Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20240 and ABZR88_RS20245 are separated by 102 nucleotides ABZR88_RS20245 and ABZR88_RS20250 are separated by 128 nucleotides ABZR88_RS20250 and ABZR88_RS20255 are separated by 116 nucleotides
ABZR88_RS20240: ABZR88_RS20240 - S1/P1 nuclease, at 4,911,229 to 4,912,020
_RS20240
ABZR88_RS20245: ABZR88_RS20245 - low molecular weight protein-tyrosine-phosphatase, at 4,912,123 to 4,912,557
_RS20245
ABZR88_RS20250: ABZR88_RS20250 - hypothetical protein, at 4,912,686 to 4,913,366
_RS20250
ABZR88_RS20255: ABZR88_RS20255 - prephenate dehydrogenase, at 4,913,483 to 4,914,739
_RS20255
Position (kb)
4912
4913
4914 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4911.770 kb on + strand, within ABZR88_RS20240 at 4911.922 kb on + strand, within ABZR88_RS20240 at 4912.051 kb on - strand at 4912.056 kb on - strand at 4912.058 kb on - strand at 4912.293 kb on + strand, within ABZR88_RS20245 at 4912.305 kb on - strand, within ABZR88_RS20245 at 4912.308 kb on + strand, within ABZR88_RS20245 at 4912.384 kb on + strand, within ABZR88_RS20245 at 4912.391 kb on - strand, within ABZR88_RS20245 at 4912.492 kb on - strand, within ABZR88_RS20245 at 4912.549 kb on + strand at 4912.555 kb on + strand at 4912.555 kb on + strand at 4912.556 kb on - strand at 4912.771 kb on - strand, within ABZR88_RS20250 at 4912.905 kb on + strand, within ABZR88_RS20250 at 4912.906 kb on - strand, within ABZR88_RS20250 at 4912.906 kb on - strand, within ABZR88_RS20250 at 4912.915 kb on + strand, within ABZR88_RS20250 at 4912.934 kb on - strand, within ABZR88_RS20250 at 4912.934 kb on - strand, within ABZR88_RS20250 at 4912.935 kb on + strand, within ABZR88_RS20250 at 4912.935 kb on + strand, within ABZR88_RS20250 at 4912.956 kb on - strand, within ABZR88_RS20250 at 4912.956 kb on - strand, within ABZR88_RS20250 at 4913.065 kb on - strand, within ABZR88_RS20250 at 4913.158 kb on + strand, within ABZR88_RS20250 at 4913.473 kb on + strand at 4913.474 kb on - strand at 4913.559 kb on + strand at 4913.951 kb on - strand, within ABZR88_RS20255 at 4914.018 kb on + strand, within ABZR88_RS20255 at 4914.083 kb on + strand, within ABZR88_RS20255
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 4,911,770 + ABZR88_RS20240 0.68 +0.0 4,911,922 + ABZR88_RS20240 0.88 -0.9 4,912,051 - +0.3 4,912,056 - -0.2 4,912,058 - +0.3 4,912,293 + ABZR88_RS20245 0.39 +0.7 4,912,305 - ABZR88_RS20245 0.42 -1.3 4,912,308 + ABZR88_RS20245 0.43 -2.5 4,912,384 + ABZR88_RS20245 0.60 +3.3 4,912,391 - ABZR88_RS20245 0.62 -0.3 4,912,492 - ABZR88_RS20245 0.85 -1.2 4,912,549 + +0.0 4,912,555 + -0.4 4,912,555 + +0.8 4,912,556 - -0.2 4,912,771 - ABZR88_RS20250 0.12 +1.1 4,912,905 + ABZR88_RS20250 0.32 +1.2 4,912,906 - ABZR88_RS20250 0.32 +0.0 4,912,906 - ABZR88_RS20250 0.32 +0.0 4,912,915 + ABZR88_RS20250 0.34 -1.0 4,912,934 - ABZR88_RS20250 0.36 +0.8 4,912,934 - ABZR88_RS20250 0.36 -0.4 4,912,935 + ABZR88_RS20250 0.37 +1.7 4,912,935 + ABZR88_RS20250 0.37 +0.5 4,912,956 - ABZR88_RS20250 0.40 +0.6 4,912,956 - ABZR88_RS20250 0.40 +1.5 4,913,065 - ABZR88_RS20250 0.56 +1.5 4,913,158 + ABZR88_RS20250 0.69 +0.9 4,913,473 + +0.9 4,913,474 - -0.7 4,913,559 + +0.5 4,913,951 - ABZR88_RS20255 0.37 -0.4 4,914,018 + ABZR88_RS20255 0.43 +0.5 4,914,083 + ABZR88_RS20255 0.48 -1.4
Or see this region's nucleotide sequence