Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS00870

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS00865 and ABZR88_RS00870 are separated by 152 nucleotidesABZR88_RS00870 and ABZR88_RS00875 are separated by 673 nucleotides ABZR88_RS00865: ABZR88_RS00865 - RagB/SusD family nutrient uptake outer membrane protein, at 174,456 to 176,498 _RS00865 ABZR88_RS00870: ABZR88_RS00870 - sugar kinase, at 176,651 to 177,670 _RS00870 ABZR88_RS00875: ABZR88_RS00875 - hypothetical protein, at 178,344 to 179,066 _RS00875 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2 3at 176.041 kb on - strand, within ABZR88_RS00865at 176.265 kb on + strand, within ABZR88_RS00865at 176.271 kb on + strand, within ABZR88_RS00865at 176.273 kb on + strand, within ABZR88_RS00865at 176.430 kb on - strandat 176.430 kb on - strandat 176.617 kb on + strandat 176.625 kb on - strandat 176.668 kb on - strandat 176.748 kb on - strandat 176.748 kb on - strandat 176.750 kb on - strandat 176.859 kb on - strand, within ABZR88_RS00870at 177.036 kb on + strand, within ABZR88_RS00870at 177.219 kb on - strand, within ABZR88_RS00870at 177.416 kb on - strand, within ABZR88_RS00870at 177.426 kb on - strand, within ABZR88_RS00870at 177.703 kb on + strandat 177.704 kb on - strandat 177.704 kb on - strandat 177.706 kb on - strandat 177.816 kb on - strandat 177.844 kb on - strandat 177.942 kb on - strandat 177.947 kb on - strandat 178.027 kb on + strandat 178.068 kb on + strandat 178.068 kb on + strandat 178.069 kb on - strandat 178.143 kb on - strandat 178.147 kb on + strandat 178.183 kb on + strandat 178.199 kb on - strandat 178.222 kb on + strandat 178.289 kb on - strandat 178.317 kb on + strandat 178.322 kb on - strandat 178.386 kb on + strandat 178.591 kb on - strand, within ABZR88_RS00875at 178.592 kb on + strand, within ABZR88_RS00875at 178.660 kb on - strand, within ABZR88_RS00875

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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176,041 - ABZR88_RS00865 0.78 -0.9
176,265 + ABZR88_RS00865 0.89 -1.2
176,271 + ABZR88_RS00865 0.89 -2.1
176,273 + ABZR88_RS00865 0.89 -0.8
176,430 - -0.9
176,430 - -0.4
176,617 + -1.1
176,625 - -0.9
176,668 - -2.6
176,748 - -1.2
176,748 - -0.9
176,750 - +0.1
176,859 - ABZR88_RS00870 0.20 -0.9
177,036 + ABZR88_RS00870 0.38 +1.5
177,219 - ABZR88_RS00870 0.56 +0.2
177,416 - ABZR88_RS00870 0.75 -0.9
177,426 - ABZR88_RS00870 0.76 -0.1
177,703 + -0.1
177,704 - +0.9
177,704 - +0.9
177,706 - -0.0
177,816 - +0.7
177,844 - +0.8
177,942 - -0.9
177,947 - -0.8
178,027 + +0.3
178,068 + +0.6
178,068 + +0.8
178,069 - +1.1
178,143 - +0.1
178,147 + +0.7
178,183 + +3.3
178,199 - +1.3
178,222 + +0.6
178,289 - +1.3
178,317 + +0.1
178,322 - +0.3
178,386 + +0.3
178,591 - ABZR88_RS00875 0.34 +1.4
178,592 + ABZR88_RS00875 0.34 +0.1
178,660 - ABZR88_RS00875 0.44 +0.4

Or see this region's nucleotide sequence