Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05945 and HMPREF1058_RS05940 are separated by 4 nucleotides HMPREF1058_RS05940 and HMPREF1058_RS05935 are separated by 28 nucleotides HMPREF1058_RS05935 and HMPREF1058_RS05930 are separated by 58 nucleotides
HMPREF1058_RS05945: HMPREF1058_RS05945 - DUF4836 family protein, at 43,951 to 45,483
_RS05945
HMPREF1058_RS05940: HMPREF1058_RS05940 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 45,488 to 46,189
_RS05940
HMPREF1058_RS05935: HMPREF1058_RS05935 - bifunctional nuclease family protein, at 46,218 to 46,784
_RS05935
HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120
_RS05930
Position (kb) 46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 45.258 kb on - strand, within HMPREF1058_RS05945 at 45.397 kb on - strand at 45.408 kb on - strand at 45.471 kb on + strand at 45.484 kb on - strand at 45.503 kb on + strand at 45.514 kb on + strand at 45.514 kb on + strand at 45.592 kb on + strand, within HMPREF1058_RS05940 at 45.669 kb on - strand, within HMPREF1058_RS05940 at 45.751 kb on + strand, within HMPREF1058_RS05940 at 45.752 kb on - strand, within HMPREF1058_RS05940 at 45.961 kb on + strand, within HMPREF1058_RS05940 at 46.047 kb on - strand, within HMPREF1058_RS05940 at 46.085 kb on + strand, within HMPREF1058_RS05940 at 46.164 kb on - strand at 46.164 kb on - strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.190 kb on - strand at 46.212 kb on + strand at 46.212 kb on + strand at 46.213 kb on - strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.225 kb on - strand at 46.225 kb on - strand at 46.350 kb on + strand, within HMPREF1058_RS05935 at 46.351 kb on - strand, within HMPREF1058_RS05935 at 46.351 kb on - strand, within HMPREF1058_RS05935 at 46.419 kb on - strand, within HMPREF1058_RS05935 at 46.420 kb on + strand, within HMPREF1058_RS05935 at 46.421 kb on - strand, within HMPREF1058_RS05935 at 46.476 kb on + strand, within HMPREF1058_RS05935 at 46.482 kb on - strand, within HMPREF1058_RS05935 at 46.514 kb on - strand, within HMPREF1058_RS05935 at 46.514 kb on - strand, within HMPREF1058_RS05935 at 46.542 kb on - strand, within HMPREF1058_RS05935 at 46.542 kb on - strand, within HMPREF1058_RS05935 at 46.543 kb on + strand, within HMPREF1058_RS05935 at 46.544 kb on - strand, within HMPREF1058_RS05935 at 46.545 kb on + strand, within HMPREF1058_RS05935 at 46.546 kb on - strand, within HMPREF1058_RS05935 at 46.551 kb on + strand, within HMPREF1058_RS05935 at 46.552 kb on - strand, within HMPREF1058_RS05935 at 46.625 kb on + strand, within HMPREF1058_RS05935 at 46.628 kb on - strand, within HMPREF1058_RS05935 at 46.646 kb on + strand, within HMPREF1058_RS05935 at 46.650 kb on - strand, within HMPREF1058_RS05935 at 46.676 kb on + strand, within HMPREF1058_RS05935 at 46.677 kb on - strand, within HMPREF1058_RS05935 at 46.724 kb on - strand, within HMPREF1058_RS05935 at 46.754 kb on + strand at 46.755 kb on - strand at 46.774 kb on - strand at 46.774 kb on - strand at 46.785 kb on - strand at 46.789 kb on + strand at 46.841 kb on + strand at 46.867 kb on - strand at 46.868 kb on + strand at 46.868 kb on + strand at 46.868 kb on + strand at 47.077 kb on + strand, within HMPREF1058_RS05930 at 47.141 kb on + strand, within HMPREF1058_RS05930 at 47.241 kb on + strand, within HMPREF1058_RS05930 at 47.242 kb on - strand, within HMPREF1058_RS05930 at 47.285 kb on - strand, within HMPREF1058_RS05930 at 47.289 kb on + strand, within HMPREF1058_RS05930 at 47.289 kb on + strand, within HMPREF1058_RS05930 at 47.447 kb on - strand, within HMPREF1058_RS05930 at 47.447 kb on - strand, within HMPREF1058_RS05930 at 47.457 kb on + strand, within HMPREF1058_RS05930 at 47.539 kb on + strand, within HMPREF1058_RS05930 at 47.578 kb on + strand, within HMPREF1058_RS05930 at 47.613 kb on + strand, within HMPREF1058_RS05930 at 47.615 kb on + strand, within HMPREF1058_RS05930 at 47.738 kb on + strand, within HMPREF1058_RS05930 at 47.774 kb on + strand, within HMPREF1058_RS05930 at 47.775 kb on - strand, within HMPREF1058_RS05930 at 47.782 kb on + strand, within HMPREF1058_RS05930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 45,258 - HMPREF1058_RS05945 0.85 +1.1 45,397 - -1.3 45,408 - -0.6 45,471 + +0.3 45,484 - -2.0 45,503 + -0.1 45,514 + -0.3 45,514 + +0.0 45,592 + HMPREF1058_RS05940 0.15 +0.6 45,669 - HMPREF1058_RS05940 0.26 -3.2 45,751 + HMPREF1058_RS05940 0.37 -1.3 45,752 - HMPREF1058_RS05940 0.38 -2.8 45,961 + HMPREF1058_RS05940 0.67 -0.4 46,047 - HMPREF1058_RS05940 0.80 -1.0 46,085 + HMPREF1058_RS05940 0.85 -0.6 46,164 - -1.6 46,164 - +0.6 46,189 + -2.3 46,189 + -2.6 46,189 + -1.9 46,189 + +1.1 46,189 + -1.0 46,190 - -1.0 46,212 + -1.3 46,212 + +0.0 46,213 - +0.3 46,224 + -2.6 46,224 + +1.2 46,225 - +2.5 46,225 - +0.5 46,350 + HMPREF1058_RS05935 0.23 -0.2 46,351 - HMPREF1058_RS05935 0.23 +1.5 46,351 - HMPREF1058_RS05935 0.23 +1.3 46,419 - HMPREF1058_RS05935 0.35 +1.5 46,420 + HMPREF1058_RS05935 0.36 +5.1 46,421 - HMPREF1058_RS05935 0.36 +2.1 46,476 + HMPREF1058_RS05935 0.46 +0.4 46,482 - HMPREF1058_RS05935 0.47 -0.6 46,514 - HMPREF1058_RS05935 0.52 +2.3 46,514 - HMPREF1058_RS05935 0.52 +0.6 46,542 - HMPREF1058_RS05935 0.57 +0.0 46,542 - HMPREF1058_RS05935 0.57 -1.0 46,543 + HMPREF1058_RS05935 0.57 +3.0 46,544 - HMPREF1058_RS05935 0.57 +0.7 46,545 + HMPREF1058_RS05935 0.58 +2.0 46,546 - HMPREF1058_RS05935 0.58 -1.6 46,551 + HMPREF1058_RS05935 0.59 +1.8 46,552 - HMPREF1058_RS05935 0.59 +1.3 46,625 + HMPREF1058_RS05935 0.72 +0.6 46,628 - HMPREF1058_RS05935 0.72 +0.3 46,646 + HMPREF1058_RS05935 0.75 +2.3 46,650 - HMPREF1058_RS05935 0.76 -0.5 46,676 + HMPREF1058_RS05935 0.81 -1.0 46,677 - HMPREF1058_RS05935 0.81 -3.2 46,724 - HMPREF1058_RS05935 0.89 +0.0 46,754 + +3.7 46,755 - +0.6 46,774 - +0.5 46,774 - -1.0 46,785 - +0.0 46,789 + -0.2 46,841 + -1.0 46,867 - +0.6 46,868 + -1.8 46,868 + -2.2 46,868 + +3.7 47,077 + HMPREF1058_RS05930 0.18 +0.0 47,141 + HMPREF1058_RS05930 0.23 -1.2 47,241 + HMPREF1058_RS05930 0.31 -3.0 47,242 - HMPREF1058_RS05930 0.31 -0.7 47,285 - HMPREF1058_RS05930 0.35 -1.6 47,289 + HMPREF1058_RS05930 0.35 -2.2 47,289 + HMPREF1058_RS05930 0.35 +0.0 47,447 - HMPREF1058_RS05930 0.47 -1.0 47,447 - HMPREF1058_RS05930 0.47 +1.8 47,457 + HMPREF1058_RS05930 0.48 -1.6 47,539 + HMPREF1058_RS05930 0.54 -1.6 47,578 + HMPREF1058_RS05930 0.58 -2.3 47,613 + HMPREF1058_RS05930 0.60 -1.0 47,615 + HMPREF1058_RS05930 0.60 -0.2 47,738 + HMPREF1058_RS05930 0.70 -1.6 47,774 + HMPREF1058_RS05930 0.73 -1.7 47,775 - HMPREF1058_RS05930 0.73 -2.3 47,782 + HMPREF1058_RS05930 0.73 -2.3
Or see this region's nucleotide sequence