Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01810 and ABZR88_RS01815 are separated by 210 nucleotides ABZR88_RS01815 and ABZR88_RS01820 are separated by 72 nucleotides ABZR88_RS01820 and ABZR88_RS01825 are separated by 214 nucleotides
ABZR88_RS01810: ABZR88_RS01810 - SDR family NAD(P)-dependent oxidoreductase, at 410,861 to 411,613
_RS01810
ABZR88_RS01815: ABZR88_RS01815 - ABC transporter ATP-binding protein, at 411,824 to 413,599
_RS01815
ABZR88_RS01820: ABZR88_RS01820 - ribosome recycling factor, at 413,672 to 414,235
_RS01820
ABZR88_RS01825: ABZR88_RS01825 - DUF5703 domain-containing protein, at 414,450 to 416,756
_RS01825
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 411.166 kb on + strand, within ABZR88_RS01810 at 411.185 kb on + strand, within ABZR88_RS01810 at 411.353 kb on + strand, within ABZR88_RS01810 at 411.367 kb on + strand, within ABZR88_RS01810 at 411.369 kb on + strand, within ABZR88_RS01810 at 412.073 kb on - strand, within ABZR88_RS01815 at 412.262 kb on - strand, within ABZR88_RS01815 at 412.333 kb on + strand, within ABZR88_RS01815 at 412.344 kb on - strand, within ABZR88_RS01815 at 412.402 kb on + strand, within ABZR88_RS01815 at 412.402 kb on + strand, within ABZR88_RS01815 at 412.402 kb on + strand, within ABZR88_RS01815 at 412.406 kb on + strand, within ABZR88_RS01815 at 412.412 kb on - strand, within ABZR88_RS01815 at 412.434 kb on - strand, within ABZR88_RS01815 at 412.601 kb on - strand, within ABZR88_RS01815 at 412.832 kb on + strand, within ABZR88_RS01815 at 412.940 kb on - strand, within ABZR88_RS01815 at 413.069 kb on - strand, within ABZR88_RS01815 at 413.440 kb on - strand at 413.586 kb on - strand at 414.286 kb on - strand at 414.303 kb on - strand at 414.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 411,166 + ABZR88_RS01810 0.41 -0.3 411,185 + ABZR88_RS01810 0.43 +0.8 411,353 + ABZR88_RS01810 0.65 +1.2 411,367 + ABZR88_RS01810 0.67 +0.4 411,369 + ABZR88_RS01810 0.67 +1.6 412,073 - ABZR88_RS01815 0.14 +0.6 412,262 - ABZR88_RS01815 0.25 +0.4 412,333 + ABZR88_RS01815 0.29 +1.8 412,344 - ABZR88_RS01815 0.29 +0.6 412,402 + ABZR88_RS01815 0.33 +1.7 412,402 + ABZR88_RS01815 0.33 +1.1 412,402 + ABZR88_RS01815 0.33 +1.2 412,406 + ABZR88_RS01815 0.33 +0.5 412,412 - ABZR88_RS01815 0.33 +2.6 412,434 - ABZR88_RS01815 0.34 +0.7 412,601 - ABZR88_RS01815 0.44 +0.6 412,832 + ABZR88_RS01815 0.57 -0.1 412,940 - ABZR88_RS01815 0.63 +0.4 413,069 - ABZR88_RS01815 0.70 +1.3 413,440 - +1.1 413,586 - +4.0 414,286 - +0.6 414,303 - -0.5 414,473 + +1.1
Or see this region's nucleotide sequence