Experiment: 7H9 with Spectinomycin 0.029 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0236c and Rv0236A are separated by 46 nucleotides Rv0236A and Rv0237 are separated by 114 nucleotides Rv0237 and Rv0238 are separated by 75 nucleotides Rv0238 and Rv0239 are separated by 61 nucleotides Rv0239 and Rv0240 are separated by 7 nucleotides
Rv0236c: Rv0236c - Possible arabinofuranosyltransferase AftD, at 282,649 to 286,851
Rv0236c
Rv0236A: Rv0236A - Small secreted protein, at 286,898 to 287,071
Rv0236A
Rv0237: Rv0237 - Probable conserved lipoprotein LpqI, at 287,186 to 288,352
Rv0237
Rv0238: Rv0238 - Possible transcriptional regulatory protein (probably TetR-family), at 288,428 to 289,042
Rv0238
Rv0239: Rv0239 - Possible antitoxin VapB24, at 289,104 to 289,337
Rv0239
Rv0240: Rv0240 - Possible toxin VapC24. Contains PIN domain., at 289,345 to 289,782
Rv0240
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 287.159 kb on + strand at 287.160 kb on - strand at 287.211 kb on + strand at 287.212 kb on - strand at 287.441 kb on + strand, within Rv0237 at 287.441 kb on + strand, within Rv0237 at 287.442 kb on - strand, within Rv0237 at 287.811 kb on - strand, within Rv0237 at 287.811 kb on - strand, within Rv0237 at 288.131 kb on - strand, within Rv0237 at 288.131 kb on - strand, within Rv0237 at 288.385 kb on - strand at 288.390 kb on + strand at 288.394 kb on + strand at 288.394 kb on + strand at 289.075 kb on + strand at 289.227 kb on + strand, within Rv0239
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Spectinomycin 0.029 mM remove 287,159 + -0.1 287,160 - -0.9 287,211 + +0.3 287,212 - -0.3 287,441 + Rv0237 0.22 -1.3 287,441 + Rv0237 0.22 -2.4 287,442 - Rv0237 0.22 -1.8 287,811 - Rv0237 0.54 +0.1 287,811 - Rv0237 0.54 -0.3 288,131 - Rv0237 0.81 -1.0 288,131 - Rv0237 0.81 -1.3 288,385 - +0.2 288,390 + +3.2 288,394 + -1.0 288,394 + +0.8 289,075 + -0.7 289,227 + Rv0239 0.53 -0.7
Or see this region's nucleotide sequence