Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20250

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20240 and ABZR88_RS20245 are separated by 102 nucleotidesABZR88_RS20245 and ABZR88_RS20250 are separated by 128 nucleotidesABZR88_RS20250 and ABZR88_RS20255 are separated by 116 nucleotides ABZR88_RS20240: ABZR88_RS20240 - S1/P1 nuclease, at 4,911,229 to 4,912,020 _RS20240 ABZR88_RS20245: ABZR88_RS20245 - low molecular weight protein-tyrosine-phosphatase, at 4,912,123 to 4,912,557 _RS20245 ABZR88_RS20250: ABZR88_RS20250 - hypothetical protein, at 4,912,686 to 4,913,366 _RS20250 ABZR88_RS20255: ABZR88_RS20255 - prephenate dehydrogenase, at 4,913,483 to 4,914,739 _RS20255 Position (kb) 4912 4913 4914Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4911.770 kb on + strand, within ABZR88_RS20240at 4911.922 kb on + strand, within ABZR88_RS20240at 4912.051 kb on - strandat 4912.056 kb on - strandat 4912.058 kb on - strandat 4912.293 kb on + strand, within ABZR88_RS20245at 4912.305 kb on - strand, within ABZR88_RS20245at 4912.308 kb on + strand, within ABZR88_RS20245at 4912.384 kb on + strand, within ABZR88_RS20245at 4912.391 kb on - strand, within ABZR88_RS20245at 4912.492 kb on - strand, within ABZR88_RS20245at 4912.549 kb on + strandat 4912.555 kb on + strandat 4912.555 kb on + strandat 4912.556 kb on - strandat 4912.771 kb on - strand, within ABZR88_RS20250at 4912.905 kb on + strand, within ABZR88_RS20250at 4912.906 kb on - strand, within ABZR88_RS20250at 4912.906 kb on - strand, within ABZR88_RS20250at 4912.915 kb on + strand, within ABZR88_RS20250at 4912.934 kb on - strand, within ABZR88_RS20250at 4912.934 kb on - strand, within ABZR88_RS20250at 4912.935 kb on + strand, within ABZR88_RS20250at 4912.935 kb on + strand, within ABZR88_RS20250at 4912.956 kb on - strand, within ABZR88_RS20250at 4912.956 kb on - strand, within ABZR88_RS20250at 4913.065 kb on - strand, within ABZR88_RS20250at 4913.158 kb on + strand, within ABZR88_RS20250at 4913.473 kb on + strandat 4913.474 kb on - strandat 4913.559 kb on + strandat 4913.951 kb on - strand, within ABZR88_RS20255at 4914.018 kb on + strand, within ABZR88_RS20255at 4914.083 kb on + strand, within ABZR88_RS20255

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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4,911,770 + ABZR88_RS20240 0.68 +0.0
4,911,922 + ABZR88_RS20240 0.88 -0.9
4,912,051 - +0.3
4,912,056 - -0.2
4,912,058 - +0.3
4,912,293 + ABZR88_RS20245 0.39 +0.7
4,912,305 - ABZR88_RS20245 0.42 -1.3
4,912,308 + ABZR88_RS20245 0.43 -2.5
4,912,384 + ABZR88_RS20245 0.60 +3.3
4,912,391 - ABZR88_RS20245 0.62 -0.3
4,912,492 - ABZR88_RS20245 0.85 -1.2
4,912,549 + +0.0
4,912,555 + -0.4
4,912,555 + +0.8
4,912,556 - -0.2
4,912,771 - ABZR88_RS20250 0.12 +1.1
4,912,905 + ABZR88_RS20250 0.32 +1.2
4,912,906 - ABZR88_RS20250 0.32 +0.0
4,912,906 - ABZR88_RS20250 0.32 +0.0
4,912,915 + ABZR88_RS20250 0.34 -1.0
4,912,934 - ABZR88_RS20250 0.36 +0.8
4,912,934 - ABZR88_RS20250 0.36 -0.4
4,912,935 + ABZR88_RS20250 0.37 +1.7
4,912,935 + ABZR88_RS20250 0.37 +0.5
4,912,956 - ABZR88_RS20250 0.40 +0.6
4,912,956 - ABZR88_RS20250 0.40 +1.5
4,913,065 - ABZR88_RS20250 0.56 +1.5
4,913,158 + ABZR88_RS20250 0.69 +0.9
4,913,473 + +0.9
4,913,474 - -0.7
4,913,559 + +0.5
4,913,951 - ABZR88_RS20255 0.37 -0.4
4,914,018 + ABZR88_RS20255 0.43 +0.5
4,914,083 + ABZR88_RS20255 0.48 -1.4

Or see this region's nucleotide sequence