Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4600 and mtr are separated by 212 nucleotides mtr and plsB are separated by 4 nucleotides
SO4600: SO4600 - antigen, putative (NCBI ptt file), at 4,794,347 to 4,795,129
SO4600
SO4601: mtr - tryptophan-specific transport protein (NCBI ptt file), at 4,795,342 to 4,796,586
mtr
SO4602: plsB - glycerol-3-phosphate acyltransferase (NCBI ptt file), at 4,796,591 to 4,799,020
plsB
Position (kb) 4795
4796
4797 Strain fitness (log2 ratio) -1
0
1
2 at 4794.385 kb on + strand at 4794.453 kb on - strand, within SO4600 at 4794.457 kb on + strand, within SO4600 at 4794.458 kb on - strand, within SO4600 at 4794.465 kb on - strand, within SO4600 at 4794.465 kb on - strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.660 kb on - strand, within SO4600 at 4794.692 kb on + strand, within SO4600 at 4794.692 kb on + strand, within SO4600 at 4794.695 kb on - strand, within SO4600 at 4794.761 kb on + strand, within SO4600 at 4794.834 kb on - strand, within SO4600 at 4794.924 kb on - strand, within SO4600 at 4794.924 kb on - strand, within SO4600 at 4795.112 kb on + strand at 4795.124 kb on + strand at 4795.125 kb on - strand at 4795.165 kb on - strand at 4795.314 kb on + strand at 4795.411 kb on - strand at 4795.413 kb on + strand at 4795.421 kb on - strand at 4795.490 kb on - strand, within mtr at 4795.691 kb on - strand, within mtr at 4795.788 kb on + strand, within mtr at 4795.803 kb on - strand, within mtr at 4796.107 kb on + strand, within mtr at 4796.107 kb on - strand, within mtr at 4796.118 kb on + strand, within mtr at 4796.135 kb on - strand, within mtr at 4796.144 kb on + strand, within mtr at 4796.144 kb on + strand, within mtr at 4796.165 kb on + strand, within mtr at 4796.222 kb on - strand, within mtr at 4796.278 kb on + strand, within mtr at 4796.342 kb on - strand, within mtr at 4796.342 kb on - strand, within mtr at 4796.475 kb on - strand at 4796.506 kb on + strand at 4796.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 4,794,385 + +1.1 4,794,453 - SO4600 0.14 -0.4 4,794,457 + SO4600 0.14 +0.2 4,794,458 - SO4600 0.14 +0.0 4,794,465 - SO4600 0.15 +0.7 4,794,465 - SO4600 0.15 -1.0 4,794,508 + SO4600 0.21 -0.7 4,794,508 + SO4600 0.21 -0.3 4,794,508 + SO4600 0.21 +0.2 4,794,508 + SO4600 0.21 -0.4 4,794,516 - SO4600 0.22 +0.1 4,794,516 - SO4600 0.22 +1.2 4,794,516 - SO4600 0.22 +0.0 4,794,516 - SO4600 0.22 -0.2 4,794,516 - SO4600 0.22 +0.7 4,794,516 - SO4600 0.22 +0.2 4,794,660 - SO4600 0.40 -0.4 4,794,692 + SO4600 0.44 +0.8 4,794,692 + SO4600 0.44 -1.3 4,794,695 - SO4600 0.44 +0.4 4,794,761 + SO4600 0.53 +0.6 4,794,834 - SO4600 0.62 -0.2 4,794,924 - SO4600 0.74 -0.2 4,794,924 - SO4600 0.74 -0.2 4,795,112 + -0.2 4,795,124 + +0.2 4,795,125 - -0.2 4,795,165 - +0.2 4,795,314 + +0.5 4,795,411 - +1.7 4,795,413 + +1.5 4,795,421 - +1.3 4,795,490 - mtr SO4601 0.12 +1.8 4,795,691 - mtr SO4601 0.28 +1.9 4,795,788 + mtr SO4601 0.36 -0.1 4,795,803 - mtr SO4601 0.37 +1.9 4,796,107 + mtr SO4601 0.61 +2.0 4,796,107 - mtr SO4601 0.61 +1.6 4,796,118 + mtr SO4601 0.62 +1.2 4,796,135 - mtr SO4601 0.64 +1.4 4,796,144 + mtr SO4601 0.64 +1.4 4,796,144 + mtr SO4601 0.64 +0.7 4,796,165 + mtr SO4601 0.66 +1.4 4,796,222 - mtr SO4601 0.71 +1.2 4,796,278 + mtr SO4601 0.75 +1.6 4,796,342 - mtr SO4601 0.80 +1.4 4,796,342 - mtr SO4601 0.80 +0.8 4,796,475 - +2.4 4,796,506 + +1.0 4,796,507 + +1.4
Or see this region's nucleotide sequence