Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0660 and SO0661 are separated by 96 nucleotides SO0661 and SO0662 overlap by 4 nucleotides SO0662 and SO0663 overlap by 1 nucleotides SO0663 and SO0664 are separated by 2 nucleotides SO0664 and SO0665 overlap by 11 nucleotides SO0665 and SO0666 overlap by 1 nucleotides
SO0660: SO0660 - hypothetical protein (NCBI ptt file), at 681,154 to 681,759
SO0660
SO0661: SO0661 - zinc finger-related protein (NCBI ptt file), at 681,856 to 682,068
SO0661
SO0662: SO0662 - conserved hypothetical protein (NCBI ptt file), at 682,065 to 682,412
SO0662
SO0663: SO0663 - conserved hypothetical protein (NCBI ptt file), at 682,412 to 682,708
SO0663
SO0664: SO0664 - hypothetical protein (NCBI ptt file), at 682,711 to 682,983
SO0664
SO0665: SO0665 - conserved hypothetical protein (NCBI ptt file), at 682,973 to 683,539
SO0665
SO0666: SO0666 - prophage MuSo1, portal protein, putative (NCBI ptt file), at 683,539 to 685,179
SO0666
Position (kb) 682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.443 kb on + strand, within SO0660 at 681.450 kb on + strand, within SO0660 at 681.614 kb on + strand, within SO0660 at 681.622 kb on - strand, within SO0660 at 681.622 kb on - strand, within SO0660 at 681.643 kb on - strand, within SO0660 at 681.656 kb on - strand, within SO0660 at 681.769 kb on + strand at 681.777 kb on - strand at 681.791 kb on - strand at 681.819 kb on - strand at 681.881 kb on + strand, within SO0661 at 681.937 kb on + strand, within SO0661 at 681.951 kb on + strand, within SO0661 at 681.973 kb on - strand, within SO0661 at 682.050 kb on - strand at 682.154 kb on + strand, within SO0662 at 682.302 kb on + strand, within SO0662 at 682.405 kb on - strand at 682.505 kb on - strand, within SO0663 at 682.655 kb on + strand, within SO0663 at 682.800 kb on + strand, within SO0664 at 682.838 kb on - strand, within SO0664 at 682.865 kb on - strand, within SO0664 at 682.890 kb on + strand, within SO0664 at 683.003 kb on + strand at 683.044 kb on - strand, within SO0665 at 683.148 kb on - strand, within SO0665 at 683.173 kb on + strand, within SO0665 at 683.181 kb on - strand, within SO0665 at 683.237 kb on - strand, within SO0665 at 683.242 kb on - strand, within SO0665 at 683.340 kb on + strand, within SO0665 at 683.348 kb on - strand, within SO0665 at 683.358 kb on - strand, within SO0665 at 683.426 kb on + strand, within SO0665 at 683.483 kb on + strand at 683.491 kb on - strand at 683.491 kb on - strand at 683.491 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 681,443 + SO0660 0.48 -0.5 681,450 + SO0660 0.49 -1.7 681,614 + SO0660 0.76 -0.9 681,622 - SO0660 0.77 -0.3 681,622 - SO0660 0.77 +0.1 681,643 - SO0660 0.81 +0.9 681,656 - SO0660 0.83 -0.0 681,769 + -0.9 681,777 - +0.6 681,791 - +0.2 681,819 - -0.4 681,881 + SO0661 0.12 -0.7 681,937 + SO0661 0.38 -0.9 681,951 + SO0661 0.45 +0.8 681,973 - SO0661 0.55 +0.9 682,050 - +0.6 682,154 + SO0662 0.26 +0.6 682,302 + SO0662 0.68 -0.1 682,405 - -0.6 682,505 - SO0663 0.31 +0.8 682,655 + SO0663 0.82 +2.5 682,800 + SO0664 0.33 -1.8 682,838 - SO0664 0.47 +0.4 682,865 - SO0664 0.56 -0.7 682,890 + SO0664 0.66 +2.2 683,003 + -0.3 683,044 - SO0665 0.13 +0.8 683,148 - SO0665 0.31 +1.8 683,173 + SO0665 0.35 +0.1 683,181 - SO0665 0.37 -1.4 683,237 - SO0665 0.47 -1.3 683,242 - SO0665 0.47 +0.8 683,340 + SO0665 0.65 +0.5 683,348 - SO0665 0.66 -0.4 683,358 - SO0665 0.68 -0.6 683,426 + SO0665 0.80 -0.3 683,483 + +0.6 683,491 - -0.2 683,491 - -0.1 683,491 - +0.3
Or see this region's nucleotide sequence