Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17675 and HMPREF1058_RS17670 are separated by 287 nucleotides HMPREF1058_RS17670 and HMPREF1058_RS17665 overlap by 7 nucleotides HMPREF1058_RS17665 and HMPREF1058_RS20425 overlap by 56 nucleotides HMPREF1058_RS20425 and HMPREF1058_RS17660 are separated by 140 nucleotides HMPREF1058_RS17660 and HMPREF1058_RS17655 are separated by 70 nucleotides
HMPREF1058_RS17675: HMPREF1058_RS17675 - mechanosensitive ion channel, at 371,966 to 373,315
_RS17675
HMPREF1058_RS17670: HMPREF1058_RS17670 - hypothetical protein, at 373,603 to 373,806
_RS17670
HMPREF1058_RS17665: HMPREF1058_RS17665 - hypothetical protein, at 373,800 to 374,003
_RS17665
HMPREF1058_RS20425: HMPREF1058_RS20425 - left-handed beta-roll domain-containing protein, at 373,948 to 374,070
_RS20425
HMPREF1058_RS17660: HMPREF1058_RS17660 - tRNA-Arg, at 374,211 to 374,284
_RS17660
HMPREF1058_RS17655: HMPREF1058_RS17655 - AbgT family transporter, at 374,355 to 375,071
_RS17655
Position (kb) 373
374
375 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 372.914 kb on - strand, within HMPREF1058_RS17675 at 373.042 kb on + strand, within HMPREF1058_RS17675 at 373.043 kb on - strand, within HMPREF1058_RS17675 at 373.043 kb on - strand, within HMPREF1058_RS17675 at 373.087 kb on - strand, within HMPREF1058_RS17675 at 373.087 kb on - strand, within HMPREF1058_RS17675 at 373.120 kb on + strand, within HMPREF1058_RS17675 at 373.121 kb on - strand, within HMPREF1058_RS17675 at 373.154 kb on + strand, within HMPREF1058_RS17675 at 373.155 kb on - strand, within HMPREF1058_RS17675 at 373.159 kb on - strand, within HMPREF1058_RS17675 at 373.310 kb on - strand at 373.320 kb on - strand at 373.330 kb on + strand at 373.334 kb on + strand at 373.334 kb on + strand at 373.335 kb on - strand at 373.423 kb on - strand at 373.470 kb on + strand at 373.505 kb on - strand at 373.507 kb on - strand at 373.564 kb on - strand at 373.666 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.722 kb on - strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.789 kb on + strand at 373.874 kb on - strand, within HMPREF1058_RS17665 at 373.905 kb on + strand, within HMPREF1058_RS17665 at 373.905 kb on + strand, within HMPREF1058_RS17665 at 374.105 kb on + strand at 374.105 kb on + strand at 374.105 kb on + strand at 374.108 kb on - strand at 374.108 kb on - strand at 374.431 kb on - strand, within HMPREF1058_RS17655 at 374.434 kb on + strand, within HMPREF1058_RS17655 at 374.560 kb on - strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.731 kb on - strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.749 kb on - strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.751 kb on - strand, within HMPREF1058_RS17655 at 374.984 kb on + strand, within HMPREF1058_RS17655
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 remove 372,914 - HMPREF1058_RS17675 0.70 -0.7 373,042 + HMPREF1058_RS17675 0.80 +0.5 373,043 - HMPREF1058_RS17675 0.80 -0.9 373,043 - HMPREF1058_RS17675 0.80 -2.0 373,087 - HMPREF1058_RS17675 0.83 +0.3 373,087 - HMPREF1058_RS17675 0.83 +0.6 373,120 + HMPREF1058_RS17675 0.85 -1.2 373,121 - HMPREF1058_RS17675 0.86 -3.7 373,154 + HMPREF1058_RS17675 0.88 -3.0 373,155 - HMPREF1058_RS17675 0.88 -1.0 373,159 - HMPREF1058_RS17675 0.88 +0.6 373,310 - -1.7 373,320 - +0.9 373,330 + -0.7 373,334 + -2.6 373,334 + -2.0 373,335 - +1.1 373,423 - +1.1 373,470 + +0.0 373,505 - +0.5 373,507 - -1.3 373,564 - -1.0 373,666 - HMPREF1058_RS17670 0.31 -1.6 373,688 - HMPREF1058_RS17670 0.42 +2.7 373,688 - HMPREF1058_RS17670 0.42 +2.6 373,688 - HMPREF1058_RS17670 0.42 +0.5 373,722 - HMPREF1058_RS17670 0.58 +2.6 373,772 + HMPREF1058_RS17670 0.83 +0.5 373,772 + HMPREF1058_RS17670 0.83 +1.5 373,772 + HMPREF1058_RS17670 0.83 +0.0 373,773 - HMPREF1058_RS17670 0.83 +0.0 373,773 - HMPREF1058_RS17670 0.83 +0.3 373,773 - HMPREF1058_RS17670 0.83 +0.9 373,789 + +1.8 373,874 - HMPREF1058_RS17665 0.36 -0.7 373,905 + HMPREF1058_RS17665 0.51 +1.1 373,905 + HMPREF1058_RS17665 0.51 -1.0 374,105 + +1.4 374,105 + +0.6 374,105 + +0.7 374,108 - +1.0 374,108 - -0.0 374,431 - HMPREF1058_RS17655 0.11 +0.8 374,434 + HMPREF1058_RS17655 0.11 +0.8 374,560 - HMPREF1058_RS17655 0.29 -0.8 374,567 + HMPREF1058_RS17655 0.30 -5.1 374,567 + HMPREF1058_RS17655 0.30 -1.0 374,642 - HMPREF1058_RS17655 0.40 -0.7 374,642 - HMPREF1058_RS17655 0.40 +0.7 374,731 - HMPREF1058_RS17655 0.52 +0.0 374,735 + HMPREF1058_RS17655 0.53 +0.8 374,735 + HMPREF1058_RS17655 0.53 +2.6 374,749 - HMPREF1058_RS17655 0.55 -0.2 374,750 + HMPREF1058_RS17655 0.55 +0.2 374,750 + HMPREF1058_RS17655 0.55 -2.8 374,751 - HMPREF1058_RS17655 0.55 -1.6 374,984 + HMPREF1058_RS17655 0.88 -3.0
Or see this region's nucleotide sequence