Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19830 and ABZR88_RS19835 are separated by 198 nucleotides ABZR88_RS19835 and ABZR88_RS19840 are separated by 19 nucleotides ABZR88_RS19840 and ABZR88_RS19845 are separated by 4 nucleotides ABZR88_RS19845 and ABZR88_RS19850 are separated by 171 nucleotides
ABZR88_RS19830: ABZR88_RS19830 - SusC/RagA family TonB-linked outer membrane protein, at 4,815,626 to 4,818,754
_RS19830
ABZR88_RS19835: ABZR88_RS19835 - PadR family transcriptional regulator, at 4,818,953 to 4,819,300
_RS19835
ABZR88_RS19840: ABZR88_RS19840 - PspC domain-containing protein, at 4,819,320 to 4,821,020
_RS19840
ABZR88_RS19845: ABZR88_RS19845 - hypothetical protein, at 4,821,025 to 4,821,231
_RS19845
ABZR88_RS19850: ABZR88_RS19850 - outer membrane beta-barrel family protein, at 4,821,403 to 4,823,868
_RS19850
Position (kb)
4819
4820
4821
4822 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13 at 4818.434 kb on + strand, within ABZR88_RS19830 at 4818.438 kb on - strand, within ABZR88_RS19830 at 4818.475 kb on + strand at 4818.567 kb on - strand at 4818.800 kb on + strand at 4819.020 kb on + strand, within ABZR88_RS19835 at 4819.101 kb on - strand, within ABZR88_RS19835 at 4819.182 kb on - strand, within ABZR88_RS19835 at 4819.185 kb on - strand, within ABZR88_RS19835 at 4819.399 kb on - strand at 4819.495 kb on + strand, within ABZR88_RS19840 at 4819.495 kb on + strand, within ABZR88_RS19840 at 4819.521 kb on - strand, within ABZR88_RS19840 at 4819.820 kb on + strand, within ABZR88_RS19840 at 4819.897 kb on + strand, within ABZR88_RS19840 at 4820.045 kb on - strand, within ABZR88_RS19840 at 4820.048 kb on + strand, within ABZR88_RS19840 at 4820.048 kb on + strand, within ABZR88_RS19840 at 4820.084 kb on + strand, within ABZR88_RS19840 at 4820.100 kb on - strand, within ABZR88_RS19840 at 4820.260 kb on - strand, within ABZR88_RS19840 at 4820.262 kb on - strand, within ABZR88_RS19840 at 4820.494 kb on + strand, within ABZR88_RS19840 at 4820.564 kb on + strand, within ABZR88_RS19840 at 4820.565 kb on - strand, within ABZR88_RS19840 at 4820.584 kb on + strand, within ABZR88_RS19840 at 4820.585 kb on - strand, within ABZR88_RS19840 at 4820.948 kb on + strand at 4821.102 kb on + strand, within ABZR88_RS19845 at 4821.321 kb on + strand at 4821.376 kb on - strand at 4821.426 kb on - strand at 4821.582 kb on + strand at 4821.643 kb on + strand at 4821.779 kb on + strand, within ABZR88_RS19850 at 4821.906 kb on + strand, within ABZR88_RS19850 at 4821.907 kb on - strand, within ABZR88_RS19850 at 4821.921 kb on + strand, within ABZR88_RS19850 at 4821.922 kb on - strand, within ABZR88_RS19850 at 4821.963 kb on + strand, within ABZR88_RS19850
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 4,818,434 + ABZR88_RS19830 0.90 +13.2 4,818,438 - ABZR88_RS19830 0.90 +13.4 4,818,475 + +12.6 4,818,567 - +12.4 4,818,800 + +11.4 4,819,020 + ABZR88_RS19835 0.19 +10.9 4,819,101 - ABZR88_RS19835 0.43 +4.1 4,819,182 - ABZR88_RS19835 0.66 +6.6 4,819,185 - ABZR88_RS19835 0.67 +6.5 4,819,399 - -1.2 4,819,495 + ABZR88_RS19840 0.10 +2.3 4,819,495 + ABZR88_RS19840 0.10 +2.3 4,819,521 - ABZR88_RS19840 0.12 +3.3 4,819,820 + ABZR88_RS19840 0.29 +3.4 4,819,897 + ABZR88_RS19840 0.34 +2.9 4,820,045 - ABZR88_RS19840 0.43 +1.2 4,820,048 + ABZR88_RS19840 0.43 +3.1 4,820,048 + ABZR88_RS19840 0.43 +3.8 4,820,084 + ABZR88_RS19840 0.45 +3.5 4,820,100 - ABZR88_RS19840 0.46 +0.4 4,820,260 - ABZR88_RS19840 0.55 +0.7 4,820,262 - ABZR88_RS19840 0.55 +0.0 4,820,494 + ABZR88_RS19840 0.69 +2.7 4,820,564 + ABZR88_RS19840 0.73 +3.0 4,820,565 - ABZR88_RS19840 0.73 +0.4 4,820,584 + ABZR88_RS19840 0.74 +3.1 4,820,585 - ABZR88_RS19840 0.74 -0.2 4,820,948 + +5.7 4,821,102 + ABZR88_RS19845 0.37 +1.8 4,821,321 + +1.6 4,821,376 - -0.0 4,821,426 - +1.5 4,821,582 + +1.2 4,821,643 + +1.5 4,821,779 + ABZR88_RS19850 0.15 +2.3 4,821,906 + ABZR88_RS19850 0.20 -0.6 4,821,907 - ABZR88_RS19850 0.20 +0.5 4,821,921 + ABZR88_RS19850 0.21 +1.9 4,821,922 - ABZR88_RS19850 0.21 -0.0 4,821,963 + ABZR88_RS19850 0.23 +2.3
Or see this region's nucleotide sequence