Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0191

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0189 and Dshi_0190 are separated by 3 nucleotidesDshi_0190 and Dshi_0191 are separated by 10 nucleotidesDshi_0191 and Dshi_0192 are separated by 118 nucleotidesDshi_0192 and Dshi_0193 are separated by 77 nucleotides Dshi_0189: Dshi_0189 - cytochrome c class I (RefSeq), at 190,754 to 191,188 _0189 Dshi_0190: Dshi_0190 - membrane protein-like protein (RefSeq), at 191,192 to 191,707 _0190 Dshi_0191: Dshi_0191 - protein of unknown function DUF88 (RefSeq), at 191,718 to 192,290 _0191 Dshi_0192: Dshi_0192 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 192,409 to 192,978 _0192 Dshi_0193: Dshi_0193 - DNA-directed RNA polymerase, omega subunit (RefSeq), at 193,056 to 193,412 _0193 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.727 kb on + strandat 190.728 kb on - strandat 190.738 kb on + strandat 190.786 kb on + strandat 190.792 kb on + strandat 190.822 kb on + strand, within Dshi_0189at 190.862 kb on + strand, within Dshi_0189at 190.869 kb on - strand, within Dshi_0189at 190.891 kb on - strand, within Dshi_0189at 190.893 kb on + strand, within Dshi_0189at 190.901 kb on - strand, within Dshi_0189at 191.061 kb on - strand, within Dshi_0189at 191.130 kb on - strand, within Dshi_0189at 191.146 kb on + strandat 191.156 kb on + strandat 191.175 kb on - strandat 191.214 kb on + strandat 191.221 kb on - strandat 191.222 kb on - strandat 191.327 kb on + strand, within Dshi_0190at 191.327 kb on + strand, within Dshi_0190at 191.327 kb on + strand, within Dshi_0190at 191.335 kb on - strand, within Dshi_0190at 191.342 kb on + strand, within Dshi_0190at 191.389 kb on - strand, within Dshi_0190at 191.431 kb on - strand, within Dshi_0190at 191.460 kb on + strand, within Dshi_0190at 191.465 kb on + strand, within Dshi_0190at 191.465 kb on + strand, within Dshi_0190at 191.473 kb on - strand, within Dshi_0190at 191.473 kb on - strand, within Dshi_0190at 191.473 kb on - strand, within Dshi_0190at 191.532 kb on + strand, within Dshi_0190at 191.539 kb on + strand, within Dshi_0190at 191.547 kb on - strand, within Dshi_0190at 191.609 kb on - strand, within Dshi_0190at 191.611 kb on - strand, within Dshi_0190at 191.634 kb on + strand, within Dshi_0190at 191.642 kb on - strand, within Dshi_0190at 191.849 kb on + strand, within Dshi_0191at 191.866 kb on + strand, within Dshi_0191at 191.869 kb on - strand, within Dshi_0191at 191.888 kb on - strand, within Dshi_0191at 191.901 kb on - strand, within Dshi_0191at 191.908 kb on - strand, within Dshi_0191at 191.950 kb on + strand, within Dshi_0191at 191.958 kb on + strand, within Dshi_0191at 191.998 kb on + strand, within Dshi_0191at 192.010 kb on + strand, within Dshi_0191at 192.018 kb on - strand, within Dshi_0191at 192.018 kb on - strand, within Dshi_0191at 192.029 kb on - strand, within Dshi_0191at 192.035 kb on - strand, within Dshi_0191at 192.039 kb on + strand, within Dshi_0191at 192.040 kb on + strand, within Dshi_0191at 192.044 kb on + strand, within Dshi_0191at 192.093 kb on + strand, within Dshi_0191at 192.117 kb on + strand, within Dshi_0191at 192.140 kb on + strand, within Dshi_0191at 192.142 kb on + strand, within Dshi_0191at 192.185 kb on - strand, within Dshi_0191at 192.197 kb on + strand, within Dshi_0191at 192.205 kb on - strand, within Dshi_0191at 192.209 kb on + strand, within Dshi_0191at 192.217 kb on - strand, within Dshi_0191at 192.235 kb on + strandat 192.235 kb on + strandat 192.235 kb on + strandat 192.243 kb on + strandat 192.243 kb on - strandat 192.243 kb on - strandat 192.243 kb on - strandat 192.253 kb on + strandat 192.261 kb on - strandat 192.263 kb on + strandat 192.266 kb on - strandat 192.271 kb on - strandat 192.271 kb on - strandat 192.271 kb on - strandat 192.271 kb on - strandat 192.369 kb on - strandat 192.374 kb on - strandat 192.374 kb on - strandat 192.378 kb on + strandat 192.379 kb on - strandat 192.381 kb on + strandat 192.397 kb on + strandat 192.397 kb on + strandat 192.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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190,727 + -0.3
190,728 - -0.2
190,738 + +0.3
190,786 + +0.4
190,792 + +0.4
190,822 + Dshi_0189 0.16 +1.7
190,862 + Dshi_0189 0.25 -1.1
190,869 - Dshi_0189 0.26 -0.5
190,891 - Dshi_0189 0.31 +0.4
190,893 + Dshi_0189 0.32 -1.0
190,901 - Dshi_0189 0.34 -0.2
191,061 - Dshi_0189 0.71 +1.4
191,130 - Dshi_0189 0.86 -0.4
191,146 + +0.8
191,156 + -0.3
191,175 - -0.3
191,214 + +0.1
191,221 - -0.1
191,222 - +0.6
191,327 + Dshi_0190 0.26 -0.3
191,327 + Dshi_0190 0.26 -0.5
191,327 + Dshi_0190 0.26 -0.2
191,335 - Dshi_0190 0.28 -0.9
191,342 + Dshi_0190 0.29 +0.4
191,389 - Dshi_0190 0.38 +0.2
191,431 - Dshi_0190 0.46 +0.4
191,460 + Dshi_0190 0.52 -0.3
191,465 + Dshi_0190 0.53 -0.8
191,465 + Dshi_0190 0.53 -0.6
191,473 - Dshi_0190 0.54 -0.2
191,473 - Dshi_0190 0.54 +0.7
191,473 - Dshi_0190 0.54 +2.0
191,532 + Dshi_0190 0.66 -0.9
191,539 + Dshi_0190 0.67 -0.4
191,547 - Dshi_0190 0.69 -0.7
191,609 - Dshi_0190 0.81 +0.2
191,611 - Dshi_0190 0.81 -0.3
191,634 + Dshi_0190 0.86 -0.2
191,642 - Dshi_0190 0.87 -0.4
191,849 + Dshi_0191 0.23 -2.8
191,866 + Dshi_0191 0.26 -1.1
191,869 - Dshi_0191 0.26 -1.2
191,888 - Dshi_0191 0.30 -0.8
191,901 - Dshi_0191 0.32 +0.4
191,908 - Dshi_0191 0.33 +0.1
191,950 + Dshi_0191 0.40 -0.6
191,958 + Dshi_0191 0.42 -1.4
191,998 + Dshi_0191 0.49 -2.2
192,010 + Dshi_0191 0.51 -1.2
192,018 - Dshi_0191 0.52 -0.2
192,018 - Dshi_0191 0.52 -1.8
192,029 - Dshi_0191 0.54 -3.1
192,035 - Dshi_0191 0.55 -1.8
192,039 + Dshi_0191 0.56 -2.4
192,040 + Dshi_0191 0.56 -0.6
192,044 + Dshi_0191 0.57 -1.4
192,093 + Dshi_0191 0.65 -1.4
192,117 + Dshi_0191 0.70 -1.5
192,140 + Dshi_0191 0.74 +0.6
192,142 + Dshi_0191 0.74 -2.7
192,185 - Dshi_0191 0.82 -0.9
192,197 + Dshi_0191 0.84 -1.2
192,205 - Dshi_0191 0.85 -0.3
192,209 + Dshi_0191 0.86 -2.1
192,217 - Dshi_0191 0.87 -1.3
192,235 + -2.6
192,235 + -1.6
192,235 + -1.2
192,243 + -0.6
192,243 - -1.5
192,243 - -1.6
192,243 - -0.1
192,253 + +0.1
192,261 - -1.6
192,263 + -1.6
192,266 - -0.9
192,271 - -1.2
192,271 - -0.9
192,271 - -0.4
192,271 - -1.4
192,369 - -1.4
192,374 - -1.3
192,374 - -1.1
192,378 + -2.2
192,379 - -0.3
192,381 + -1.6
192,397 + -1.4
192,397 + -0.7
192,399 + +0.4

Or see this region's nucleotide sequence