Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS18040

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS18030 and ABZR88_RS18035 overlap by 4 nucleotidesABZR88_RS18035 and ABZR88_RS18040 are separated by 108 nucleotidesABZR88_RS18040 and ABZR88_RS18045 are separated by 281 nucleotides ABZR88_RS18030: ABZR88_RS18030 - lipoyl(octanoyl) transferase LipB, at 4,400,852 to 4,401,580 _RS18030 ABZR88_RS18035: ABZR88_RS18035 - SGNH/GDSL hydrolase family protein, at 4,401,577 to 4,402,314 _RS18035 ABZR88_RS18040: ABZR88_RS18040 - aspartate aminotransferase family protein, at 4,402,423 to 4,403,613 _RS18040 ABZR88_RS18045: ABZR88_RS18045 - glycosyltransferase family 4 protein, at 4,403,895 to 4,406,171 _RS18045 Position (kb) 4402 4403 4404Strain fitness (log2 ratio) -3 -2 -1 0 1at 4401.791 kb on + strand, within ABZR88_RS18035at 4401.792 kb on - strand, within ABZR88_RS18035at 4401.792 kb on - strand, within ABZR88_RS18035at 4401.873 kb on + strand, within ABZR88_RS18035at 4401.874 kb on - strand, within ABZR88_RS18035at 4401.973 kb on + strand, within ABZR88_RS18035at 4401.974 kb on - strand, within ABZR88_RS18035at 4401.976 kb on - strand, within ABZR88_RS18035at 4401.976 kb on - strand, within ABZR88_RS18035at 4402.047 kb on + strand, within ABZR88_RS18035at 4402.078 kb on + strand, within ABZR88_RS18035at 4402.105 kb on - strand, within ABZR88_RS18035at 4402.172 kb on - strand, within ABZR88_RS18035at 4402.172 kb on - strand, within ABZR88_RS18035at 4402.183 kb on - strand, within ABZR88_RS18035at 4402.258 kb on + strandat 4402.411 kb on + strandat 4402.455 kb on + strandat 4402.514 kb on - strandat 4402.519 kb on + strandat 4402.519 kb on + strandat 4402.520 kb on - strandat 4402.520 kb on - strandat 4402.569 kb on - strand, within ABZR88_RS18040at 4402.630 kb on + strand, within ABZR88_RS18040at 4402.800 kb on + strand, within ABZR88_RS18040at 4402.826 kb on - strand, within ABZR88_RS18040at 4403.019 kb on - strand, within ABZR88_RS18040at 4403.708 kb on + strandat 4403.708 kb on + strandat 4403.708 kb on + strandat 4403.737 kb on + strandat 4403.771 kb on + strandat 4403.839 kb on + strandat 4403.840 kb on - strandat 4403.840 kb on - strandat 4403.847 kb on - strandat 4403.855 kb on - strandat 4403.886 kb on + strandat 4403.886 kb on + strandat 4403.891 kb on - strandat 4403.909 kb on + strandat 4403.910 kb on - strandat 4404.205 kb on - strand, within ABZR88_RS18045at 4404.209 kb on - strand, within ABZR88_RS18045at 4404.234 kb on - strand, within ABZR88_RS18045at 4404.234 kb on - strand, within ABZR88_RS18045at 4404.372 kb on + strand, within ABZR88_RS18045at 4404.468 kb on - strand, within ABZR88_RS18045at 4404.488 kb on + strand, within ABZR88_RS18045at 4404.499 kb on + strand, within ABZR88_RS18045at 4404.576 kb on + strand, within ABZR88_RS18045

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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4,401,791 + ABZR88_RS18035 0.29 +0.5
4,401,792 - ABZR88_RS18035 0.29 -1.6
4,401,792 - ABZR88_RS18035 0.29 +0.2
4,401,873 + ABZR88_RS18035 0.40 -0.3
4,401,874 - ABZR88_RS18035 0.40 -0.2
4,401,973 + ABZR88_RS18035 0.54 +0.3
4,401,974 - ABZR88_RS18035 0.54 -0.7
4,401,976 - ABZR88_RS18035 0.54 -0.5
4,401,976 - ABZR88_RS18035 0.54 -0.8
4,402,047 + ABZR88_RS18035 0.64 -0.2
4,402,078 + ABZR88_RS18035 0.68 -0.8
4,402,105 - ABZR88_RS18035 0.72 -0.2
4,402,172 - ABZR88_RS18035 0.81 -1.4
4,402,172 - ABZR88_RS18035 0.81 -0.5
4,402,183 - ABZR88_RS18035 0.82 +0.0
4,402,258 + +0.1
4,402,411 + -0.0
4,402,455 + +0.3
4,402,514 - +0.8
4,402,519 + +0.2
4,402,519 + +0.5
4,402,520 - +0.7
4,402,520 - +0.3
4,402,569 - ABZR88_RS18040 0.12 +1.7
4,402,630 + ABZR88_RS18040 0.17 -0.2
4,402,800 + ABZR88_RS18040 0.32 +0.6
4,402,826 - ABZR88_RS18040 0.34 +1.6
4,403,019 - ABZR88_RS18040 0.50 +1.0
4,403,708 + -0.1
4,403,708 + +0.6
4,403,708 + +0.3
4,403,737 + +0.6
4,403,771 + +0.3
4,403,839 + -1.8
4,403,840 - +1.1
4,403,840 - -3.2
4,403,847 - -1.5
4,403,855 - -2.1
4,403,886 + -0.4
4,403,886 + -0.2
4,403,891 - -1.3
4,403,909 + -2.4
4,403,910 - -1.5
4,404,205 - ABZR88_RS18045 0.14 -1.4
4,404,209 - ABZR88_RS18045 0.14 -3.0
4,404,234 - ABZR88_RS18045 0.15 -2.1
4,404,234 - ABZR88_RS18045 0.15 -2.7
4,404,372 + ABZR88_RS18045 0.21 -3.7
4,404,468 - ABZR88_RS18045 0.25 -2.5
4,404,488 + ABZR88_RS18045 0.26 -2.1
4,404,499 + ABZR88_RS18045 0.27 -1.7
4,404,576 + ABZR88_RS18045 0.30 -1.9

Or see this region's nucleotide sequence