Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09210 and ABZR88_RS09215 are separated by 12 nucleotides ABZR88_RS09215 and ABZR88_RS09220 are separated by 2 nucleotides ABZR88_RS09220 and ABZR88_RS09225 are separated by 150 nucleotides
ABZR88_RS09210: ABZR88_RS09210 - DEAD/DEAH box helicase, at 2,312,983 to 2,314,329
_RS09210
ABZR88_RS09215: ABZR88_RS09215 - hypothetical protein, at 2,314,342 to 2,314,617
_RS09215
ABZR88_RS09220: ABZR88_RS09220 - gliding motility protein GldC, at 2,314,620 to 2,314,949
_RS09220
ABZR88_RS09225: ABZR88_RS09225 - MFS transporter, at 2,315,100 to 2,316,305
_RS09225
Position (kb)
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1 at 2314.402 kb on + strand, within ABZR88_RS09215 at 2314.594 kb on - strand at 2314.596 kb on - strand at 2314.648 kb on + strand at 2314.649 kb on - strand at 2314.694 kb on + strand, within ABZR88_RS09220 at 2314.856 kb on + strand, within ABZR88_RS09220 at 2314.939 kb on + strand at 2315.022 kb on - strand at 2315.051 kb on - strand at 2315.184 kb on - strand at 2315.189 kb on - strand at 2315.338 kb on - strand, within ABZR88_RS09225 at 2315.448 kb on - strand, within ABZR88_RS09225 at 2315.448 kb on - strand, within ABZR88_RS09225 at 2315.448 kb on - strand, within ABZR88_RS09225 at 2315.450 kb on - strand, within ABZR88_RS09225 at 2315.589 kb on + strand, within ABZR88_RS09225 at 2315.646 kb on + strand, within ABZR88_RS09225 at 2315.761 kb on - strand, within ABZR88_RS09225 at 2315.916 kb on - strand, within ABZR88_RS09225
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 2,314,402 + ABZR88_RS09215 0.22 +0.1 2,314,594 - -0.6 2,314,596 - -0.6 2,314,648 + +0.5 2,314,649 - -2.4 2,314,694 + ABZR88_RS09220 0.22 -1.8 2,314,856 + ABZR88_RS09220 0.72 -1.3 2,314,939 + -0.0 2,315,022 - +0.2 2,315,051 - -0.3 2,315,184 - -0.4 2,315,189 - +0.5 2,315,338 - ABZR88_RS09225 0.20 -1.1 2,315,448 - ABZR88_RS09225 0.29 +0.0 2,315,448 - ABZR88_RS09225 0.29 -0.6 2,315,448 - ABZR88_RS09225 0.29 -0.4 2,315,450 - ABZR88_RS09225 0.29 -0.5 2,315,589 + ABZR88_RS09225 0.41 +0.2 2,315,646 + ABZR88_RS09225 0.45 -1.4 2,315,761 - ABZR88_RS09225 0.55 -0.6 2,315,916 - ABZR88_RS09225 0.68 -0.6
Or see this region's nucleotide sequence