Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16095 and HMPREF1058_RS0119365 are separated by 16 nucleotides HMPREF1058_RS0119365 and HMPREF1058_RS16090 are separated by 159 nucleotides HMPREF1058_RS16090 and HMPREF1058_RS16085 are separated by 289 nucleotides
HMPREF1058_RS16095: HMPREF1058_RS16095 - putative DNA binding domain-containing protein, at 757,145 to 758,686
_RS16095
HMPREF1058_RS0119365: HMPREF1058_RS0119365 - hypothetical protein, at 758,703 to 759,420
_RS0119365
HMPREF1058_RS16090: HMPREF1058_RS16090 - haloacid dehalogenase-like hydrolase, at 759,580 to 760,686
_RS16090
HMPREF1058_RS16085: HMPREF1058_RS16085 - hypothetical protein, at 760,976 to 762,733
_RS16085
Position (kb) 759
760
761 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 758.614 kb on + strand at 758.677 kb on + strand at 758.826 kb on + strand, within HMPREF1058_RS0119365 at 758.858 kb on + strand, within HMPREF1058_RS0119365 at 758.859 kb on - strand, within HMPREF1058_RS0119365 at 758.861 kb on - strand, within HMPREF1058_RS0119365 at 758.895 kb on - strand, within HMPREF1058_RS0119365 at 758.895 kb on - strand, within HMPREF1058_RS0119365 at 758.939 kb on - strand, within HMPREF1058_RS0119365 at 759.114 kb on + strand, within HMPREF1058_RS0119365 at 759.114 kb on + strand, within HMPREF1058_RS0119365 at 759.119 kb on - strand, within HMPREF1058_RS0119365 at 759.139 kb on + strand, within HMPREF1058_RS0119365 at 759.202 kb on - strand, within HMPREF1058_RS0119365 at 759.221 kb on - strand, within HMPREF1058_RS0119365 at 759.234 kb on + strand, within HMPREF1058_RS0119365 at 759.235 kb on - strand, within HMPREF1058_RS0119365 at 759.239 kb on + strand, within HMPREF1058_RS0119365 at 759.261 kb on - strand, within HMPREF1058_RS0119365 at 759.266 kb on - strand, within HMPREF1058_RS0119365 at 759.451 kb on + strand at 759.452 kb on - strand at 759.472 kb on - strand at 759.626 kb on - strand at 759.628 kb on - strand at 759.630 kb on - strand at 759.799 kb on + strand, within HMPREF1058_RS16090 at 759.799 kb on + strand, within HMPREF1058_RS16090 at 759.831 kb on + strand, within HMPREF1058_RS16090 at 759.835 kb on + strand, within HMPREF1058_RS16090 at 760.035 kb on + strand, within HMPREF1058_RS16090 at 760.047 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.055 kb on - strand, within HMPREF1058_RS16090 at 760.055 kb on - strand, within HMPREF1058_RS16090 at 760.076 kb on - strand, within HMPREF1058_RS16090 at 760.077 kb on + strand, within HMPREF1058_RS16090 at 760.077 kb on + strand, within HMPREF1058_RS16090 at 760.077 kb on + strand, within HMPREF1058_RS16090 at 760.078 kb on - strand, within HMPREF1058_RS16090 at 760.078 kb on - strand, within HMPREF1058_RS16090 at 760.079 kb on + strand, within HMPREF1058_RS16090 at 760.079 kb on + strand, within HMPREF1058_RS16090 at 760.079 kb on + strand, within HMPREF1058_RS16090 at 760.080 kb on - strand, within HMPREF1058_RS16090 at 760.080 kb on - strand, within HMPREF1058_RS16090 at 760.080 kb on - strand, within HMPREF1058_RS16090 at 760.082 kb on - strand, within HMPREF1058_RS16090 at 760.086 kb on + strand, within HMPREF1058_RS16090 at 760.153 kb on + strand, within HMPREF1058_RS16090 at 760.154 kb on - strand, within HMPREF1058_RS16090 at 760.200 kb on - strand, within HMPREF1058_RS16090 at 760.204 kb on - strand, within HMPREF1058_RS16090 at 760.207 kb on - strand, within HMPREF1058_RS16090 at 760.245 kb on - strand, within HMPREF1058_RS16090 at 760.300 kb on + strand, within HMPREF1058_RS16090 at 760.300 kb on + strand, within HMPREF1058_RS16090 at 760.331 kb on + strand, within HMPREF1058_RS16090 at 760.331 kb on + strand, within HMPREF1058_RS16090 at 760.332 kb on - strand, within HMPREF1058_RS16090 at 760.344 kb on + strand, within HMPREF1058_RS16090 at 760.371 kb on + strand, within HMPREF1058_RS16090 at 760.381 kb on - strand, within HMPREF1058_RS16090 at 760.446 kb on + strand, within HMPREF1058_RS16090 at 760.451 kb on - strand, within HMPREF1058_RS16090 at 760.576 kb on + strand at 760.576 kb on + strand at 760.577 kb on - strand at 760.577 kb on - strand at 760.577 kb on - strand at 760.578 kb on + strand at 760.578 kb on + strand at 760.580 kb on + strand at 760.580 kb on + strand at 760.581 kb on - strand at 760.581 kb on - strand at 760.629 kb on - strand at 760.633 kb on + strand at 760.651 kb on - strand at 760.691 kb on + strand at 760.691 kb on + strand at 760.721 kb on + strand at 760.743 kb on + strand at 760.744 kb on - strand at 760.889 kb on - strand at 760.906 kb on + strand at 760.981 kb on + strand at 761.058 kb on - strand at 761.065 kb on - strand at 761.155 kb on - strand at 761.165 kb on + strand, within HMPREF1058_RS16085 at 761.166 kb on - strand, within HMPREF1058_RS16085 at 761.200 kb on + strand, within HMPREF1058_RS16085 at 761.207 kb on + strand, within HMPREF1058_RS16085 at 761.219 kb on + strand, within HMPREF1058_RS16085 at 761.229 kb on - strand, within HMPREF1058_RS16085 at 761.229 kb on - strand, within HMPREF1058_RS16085 at 761.282 kb on - strand, within HMPREF1058_RS16085 at 761.307 kb on - strand, within HMPREF1058_RS16085 at 761.309 kb on - strand, within HMPREF1058_RS16085 at 761.330 kb on - strand, within HMPREF1058_RS16085 at 761.339 kb on + strand, within HMPREF1058_RS16085 at 761.343 kb on - strand, within HMPREF1058_RS16085 at 761.343 kb on - strand, within HMPREF1058_RS16085 at 761.343 kb on - strand, within HMPREF1058_RS16085 at 761.405 kb on + strand, within HMPREF1058_RS16085 at 761.545 kb on + strand, within HMPREF1058_RS16085 at 761.553 kb on - strand, within HMPREF1058_RS16085 at 761.563 kb on + strand, within HMPREF1058_RS16085 at 761.594 kb on + strand, within HMPREF1058_RS16085 at 761.599 kb on + strand, within HMPREF1058_RS16085 at 761.601 kb on + strand, within HMPREF1058_RS16085
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 remove 758,614 + -1.4 758,677 + -0.1 758,826 + HMPREF1058_RS0119365 0.17 -1.1 758,858 + HMPREF1058_RS0119365 0.22 +2.7 758,859 - HMPREF1058_RS0119365 0.22 +0.8 758,861 - HMPREF1058_RS0119365 0.22 +0.9 758,895 - HMPREF1058_RS0119365 0.27 +0.5 758,895 - HMPREF1058_RS0119365 0.27 -2.2 758,939 - HMPREF1058_RS0119365 0.33 +0.2 759,114 + HMPREF1058_RS0119365 0.57 +0.6 759,114 + HMPREF1058_RS0119365 0.57 +1.5 759,119 - HMPREF1058_RS0119365 0.58 -3.2 759,139 + HMPREF1058_RS0119365 0.61 -1.3 759,202 - HMPREF1058_RS0119365 0.69 +0.4 759,221 - HMPREF1058_RS0119365 0.72 -0.2 759,234 + HMPREF1058_RS0119365 0.74 -1.4 759,235 - HMPREF1058_RS0119365 0.74 -1.9 759,239 + HMPREF1058_RS0119365 0.75 +0.5 759,261 - HMPREF1058_RS0119365 0.78 -1.0 759,266 - HMPREF1058_RS0119365 0.78 -1.6 759,451 + +0.9 759,452 - -0.4 759,472 - +1.4 759,626 - -0.5 759,628 - +0.3 759,630 - -1.4 759,799 + HMPREF1058_RS16090 0.20 +1.4 759,799 + HMPREF1058_RS16090 0.20 +2.5 759,831 + HMPREF1058_RS16090 0.23 +1.4 759,835 + HMPREF1058_RS16090 0.23 -1.2 760,035 + HMPREF1058_RS16090 0.41 -0.9 760,047 + HMPREF1058_RS16090 0.42 +1.9 760,054 + HMPREF1058_RS16090 0.43 +0.6 760,054 + HMPREF1058_RS16090 0.43 -0.1 760,054 + HMPREF1058_RS16090 0.43 -0.3 760,054 + HMPREF1058_RS16090 0.43 -0.2 760,054 + HMPREF1058_RS16090 0.43 +1.8 760,055 - HMPREF1058_RS16090 0.43 +0.0 760,055 - HMPREF1058_RS16090 0.43 -2.6 760,076 - HMPREF1058_RS16090 0.45 -1.2 760,077 + HMPREF1058_RS16090 0.45 -0.7 760,077 + HMPREF1058_RS16090 0.45 -0.6 760,077 + HMPREF1058_RS16090 0.45 +0.1 760,078 - HMPREF1058_RS16090 0.45 +2.9 760,078 - HMPREF1058_RS16090 0.45 +0.3 760,079 + HMPREF1058_RS16090 0.45 +1.9 760,079 + HMPREF1058_RS16090 0.45 -1.4 760,079 + HMPREF1058_RS16090 0.45 -2.6 760,080 - HMPREF1058_RS16090 0.45 +1.5 760,080 - HMPREF1058_RS16090 0.45 +2.5 760,080 - HMPREF1058_RS16090 0.45 +1.5 760,082 - HMPREF1058_RS16090 0.45 +2.3 760,086 + HMPREF1058_RS16090 0.46 +0.3 760,153 + HMPREF1058_RS16090 0.52 -0.5 760,154 - HMPREF1058_RS16090 0.52 -0.2 760,200 - HMPREF1058_RS16090 0.56 -0.8 760,204 - HMPREF1058_RS16090 0.56 +0.7 760,207 - HMPREF1058_RS16090 0.57 -4.0 760,245 - HMPREF1058_RS16090 0.60 +1.8 760,300 + HMPREF1058_RS16090 0.65 -1.1 760,300 + HMPREF1058_RS16090 0.65 +0.1 760,331 + HMPREF1058_RS16090 0.68 +0.4 760,331 + HMPREF1058_RS16090 0.68 -0.3 760,332 - HMPREF1058_RS16090 0.68 -0.8 760,344 + HMPREF1058_RS16090 0.69 +0.4 760,371 + HMPREF1058_RS16090 0.71 -0.5 760,381 - HMPREF1058_RS16090 0.72 +0.7 760,446 + HMPREF1058_RS16090 0.78 -0.6 760,451 - HMPREF1058_RS16090 0.79 +0.8 760,576 + +1.0 760,576 + -1.8 760,577 - +0.7 760,577 - -0.3 760,577 - -2.3 760,578 + +0.4 760,578 + +1.0 760,580 + +2.3 760,580 + -0.5 760,581 - +1.5 760,581 - +0.9 760,629 - +3.5 760,633 + -0.5 760,651 - +0.8 760,691 + +2.7 760,691 + -1.9 760,721 + +1.8 760,743 + -1.1 760,744 - -0.5 760,889 - +2.1 760,906 + -1.1 760,981 + -0.7 761,058 - -0.5 761,065 - +0.6 761,155 - -1.1 761,165 + HMPREF1058_RS16085 0.11 +0.1 761,166 - HMPREF1058_RS16085 0.11 +1.2 761,200 + HMPREF1058_RS16085 0.13 +0.2 761,207 + HMPREF1058_RS16085 0.13 +0.5 761,219 + HMPREF1058_RS16085 0.14 -0.1 761,229 - HMPREF1058_RS16085 0.14 -2.4 761,229 - HMPREF1058_RS16085 0.14 +1.5 761,282 - HMPREF1058_RS16085 0.17 +0.7 761,307 - HMPREF1058_RS16085 0.19 -0.1 761,309 - HMPREF1058_RS16085 0.19 +1.7 761,330 - HMPREF1058_RS16085 0.20 +1.1 761,339 + HMPREF1058_RS16085 0.21 +1.5 761,343 - HMPREF1058_RS16085 0.21 +0.9 761,343 - HMPREF1058_RS16085 0.21 -1.1 761,343 - HMPREF1058_RS16085 0.21 -0.9 761,405 + HMPREF1058_RS16085 0.24 -3.7 761,545 + HMPREF1058_RS16085 0.32 +1.5 761,553 - HMPREF1058_RS16085 0.33 -1.7 761,563 + HMPREF1058_RS16085 0.33 -1.1 761,594 + HMPREF1058_RS16085 0.35 -1.7 761,599 + HMPREF1058_RS16085 0.35 -1.1 761,601 + HMPREF1058_RS16085 0.36 +0.7
Or see this region's nucleotide sequence