Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17330 and ABZR88_RS17335 are separated by 1 nucleotides ABZR88_RS17335 and ABZR88_RS17340 are separated by 1 nucleotides ABZR88_RS17340 and ABZR88_RS17345 overlap by 8 nucleotides
ABZR88_RS17330: ABZR88_RS17330 - ABC transporter ATP-binding protein, at 4,240,314 to 4,242,143
_RS17330
ABZR88_RS17335: ABZR88_RS17335 - glycosyltransferase family 2 protein, at 4,242,145 to 4,243,080
_RS17335
ABZR88_RS17340: ABZR88_RS17340 - glycosyltransferase, at 4,243,082 to 4,243,837
_RS17340
ABZR88_RS17345: ABZR88_RS17345 - glycosyltransferase family 1 protein, at 4,243,830 to 4,244,933
_RS17345
Position (kb) 4242
4243
4244 Strain fitness (log2 ratio) -1
0
1
2 at 4242.142 kb on - strand at 4242.287 kb on - strand, within ABZR88_RS17335 at 4242.361 kb on + strand, within ABZR88_RS17335 at 4242.406 kb on + strand, within ABZR88_RS17335 at 4242.642 kb on - strand, within ABZR88_RS17335 at 4242.763 kb on - strand, within ABZR88_RS17335 at 4242.897 kb on + strand, within ABZR88_RS17335 at 4243.152 kb on - strand at 4243.172 kb on + strand, within ABZR88_RS17340 at 4243.448 kb on + strand, within ABZR88_RS17340 at 4243.875 kb on + strand at 4243.971 kb on + strand, within ABZR88_RS17345
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 4,242,142 - +1.6 4,242,287 - ABZR88_RS17335 0.15 -0.2 4,242,361 + ABZR88_RS17335 0.23 +0.7 4,242,406 + ABZR88_RS17335 0.28 -0.9 4,242,642 - ABZR88_RS17335 0.53 +0.4 4,242,763 - ABZR88_RS17335 0.66 -0.5 4,242,897 + ABZR88_RS17335 0.80 +0.7 4,243,152 - +0.9 4,243,172 + ABZR88_RS17340 0.12 +1.2 4,243,448 + ABZR88_RS17340 0.48 +1.9 4,243,875 + +0.5 4,243,971 + ABZR88_RS17345 0.13 +0.8
Or see this region's nucleotide sequence