Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00865 and ABZR88_RS00870 are separated by 152 nucleotides ABZR88_RS00870 and ABZR88_RS00875 are separated by 673 nucleotides
ABZR88_RS00865: ABZR88_RS00865 - RagB/SusD family nutrient uptake outer membrane protein, at 174,456 to 176,498
_RS00865
ABZR88_RS00870: ABZR88_RS00870 - sugar kinase, at 176,651 to 177,670
_RS00870
ABZR88_RS00875: ABZR88_RS00875 - hypothetical protein, at 178,344 to 179,066
_RS00875
Position (kb)
176
177
178 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 176.041 kb on - strand, within ABZR88_RS00865 at 176.265 kb on + strand, within ABZR88_RS00865 at 176.271 kb on + strand, within ABZR88_RS00865 at 176.273 kb on + strand, within ABZR88_RS00865 at 176.430 kb on - strand at 176.430 kb on - strand at 176.617 kb on + strand at 176.625 kb on - strand at 176.668 kb on - strand at 176.748 kb on - strand at 176.748 kb on - strand at 176.750 kb on - strand at 176.859 kb on - strand, within ABZR88_RS00870 at 177.036 kb on + strand, within ABZR88_RS00870 at 177.219 kb on - strand, within ABZR88_RS00870 at 177.416 kb on - strand, within ABZR88_RS00870 at 177.426 kb on - strand, within ABZR88_RS00870 at 177.703 kb on + strand at 177.704 kb on - strand at 177.704 kb on - strand at 177.706 kb on - strand at 177.816 kb on - strand at 177.844 kb on - strand at 177.942 kb on - strand at 177.947 kb on - strand at 178.027 kb on + strand at 178.068 kb on + strand at 178.068 kb on + strand at 178.069 kb on - strand at 178.143 kb on - strand at 178.147 kb on + strand at 178.183 kb on + strand at 178.199 kb on - strand at 178.222 kb on + strand at 178.289 kb on - strand at 178.317 kb on + strand at 178.322 kb on - strand at 178.386 kb on + strand at 178.591 kb on - strand, within ABZR88_RS00875 at 178.592 kb on + strand, within ABZR88_RS00875 at 178.660 kb on - strand, within ABZR88_RS00875
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 176,041 - ABZR88_RS00865 0.78 -0.9 176,265 + ABZR88_RS00865 0.89 -1.2 176,271 + ABZR88_RS00865 0.89 -2.1 176,273 + ABZR88_RS00865 0.89 -0.8 176,430 - -0.9 176,430 - -0.4 176,617 + -1.1 176,625 - -0.9 176,668 - -2.6 176,748 - -1.2 176,748 - -0.9 176,750 - +0.1 176,859 - ABZR88_RS00870 0.20 -0.9 177,036 + ABZR88_RS00870 0.38 +1.5 177,219 - ABZR88_RS00870 0.56 +0.2 177,416 - ABZR88_RS00870 0.75 -0.9 177,426 - ABZR88_RS00870 0.76 -0.1 177,703 + -0.1 177,704 - +0.9 177,704 - +0.9 177,706 - -0.0 177,816 - +0.7 177,844 - +0.8 177,942 - -0.9 177,947 - -0.8 178,027 + +0.3 178,068 + +0.6 178,068 + +0.8 178,069 - +1.1 178,143 - +0.1 178,147 + +0.7 178,183 + +3.3 178,199 - +1.3 178,222 + +0.6 178,289 - +1.3 178,317 + +0.1 178,322 - +0.3 178,386 + +0.3 178,591 - ABZR88_RS00875 0.34 +1.4 178,592 + ABZR88_RS00875 0.34 +0.1 178,660 - ABZR88_RS00875 0.44 +0.4
Or see this region's nucleotide sequence