Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3252c

Experiment: 7H9 with Pyrazinamide 50 ug/mL; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Pyrazinamide 50 ug/mL; pH 5.5
3,629,795	-				+1.4
3,629,795	-				-1.3
3,629,922	+		Rv3249c	0.27	-1.5
3,630,142	+		Rv3249c	0.61	-0.9
3,630,369	+				-0.9
3,630,370	-				+0.5
3,630,370	-				-0.5
3,630,557	-				-0.5
3,630,568	+				-0.7
3,630,569	-				-0.4
3,630,569	-				+0.8
3,630,569	-				+0.8
3,630,572	+				-0.6
3,630,572	+				-1.1
3,630,573	-				+0.4
3,630,573	-				+0.6
3,630,580	+				+0.8
3,630,580	+				+1.1
3,630,580	+				+0.6
3,630,580	+				+0.2
3,630,581	-				+0.9
3,630,581	-				+0.1
3,630,581	-				-0.5
3,630,707	+		Rv3251c	0.81	+1.2
3,630,708	-		Rv3251c	0.82	-0.2
3,630,818	-				-0.5
3,630,843	+				-0.6
3,630,844	-				-1.9
3,630,844	-				-0.2
3,630,844	-				-0.5
3,630,893	-		Rv3252c	0.12	+1.0
3,630,988	+		Rv3252c	0.20	+0.6
3,631,051	+		Rv3252c	0.25	-0.2
3,631,078	-		Rv3252c	0.27	+0.6
3,631,088	-		Rv3252c	0.28	-0.3
3,631,099	+		Rv3252c	0.29	+2.1
3,631,099	+		Rv3252c	0.29	-0.7
3,631,099	+		Rv3252c	0.29	-0.1
3,631,100	-		Rv3252c	0.29	-0.0
3,631,113	+		Rv3252c	0.30	-0.3
3,631,241	-		Rv3252c	0.40	-0.2
3,631,426	+		Rv3252c	0.55	-0.3
3,631,426	+		Rv3252c	0.55	-1.3
3,631,426	+		Rv3252c	0.55	+0.1
3,631,426	+		Rv3252c	0.55	+0.4
3,631,427	-		Rv3252c	0.55	+0.9
3,631,427	-		Rv3252c	0.55	+2.0
3,631,427	-		Rv3252c	0.55	+0.8
3,631,427	-		Rv3252c	0.55	-2.4
3,631,438	+		Rv3252c	0.56	-0.8
3,631,627	+		Rv3252c	0.71	+1.4
3,631,628	-		Rv3252c	0.71	+0.5
3,631,666	+		Rv3252c	0.74	-0.6
3,631,666	+		Rv3252c	0.74	+0.6
3,631,666	+		Rv3252c	0.74	+0.1
3,631,667	-		Rv3252c	0.74	+0.1
3,631,667	-		Rv3252c	0.74	-0.1
3,631,667	-		Rv3252c	0.74	-0.4
3,631,667	-		Rv3252c	0.74	+0.0
3,631,667	-		Rv3252c	0.74	+0.1
3,631,667	-		Rv3252c	0.74	+0.4
3,631,667	-		Rv3252c	0.74	-1.4
3,631,667	-		Rv3252c	0.74	+0.8
3,631,672	+		Rv3252c	0.75	-1.5
3,631,672	+		Rv3252c	0.75	-0.3
3,631,672	+		Rv3252c	0.75	-2.3
3,631,673	-		Rv3252c	0.75	-1.2
3,631,687	+		Rv3252c	0.76	-0.5
3,631,690	+		Rv3252c	0.76	-0.3
3,631,690	+		Rv3252c	0.76	-0.3
3,631,690	+		Rv3252c	0.76	-1.0
3,631,690	+		Rv3252c	0.76	-0.5
3,631,690	+		Rv3252c	0.76	+0.7
3,631,755	+		Rv3252c	0.81	-0.1
3,631,756	-		Rv3252c	0.81	+0.1
3,631,756	-		Rv3252c	0.81	-1.5
3,631,756	-		Rv3252c	0.81	+0.8
3,631,780	+		Rv3252c	0.83	-1.3
3,631,780	+		Rv3252c	0.83	+1.8
3,631,909	+				-1.1
3,631,909	+				+1.8
3,631,988	+				-0.1
3,631,988	+				-0.0
3,631,988	+				-0.5
3,631,988	+				+0.5
3,631,989	-				-1.2
3,632,051	-				-0.5
3,632,062	+				-0.5
3,632,093	+				+0.9
3,632,093	+				-1.6
3,632,094	-				-0.6
3,632,161	+				-0.2
3,632,171	-				-2.3
3,632,274	+		Rv3253c	0.12	-0.6
3,632,617	+		Rv3253c	0.35	-0.3
3,632,617	+		Rv3253c	0.35	-0.8
3,632,689	+		Rv3253c	0.40	-1.6
3,632,689	+		Rv3253c	0.40	-1.8
3,632,689	+		Rv3253c	0.40	-0.0
3,632,689	+		Rv3253c	0.40	-0.9
3,632,689	+		Rv3253c	0.40	-0.6
3,632,690	-		Rv3253c	0.40	-0.1
3,632,690	-		Rv3253c	0.40	-0.8
3,632,729	-		Rv3253c	0.42	-0.3
3,632,873	-		Rv3253c	0.52	-0.7
3,632,881	+		Rv3253c	0.53	-0.5
3,632,882	-		Rv3253c	0.53	-0.2
3,632,882	-		Rv3253c	0.53	-0.1
3,632,977	+		Rv3253c	0.59	-1.2