Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19840

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19830 and ABZR88_RS19835 are separated by 198 nucleotidesABZR88_RS19835 and ABZR88_RS19840 are separated by 19 nucleotidesABZR88_RS19840 and ABZR88_RS19845 are separated by 4 nucleotidesABZR88_RS19845 and ABZR88_RS19850 are separated by 171 nucleotides ABZR88_RS19830: ABZR88_RS19830 - SusC/RagA family TonB-linked outer membrane protein, at 4,815,626 to 4,818,754 _RS19830 ABZR88_RS19835: ABZR88_RS19835 - PadR family transcriptional regulator, at 4,818,953 to 4,819,300 _RS19835 ABZR88_RS19840: ABZR88_RS19840 - PspC domain-containing protein, at 4,819,320 to 4,821,020 _RS19840 ABZR88_RS19845: ABZR88_RS19845 - hypothetical protein, at 4,821,025 to 4,821,231 _RS19845 ABZR88_RS19850: ABZR88_RS19850 - outer membrane beta-barrel family protein, at 4,821,403 to 4,823,868 _RS19850 Position (kb) 4819 4820 4821 4822Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10 11 12 13at 4818.434 kb on + strand, within ABZR88_RS19830at 4818.438 kb on - strand, within ABZR88_RS19830at 4818.475 kb on + strandat 4818.567 kb on - strandat 4818.800 kb on + strandat 4819.020 kb on + strand, within ABZR88_RS19835at 4819.101 kb on - strand, within ABZR88_RS19835at 4819.182 kb on - strand, within ABZR88_RS19835at 4819.185 kb on - strand, within ABZR88_RS19835at 4819.399 kb on - strandat 4819.495 kb on + strand, within ABZR88_RS19840at 4819.495 kb on + strand, within ABZR88_RS19840at 4819.521 kb on - strand, within ABZR88_RS19840at 4819.820 kb on + strand, within ABZR88_RS19840at 4819.897 kb on + strand, within ABZR88_RS19840at 4820.045 kb on - strand, within ABZR88_RS19840at 4820.048 kb on + strand, within ABZR88_RS19840at 4820.048 kb on + strand, within ABZR88_RS19840at 4820.084 kb on + strand, within ABZR88_RS19840at 4820.100 kb on - strand, within ABZR88_RS19840at 4820.260 kb on - strand, within ABZR88_RS19840at 4820.262 kb on - strand, within ABZR88_RS19840at 4820.494 kb on + strand, within ABZR88_RS19840at 4820.564 kb on + strand, within ABZR88_RS19840at 4820.565 kb on - strand, within ABZR88_RS19840at 4820.584 kb on + strand, within ABZR88_RS19840at 4820.585 kb on - strand, within ABZR88_RS19840at 4820.948 kb on + strandat 4821.102 kb on + strand, within ABZR88_RS19845at 4821.321 kb on + strandat 4821.376 kb on - strandat 4821.426 kb on - strandat 4821.582 kb on + strandat 4821.643 kb on + strandat 4821.779 kb on + strand, within ABZR88_RS19850at 4821.906 kb on + strand, within ABZR88_RS19850at 4821.907 kb on - strand, within ABZR88_RS19850at 4821.921 kb on + strand, within ABZR88_RS19850at 4821.922 kb on - strand, within ABZR88_RS19850at 4821.963 kb on + strand, within ABZR88_RS19850

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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4,818,434 + ABZR88_RS19830 0.90 +13.2
4,818,438 - ABZR88_RS19830 0.90 +13.4
4,818,475 + +12.6
4,818,567 - +12.4
4,818,800 + +11.4
4,819,020 + ABZR88_RS19835 0.19 +10.9
4,819,101 - ABZR88_RS19835 0.43 +4.1
4,819,182 - ABZR88_RS19835 0.66 +6.6
4,819,185 - ABZR88_RS19835 0.67 +6.5
4,819,399 - -1.2
4,819,495 + ABZR88_RS19840 0.10 +2.3
4,819,495 + ABZR88_RS19840 0.10 +2.3
4,819,521 - ABZR88_RS19840 0.12 +3.3
4,819,820 + ABZR88_RS19840 0.29 +3.4
4,819,897 + ABZR88_RS19840 0.34 +2.9
4,820,045 - ABZR88_RS19840 0.43 +1.2
4,820,048 + ABZR88_RS19840 0.43 +3.1
4,820,048 + ABZR88_RS19840 0.43 +3.8
4,820,084 + ABZR88_RS19840 0.45 +3.5
4,820,100 - ABZR88_RS19840 0.46 +0.4
4,820,260 - ABZR88_RS19840 0.55 +0.7
4,820,262 - ABZR88_RS19840 0.55 +0.0
4,820,494 + ABZR88_RS19840 0.69 +2.7
4,820,564 + ABZR88_RS19840 0.73 +3.0
4,820,565 - ABZR88_RS19840 0.73 +0.4
4,820,584 + ABZR88_RS19840 0.74 +3.1
4,820,585 - ABZR88_RS19840 0.74 -0.2
4,820,948 + +5.7
4,821,102 + ABZR88_RS19845 0.37 +1.8
4,821,321 + +1.6
4,821,376 - -0.0
4,821,426 - +1.5
4,821,582 + +1.2
4,821,643 + +1.5
4,821,779 + ABZR88_RS19850 0.15 +2.3
4,821,906 + ABZR88_RS19850 0.20 -0.6
4,821,907 - ABZR88_RS19850 0.20 +0.5
4,821,921 + ABZR88_RS19850 0.21 +1.9
4,821,922 - ABZR88_RS19850 0.21 -0.0
4,821,963 + ABZR88_RS19850 0.23 +2.3

Or see this region's nucleotide sequence