 kb on + strand, within Dshi_0845 at 855.732 kb on + strand, within Dshi_0845 at 855.771 kb on - strand, within Dshi_0845 at 855.861 kb on - strand, within Dshi_0845 at 856.087 kb on - strand at 856.284 kb on - strand, within Dshi_0846 at 856.314 kb on + strand, within Dshi_0846 at 856.345 kb on + strand, within Dshi_0846 at 856.345 kb on + strand, within Dshi_0846 at 856.353 kb on - strand, within Dshi_0846 at 856.429 kb on - strand, within Dshi_0846 at 856.439 kb on - strand, within Dshi_0846 at 856.475 kb on + strand at 856.482 kb on - strand at 856.505 kb on + strand at 856.560 kb on + strand at 856.608 kb on - strand, within Dshi_0847 at 856.618 kb on - strand, within Dshi_0847 at 856.622 kb on + strand, within Dshi_0847 at 856.623 kb on - strand, within Dshi_0847 at 856.672 kb on - strand, within Dshi_0847 at 856.968 kb on - strand, within Dshi_0847 at 856.968 kb on - strand, within Dshi_0847 at 856.969 kb on + strand, within Dshi_0847 at 857.103 kb on - strand, within Dshi_0847 at 857.277 kb on + strand, within Dshi_0847 at 857.341 kb on - strand, within Dshi_0847 at 857.388 kb on - strand, within Dshi_0847 at 857.443 kb on - strand at 857.463 kb on - strand at 857.611 kb on - strand, within Dshi_0848 at 857.673 kb on - strand, within Dshi_0848 at 857.934 kb on + strand at 858.046 kb on - strand at 858.051 kb on - strand at 858.194 kb on - strand, within Dshi_0849 at 858.307 kb on - strand, within Dshi_0849
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 855,515 - Dshi_0845 0.55 +0.7 855,534 + Dshi_0845 0.56 -0.2 855,655 + Dshi_0845 0.66 +0.8 855,732 + Dshi_0845 0.71 -0.4 855,771 - Dshi_0845 0.74 -0.2 855,861 - Dshi_0845 0.81 +0.2 856,087 - -1.2 856,284 - Dshi_0846 0.40 +0.7 856,314 + Dshi_0846 0.49 -0.2 856,345 + Dshi_0846 0.58 -1.1 856,345 + Dshi_0846 0.58 +0.2 856,353 - Dshi_0846 0.60 -0.2 856,429 - Dshi_0846 0.82 -0.1 856,439 - Dshi_0846 0.85 -0.3 856,475 + -0.2 856,482 - -0.5 856,505 + -0.7 856,560 + -1.5 856,608 - Dshi_0847 0.11 -2.6 856,618 - Dshi_0847 0.12 -2.0 856,622 + Dshi_0847 0.13 -1.7 856,623 - Dshi_0847 0.13 -0.8 856,672 - Dshi_0847 0.17 -2.1 856,968 - Dshi_0847 0.45 -2.4 856,968 - Dshi_0847 0.45 -4.3 856,969 + Dshi_0847 0.45 -2.7 857,103 - Dshi_0847 0.58 -3.2 857,277 + Dshi_0847 0.75 -0.8 857,341 - Dshi_0847 0.81 -0.8 857,388 - Dshi_0847 0.85 -2.5 857,443 - -3.4 857,463 - -2.9 857,611 - Dshi_0848 0.20 -2.6 857,673 - Dshi_0848 0.39 -1.9 857,934 + +1.1 858,046 - -0.2 858,051 - -1.2 858,194 - Dshi_0849 0.12 -1.4 858,307 - Dshi_0849 0.19 +0.2
Or see this region's nucleotide sequence