Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07815 and HMPREF1058_RS07810 are separated by 417 nucleotides HMPREF1058_RS07810 and HMPREF1058_RS07805 are separated by 78 nucleotides HMPREF1058_RS07805 and HMPREF1058_RS07800 are separated by 102 nucleotides HMPREF1058_RS07800 and HMPREF1058_RS07795 are separated by 218 nucleotides
HMPREF1058_RS07815: HMPREF1058_RS07815 - 6-bladed beta-propeller, at 124,777 to 125,799
_RS07815
HMPREF1058_RS07810: HMPREF1058_RS07810 - NVEALA domain-containing protein, at 126,217 to 126,450
_RS07810
HMPREF1058_RS07805: HMPREF1058_RS07805 - hypothetical protein, at 126,529 to 127,560
_RS07805
HMPREF1058_RS07800: HMPREF1058_RS07800 - hypothetical protein, at 127,663 to 127,902
_RS07800
HMPREF1058_RS07795: HMPREF1058_RS07795 - 6-bladed beta-propeller, at 128,121 to 129,128
_RS07795
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 125.530 kb on - strand, within HMPREF1058_RS07815 at 125.549 kb on + strand, within HMPREF1058_RS07815 at 125.554 kb on - strand, within HMPREF1058_RS07815 at 125.567 kb on - strand, within HMPREF1058_RS07815 at 125.587 kb on + strand, within HMPREF1058_RS07815 at 125.597 kb on - strand, within HMPREF1058_RS07815 at 125.644 kb on + strand, within HMPREF1058_RS07815 at 125.682 kb on + strand, within HMPREF1058_RS07815 at 125.709 kb on - strand at 125.713 kb on - strand at 125.727 kb on + strand at 125.772 kb on + strand at 125.776 kb on - strand at 125.779 kb on - strand at 125.780 kb on + strand at 125.914 kb on - strand at 125.942 kb on + strand at 125.948 kb on - strand at 125.989 kb on + strand at 125.990 kb on - strand at 125.990 kb on - strand at 126.024 kb on + strand at 126.111 kb on + strand at 126.244 kb on - strand, within HMPREF1058_RS07810 at 126.283 kb on + strand, within HMPREF1058_RS07810 at 126.284 kb on - strand, within HMPREF1058_RS07810 at 126.284 kb on - strand, within HMPREF1058_RS07810 at 126.284 kb on - strand at 126.305 kb on + strand, within HMPREF1058_RS07810 at 126.384 kb on - strand, within HMPREF1058_RS07810 at 126.388 kb on - strand, within HMPREF1058_RS07810 at 126.388 kb on - strand, within HMPREF1058_RS07810 at 126.388 kb on - strand, within HMPREF1058_RS07810 at 126.457 kb on - strand at 126.475 kb on + strand at 126.475 kb on + strand at 126.476 kb on - strand at 126.502 kb on - strand at 126.527 kb on + strand at 126.527 kb on + strand at 126.528 kb on - strand at 126.528 kb on - strand at 126.569 kb on + strand at 126.570 kb on - strand at 126.570 kb on - strand at 126.598 kb on - strand at 126.641 kb on + strand, within HMPREF1058_RS07805 at 126.641 kb on + strand, within HMPREF1058_RS07805 at 126.642 kb on + strand, within HMPREF1058_RS07805 at 126.642 kb on - strand, within HMPREF1058_RS07805 at 126.673 kb on - strand, within HMPREF1058_RS07805 at 126.684 kb on - strand, within HMPREF1058_RS07805 at 126.723 kb on - strand, within HMPREF1058_RS07805 at 126.791 kb on + strand, within HMPREF1058_RS07805 at 126.792 kb on - strand, within HMPREF1058_RS07805 at 126.792 kb on - strand, within HMPREF1058_RS07805 at 126.878 kb on - strand, within HMPREF1058_RS07805 at 126.946 kb on + strand, within HMPREF1058_RS07805 at 126.964 kb on + strand, within HMPREF1058_RS07805 at 127.004 kb on - strand, within HMPREF1058_RS07805 at 127.004 kb on - strand, within HMPREF1058_RS07805 at 127.005 kb on + strand, within HMPREF1058_RS07805 at 127.035 kb on + strand, within HMPREF1058_RS07805 at 127.086 kb on + strand, within HMPREF1058_RS07805 at 127.117 kb on + strand, within HMPREF1058_RS07805 at 127.118 kb on - strand, within HMPREF1058_RS07805 at 127.118 kb on - strand, within HMPREF1058_RS07805 at 127.120 kb on - strand, within HMPREF1058_RS07805 at 127.172 kb on - strand, within HMPREF1058_RS07805 at 127.180 kb on + strand, within HMPREF1058_RS07805 at 127.198 kb on + strand, within HMPREF1058_RS07805 at 127.199 kb on - strand, within HMPREF1058_RS07805 at 127.294 kb on + strand, within HMPREF1058_RS07805 at 127.294 kb on + strand, within HMPREF1058_RS07805 at 127.311 kb on + strand, within HMPREF1058_RS07805 at 127.315 kb on + strand, within HMPREF1058_RS07805 at 127.323 kb on + strand, within HMPREF1058_RS07805 at 127.422 kb on - strand, within HMPREF1058_RS07805 at 127.422 kb on - strand, within HMPREF1058_RS07805 at 127.554 kb on + strand at 127.713 kb on - strand, within HMPREF1058_RS07800 at 127.722 kb on + strand, within HMPREF1058_RS07800 at 127.723 kb on - strand, within HMPREF1058_RS07800 at 127.782 kb on - strand, within HMPREF1058_RS07800 at 127.782 kb on - strand, within HMPREF1058_RS07800 at 127.782 kb on - strand, within HMPREF1058_RS07800 at 127.851 kb on + strand, within HMPREF1058_RS07800 at 127.851 kb on + strand, within HMPREF1058_RS07800 at 127.851 kb on + strand, within HMPREF1058_RS07800 at 127.852 kb on - strand, within HMPREF1058_RS07800 at 127.884 kb on + strand at 127.884 kb on + strand at 127.900 kb on + strand at 127.917 kb on + strand at 127.918 kb on - strand at 127.921 kb on + strand at 127.922 kb on - strand at 127.941 kb on + strand at 127.942 kb on - strand at 127.943 kb on + strand at 127.944 kb on - strand at 127.944 kb on - strand at 127.973 kb on - strand at 127.979 kb on - strand at 128.041 kb on - strand at 128.046 kb on + strand at 128.046 kb on + strand at 128.047 kb on - strand at 128.066 kb on + strand at 128.091 kb on + strand at 128.091 kb on + strand at 128.113 kb on + strand at 128.114 kb on - strand at 128.116 kb on - strand at 128.118 kb on - strand at 128.118 kb on - strand at 128.147 kb on - strand at 128.203 kb on - strand at 128.204 kb on + strand at 128.221 kb on + strand at 128.228 kb on + strand, within HMPREF1058_RS07795 at 128.263 kb on + strand, within HMPREF1058_RS07795 at 128.264 kb on - strand, within HMPREF1058_RS07795 at 128.264 kb on - strand, within HMPREF1058_RS07795 at 128.264 kb on - strand, within HMPREF1058_RS07795 at 128.264 kb on - strand, within HMPREF1058_RS07795 at 128.269 kb on + strand, within HMPREF1058_RS07795 at 128.297 kb on + strand, within HMPREF1058_RS07795 at 128.309 kb on - strand, within HMPREF1058_RS07795 at 128.358 kb on - strand, within HMPREF1058_RS07795 at 128.370 kb on - strand, within HMPREF1058_RS07795 at 128.373 kb on + strand, within HMPREF1058_RS07795 at 128.374 kb on - strand, within HMPREF1058_RS07795 at 128.468 kb on - strand, within HMPREF1058_RS07795 at 128.510 kb on + strand, within HMPREF1058_RS07795 at 128.537 kb on - strand, within HMPREF1058_RS07795 at 128.554 kb on + strand, within HMPREF1058_RS07795 at 128.558 kb on + strand, within HMPREF1058_RS07795 at 128.559 kb on - strand, within HMPREF1058_RS07795 at 128.560 kb on + strand, within HMPREF1058_RS07795
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 remove 125,530 - HMPREF1058_RS07815 0.74 -1.5 125,549 + HMPREF1058_RS07815 0.75 -2.8 125,554 - HMPREF1058_RS07815 0.76 -2.7 125,567 - HMPREF1058_RS07815 0.77 -1.9 125,587 + HMPREF1058_RS07815 0.79 -2.3 125,597 - HMPREF1058_RS07815 0.80 -1.5 125,644 + HMPREF1058_RS07815 0.85 +1.8 125,682 + HMPREF1058_RS07815 0.88 -1.9 125,709 - -0.6 125,713 - -1.9 125,727 + -0.2 125,772 + -2.3 125,776 - -3.4 125,779 - -4.3 125,780 + +0.1 125,914 - -1.2 125,942 + -0.6 125,948 - -0.1 125,989 + +0.9 125,990 - +2.6 125,990 - -1.3 126,024 + -0.9 126,111 + -0.9 126,244 - HMPREF1058_RS07810 0.12 -2.2 126,283 + HMPREF1058_RS07810 0.28 +2.4 126,284 - HMPREF1058_RS07810 0.29 -0.8 126,284 - HMPREF1058_RS07810 0.29 -2.0 126,284 - +0.1 126,305 + HMPREF1058_RS07810 0.38 +1.6 126,384 - HMPREF1058_RS07810 0.71 +3.6 126,388 - HMPREF1058_RS07810 0.73 -4.3 126,388 - HMPREF1058_RS07810 0.73 -1.2 126,388 - HMPREF1058_RS07810 0.73 -1.1 126,457 - -3.5 126,475 + -3.3 126,475 + +1.7 126,476 - -3.0 126,502 - +0.7 126,527 + +0.2 126,527 + -0.6 126,528 - -2.7 126,528 - -1.8 126,569 + -2.1 126,570 - -3.5 126,570 - -2.5 126,598 - -3.8 126,641 + HMPREF1058_RS07805 0.11 -1.9 126,641 + HMPREF1058_RS07805 0.11 +0.4 126,642 + HMPREF1058_RS07805 0.11 -1.5 126,642 - HMPREF1058_RS07805 0.11 -2.5 126,673 - HMPREF1058_RS07805 0.14 +0.1 126,684 - HMPREF1058_RS07805 0.15 -2.5 126,723 - HMPREF1058_RS07805 0.19 +0.1 126,791 + HMPREF1058_RS07805 0.25 +5.5 126,792 - HMPREF1058_RS07805 0.25 -4.2 126,792 - HMPREF1058_RS07805 0.25 -3.2 126,878 - HMPREF1058_RS07805 0.34 -2.5 126,946 + HMPREF1058_RS07805 0.40 +2.4 126,964 + HMPREF1058_RS07805 0.42 -0.9 127,004 - HMPREF1058_RS07805 0.46 -0.5 127,004 - HMPREF1058_RS07805 0.46 -3.3 127,005 + HMPREF1058_RS07805 0.46 -1.3 127,035 + HMPREF1058_RS07805 0.49 -0.6 127,086 + HMPREF1058_RS07805 0.54 -0.9 127,117 + HMPREF1058_RS07805 0.57 -0.3 127,118 - HMPREF1058_RS07805 0.57 -1.5 127,118 - HMPREF1058_RS07805 0.57 +0.6 127,120 - HMPREF1058_RS07805 0.57 -1.9 127,172 - HMPREF1058_RS07805 0.62 -2.1 127,180 + HMPREF1058_RS07805 0.63 +0.1 127,198 + HMPREF1058_RS07805 0.65 +0.1 127,199 - HMPREF1058_RS07805 0.65 +0.0 127,294 + HMPREF1058_RS07805 0.74 +0.7 127,294 + HMPREF1058_RS07805 0.74 -1.5 127,311 + HMPREF1058_RS07805 0.76 +2.6 127,315 + HMPREF1058_RS07805 0.76 +1.1 127,323 + HMPREF1058_RS07805 0.77 +0.3 127,422 - HMPREF1058_RS07805 0.87 -1.4 127,422 - HMPREF1058_RS07805 0.87 -2.9 127,554 + -1.5 127,713 - HMPREF1058_RS07800 0.21 +0.1 127,722 + HMPREF1058_RS07800 0.25 +0.8 127,723 - HMPREF1058_RS07800 0.25 -2.2 127,782 - HMPREF1058_RS07800 0.50 -0.9 127,782 - HMPREF1058_RS07800 0.50 -1.7 127,782 - HMPREF1058_RS07800 0.50 +0.1 127,851 + HMPREF1058_RS07800 0.78 -2.8 127,851 + HMPREF1058_RS07800 0.78 +1.7 127,851 + HMPREF1058_RS07800 0.78 +0.0 127,852 - HMPREF1058_RS07800 0.79 -2.7 127,884 + -1.9 127,884 + -0.6 127,900 + +0.1 127,917 + +0.8 127,918 - -2.1 127,921 + -2.7 127,922 - -3.5 127,941 + +1.8 127,942 - +0.1 127,943 + -0.5 127,944 - +0.7 127,944 - +0.1 127,973 - -0.9 127,979 - -1.5 128,041 - -2.9 128,046 + +0.5 128,046 + -1.5 128,047 - -0.9 128,066 + +4.3 128,091 + +1.9 128,091 + -3.5 128,113 + -2.2 128,114 - -3.8 128,116 - -3.6 128,118 - +2.1 128,118 - -1.4 128,147 - -2.4 128,203 - -0.5 128,204 + +2.4 128,221 + -1.5 128,228 + HMPREF1058_RS07795 0.11 -1.3 128,263 + HMPREF1058_RS07795 0.14 +1.0 128,264 - HMPREF1058_RS07795 0.14 -3.4 128,264 - HMPREF1058_RS07795 0.14 -1.5 128,264 - HMPREF1058_RS07795 0.14 -1.5 128,264 - HMPREF1058_RS07795 0.14 -3.1 128,269 + HMPREF1058_RS07795 0.15 -0.2 128,297 + HMPREF1058_RS07795 0.17 -1.5 128,309 - HMPREF1058_RS07795 0.19 -2.2 128,358 - HMPREF1058_RS07795 0.24 -1.3 128,370 - HMPREF1058_RS07795 0.25 -2.2 128,373 + HMPREF1058_RS07795 0.25 -2.0 128,374 - HMPREF1058_RS07795 0.25 -0.9 128,468 - HMPREF1058_RS07795 0.34 -0.8 128,510 + HMPREF1058_RS07795 0.39 +0.3 128,537 - HMPREF1058_RS07795 0.41 -1.4 128,554 + HMPREF1058_RS07795 0.43 -2.7 128,558 + HMPREF1058_RS07795 0.43 +0.8 128,559 - HMPREF1058_RS07795 0.43 -3.4 128,560 + HMPREF1058_RS07795 0.44 -1.7
Or see this region's nucleotide sequence