Experiment: D-Cellobiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13175 and ABZR88_RS13180 are separated by 98 nucleotides ABZR88_RS13180 and ABZR88_RS13185 are separated by 11 nucleotides ABZR88_RS13185 and ABZR88_RS13190 are separated by 14 nucleotides
ABZR88_RS13175: ABZR88_RS13175 - multidrug effflux MFS transporter, at 3,267,744 to 3,268,946
_RS13175
ABZR88_RS13180: ABZR88_RS13180 - DUF1080 domain-containing protein, at 3,269,045 to 3,269,824
_RS13180
ABZR88_RS13185: ABZR88_RS13185 - sugar phosphate isomerase/epimerase, at 3,269,836 to 3,270,708
_RS13185
ABZR88_RS13190: ABZR88_RS13190 - hydroxypyruvate isomerase family protein, at 3,270,723 to 3,271,610
_RS13190
Position (kb) 3269
3270 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 3268.102 kb on + strand, within ABZR88_RS13175 at 3268.105 kb on + strand, within ABZR88_RS13175 at 3268.106 kb on - strand, within ABZR88_RS13175 at 3268.172 kb on - strand, within ABZR88_RS13175 at 3268.172 kb on - strand, within ABZR88_RS13175 at 3268.391 kb on + strand, within ABZR88_RS13175 at 3268.409 kb on + strand, within ABZR88_RS13175 at 3268.409 kb on + strand, within ABZR88_RS13175 at 3268.422 kb on - strand, within ABZR88_RS13175 at 3268.425 kb on + strand, within ABZR88_RS13175 at 3268.426 kb on - strand, within ABZR88_RS13175 at 3268.630 kb on + strand, within ABZR88_RS13175 at 3268.631 kb on - strand, within ABZR88_RS13175 at 3268.718 kb on + strand, within ABZR88_RS13175 at 3268.842 kb on - strand at 3268.878 kb on - strand at 3268.966 kb on + strand at 3269.012 kb on + strand at 3269.036 kb on + strand at 3269.146 kb on - strand, within ABZR88_RS13180 at 3269.146 kb on - strand, within ABZR88_RS13180 at 3269.186 kb on + strand, within ABZR88_RS13180 at 3269.206 kb on + strand, within ABZR88_RS13180 at 3269.290 kb on - strand, within ABZR88_RS13180 at 3269.374 kb on - strand, within ABZR88_RS13180 at 3269.392 kb on + strand, within ABZR88_RS13180 at 3269.393 kb on - strand, within ABZR88_RS13180 at 3269.507 kb on - strand, within ABZR88_RS13180 at 3269.563 kb on + strand, within ABZR88_RS13180 at 3269.924 kb on + strand, within ABZR88_RS13185 at 3269.925 kb on - strand, within ABZR88_RS13185 at 3269.960 kb on - strand, within ABZR88_RS13185 at 3270.006 kb on + strand, within ABZR88_RS13185 at 3270.107 kb on + strand, within ABZR88_RS13185 at 3270.165 kb on - strand, within ABZR88_RS13185 at 3270.212 kb on + strand, within ABZR88_RS13185 at 3270.213 kb on - strand, within ABZR88_RS13185 at 3270.333 kb on - strand, within ABZR88_RS13185 at 3270.479 kb on - strand, within ABZR88_RS13185 at 3270.597 kb on - strand, within ABZR88_RS13185 at 3270.598 kb on + strand, within ABZR88_RS13185 at 3270.599 kb on - strand, within ABZR88_RS13185 at 3270.599 kb on - strand, within ABZR88_RS13185 at 3270.802 kb on + strand at 3270.803 kb on - strand at 3270.822 kb on + strand, within ABZR88_RS13190 at 3270.823 kb on - strand, within ABZR88_RS13190 at 3270.823 kb on - strand, within ABZR88_RS13190
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 6 days remove 3,268,102 + ABZR88_RS13175 0.30 -1.1 3,268,105 + ABZR88_RS13175 0.30 -0.6 3,268,106 - ABZR88_RS13175 0.30 +0.1 3,268,172 - ABZR88_RS13175 0.36 +0.0 3,268,172 - ABZR88_RS13175 0.36 +0.4 3,268,391 + ABZR88_RS13175 0.54 +0.6 3,268,409 + ABZR88_RS13175 0.55 +0.4 3,268,409 + ABZR88_RS13175 0.55 -0.5 3,268,422 - ABZR88_RS13175 0.56 +0.0 3,268,425 + ABZR88_RS13175 0.57 -1.0 3,268,426 - ABZR88_RS13175 0.57 +0.0 3,268,630 + ABZR88_RS13175 0.74 -0.4 3,268,631 - ABZR88_RS13175 0.74 -0.1 3,268,718 + ABZR88_RS13175 0.81 -0.9 3,268,842 - -0.2 3,268,878 - -0.3 3,268,966 + -1.0 3,269,012 + -0.2 3,269,036 + -3.2 3,269,146 - ABZR88_RS13180 0.13 +0.5 3,269,146 - ABZR88_RS13180 0.13 -1.6 3,269,186 + ABZR88_RS13180 0.18 -1.3 3,269,206 + ABZR88_RS13180 0.21 -1.1 3,269,290 - ABZR88_RS13180 0.31 -1.9 3,269,374 - ABZR88_RS13180 0.42 -2.1 3,269,392 + ABZR88_RS13180 0.44 -1.8 3,269,393 - ABZR88_RS13180 0.45 -1.8 3,269,507 - ABZR88_RS13180 0.59 -1.5 3,269,563 + ABZR88_RS13180 0.66 -0.8 3,269,924 + ABZR88_RS13185 0.10 -6.0 3,269,925 - ABZR88_RS13185 0.10 -6.5 3,269,960 - ABZR88_RS13185 0.14 -0.9 3,270,006 + ABZR88_RS13185 0.19 -6.8 3,270,107 + ABZR88_RS13185 0.31 -5.2 3,270,165 - ABZR88_RS13185 0.38 -1.5 3,270,212 + ABZR88_RS13185 0.43 -3.7 3,270,213 - ABZR88_RS13185 0.43 -5.2 3,270,333 - ABZR88_RS13185 0.57 -2.6 3,270,479 - ABZR88_RS13185 0.74 -1.1 3,270,597 - ABZR88_RS13185 0.87 -4.3 3,270,598 + ABZR88_RS13185 0.87 -2.3 3,270,599 - ABZR88_RS13185 0.87 -5.4 3,270,599 - ABZR88_RS13185 0.87 -2.6 3,270,802 + -2.6 3,270,803 - +2.8 3,270,822 + ABZR88_RS13190 0.11 -0.9 3,270,823 - ABZR88_RS13190 0.11 +3.0 3,270,823 - ABZR88_RS13190 0.11 +2.7
Or see this region's nucleotide sequence