Experiment: D-Cellobiose (C); 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS18030 and ABZR88_RS18035 overlap by 4 nucleotides ABZR88_RS18035 and ABZR88_RS18040 are separated by 108 nucleotides ABZR88_RS18040 and ABZR88_RS18045 are separated by 281 nucleotides
ABZR88_RS18030: ABZR88_RS18030 - lipoyl(octanoyl) transferase LipB, at 4,400,852 to 4,401,580
_RS18030
ABZR88_RS18035: ABZR88_RS18035 - SGNH/GDSL hydrolase family protein, at 4,401,577 to 4,402,314
_RS18035
ABZR88_RS18040: ABZR88_RS18040 - aspartate aminotransferase family protein, at 4,402,423 to 4,403,613
_RS18040
ABZR88_RS18045: ABZR88_RS18045 - glycosyltransferase family 4 protein, at 4,403,895 to 4,406,171
_RS18045
Position (kb)
4402
4403
4404 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4401.791 kb on + strand, within ABZR88_RS18035 at 4401.792 kb on - strand, within ABZR88_RS18035 at 4401.792 kb on - strand, within ABZR88_RS18035 at 4401.873 kb on + strand, within ABZR88_RS18035 at 4401.874 kb on - strand, within ABZR88_RS18035 at 4401.973 kb on + strand, within ABZR88_RS18035 at 4401.974 kb on - strand, within ABZR88_RS18035 at 4401.976 kb on - strand, within ABZR88_RS18035 at 4401.976 kb on - strand, within ABZR88_RS18035 at 4402.047 kb on + strand, within ABZR88_RS18035 at 4402.078 kb on + strand, within ABZR88_RS18035 at 4402.105 kb on - strand, within ABZR88_RS18035 at 4402.172 kb on - strand, within ABZR88_RS18035 at 4402.172 kb on - strand, within ABZR88_RS18035 at 4402.183 kb on - strand, within ABZR88_RS18035 at 4402.258 kb on + strand at 4402.411 kb on + strand at 4402.455 kb on + strand at 4402.514 kb on - strand at 4402.519 kb on + strand at 4402.519 kb on + strand at 4402.520 kb on - strand at 4402.520 kb on - strand at 4402.569 kb on - strand, within ABZR88_RS18040 at 4402.630 kb on + strand, within ABZR88_RS18040 at 4402.800 kb on + strand, within ABZR88_RS18040 at 4402.826 kb on - strand, within ABZR88_RS18040 at 4403.019 kb on - strand, within ABZR88_RS18040 at 4403.708 kb on + strand at 4403.708 kb on + strand at 4403.708 kb on + strand at 4403.737 kb on + strand at 4403.771 kb on + strand at 4403.839 kb on + strand at 4403.840 kb on - strand at 4403.840 kb on - strand at 4403.847 kb on - strand at 4403.855 kb on - strand at 4403.886 kb on + strand at 4403.886 kb on + strand at 4403.891 kb on - strand at 4403.909 kb on + strand at 4403.910 kb on - strand at 4404.205 kb on - strand, within ABZR88_RS18045 at 4404.209 kb on - strand, within ABZR88_RS18045 at 4404.234 kb on - strand, within ABZR88_RS18045 at 4404.234 kb on - strand, within ABZR88_RS18045 at 4404.372 kb on + strand, within ABZR88_RS18045 at 4404.468 kb on - strand, within ABZR88_RS18045 at 4404.488 kb on + strand, within ABZR88_RS18045 at 4404.499 kb on + strand, within ABZR88_RS18045 at 4404.576 kb on + strand, within ABZR88_RS18045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days remove 4,401,791 + ABZR88_RS18035 0.29 +0.5 4,401,792 - ABZR88_RS18035 0.29 -1.6 4,401,792 - ABZR88_RS18035 0.29 +0.2 4,401,873 + ABZR88_RS18035 0.40 -0.3 4,401,874 - ABZR88_RS18035 0.40 -0.2 4,401,973 + ABZR88_RS18035 0.54 +0.3 4,401,974 - ABZR88_RS18035 0.54 -0.7 4,401,976 - ABZR88_RS18035 0.54 -0.5 4,401,976 - ABZR88_RS18035 0.54 -0.8 4,402,047 + ABZR88_RS18035 0.64 -0.2 4,402,078 + ABZR88_RS18035 0.68 -0.8 4,402,105 - ABZR88_RS18035 0.72 -0.2 4,402,172 - ABZR88_RS18035 0.81 -1.4 4,402,172 - ABZR88_RS18035 0.81 -0.5 4,402,183 - ABZR88_RS18035 0.82 +0.0 4,402,258 + +0.1 4,402,411 + -0.0 4,402,455 + +0.3 4,402,514 - +0.8 4,402,519 + +0.2 4,402,519 + +0.5 4,402,520 - +0.7 4,402,520 - +0.3 4,402,569 - ABZR88_RS18040 0.12 +1.7 4,402,630 + ABZR88_RS18040 0.17 -0.2 4,402,800 + ABZR88_RS18040 0.32 +0.6 4,402,826 - ABZR88_RS18040 0.34 +1.6 4,403,019 - ABZR88_RS18040 0.50 +1.0 4,403,708 + -0.1 4,403,708 + +0.6 4,403,708 + +0.3 4,403,737 + +0.6 4,403,771 + +0.3 4,403,839 + -1.8 4,403,840 - +1.1 4,403,840 - -3.2 4,403,847 - -1.5 4,403,855 - -2.1 4,403,886 + -0.4 4,403,886 + -0.2 4,403,891 - -1.3 4,403,909 + -2.4 4,403,910 - -1.5 4,404,205 - ABZR88_RS18045 0.14 -1.4 4,404,209 - ABZR88_RS18045 0.14 -3.0 4,404,234 - ABZR88_RS18045 0.15 -2.1 4,404,234 - ABZR88_RS18045 0.15 -2.7 4,404,372 + ABZR88_RS18045 0.21 -3.7 4,404,468 - ABZR88_RS18045 0.25 -2.5 4,404,488 + ABZR88_RS18045 0.26 -2.1 4,404,499 + ABZR88_RS18045 0.27 -1.7 4,404,576 + ABZR88_RS18045 0.30 -1.9
Or see this region's nucleotide sequence