Experiment: TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02062 and MPMX20_02063 are separated by 94 nucleotides MPMX20_02063 and MPMX20_02064 are separated by 130 nucleotides MPMX20_02064 and MPMX20_02065 overlap by 66 nucleotides
MPMX20_02062: MPMX20_02062 - Hca operon transcriptional activator HcaR, at 2,155,902 to 2,156,834
_02062
MPMX20_02063: MPMX20_02063 - Protein mlc, at 2,156,929 to 2,158,149
_02063
MPMX20_02064: MPMX20_02064 - ATP-dependent dethiobiotin synthetase BioD 1, at 2,158,280 to 2,158,975
_02064
MPMX20_02065: MPMX20_02065 - Voltage-gated ClC-type chloride channel ClcB, at 2,158,910 to 2,160,220
_02065
Position (kb)
2156
2157
2158
2159 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13 at 2155.950 kb on - strand at 2156.012 kb on + strand, within MPMX20_02062 at 2156.021 kb on - strand, within MPMX20_02062 at 2156.041 kb on - strand, within MPMX20_02062 at 2156.041 kb on - strand, within MPMX20_02062 at 2156.057 kb on + strand, within MPMX20_02062 at 2156.068 kb on + strand, within MPMX20_02062 at 2156.203 kb on + strand, within MPMX20_02062 at 2156.203 kb on + strand, within MPMX20_02062 at 2156.203 kb on + strand, within MPMX20_02062 at 2156.318 kb on + strand, within MPMX20_02062 at 2156.340 kb on + strand, within MPMX20_02062 at 2156.396 kb on - strand, within MPMX20_02062 at 2156.400 kb on + strand, within MPMX20_02062 at 2156.501 kb on + strand, within MPMX20_02062 at 2156.501 kb on + strand, within MPMX20_02062 at 2156.506 kb on + strand, within MPMX20_02062 at 2156.506 kb on + strand, within MPMX20_02062 at 2156.506 kb on + strand, within MPMX20_02062 at 2156.509 kb on - strand, within MPMX20_02062 at 2156.509 kb on - strand, within MPMX20_02062 at 2156.514 kb on - strand, within MPMX20_02062 at 2156.551 kb on + strand, within MPMX20_02062 at 2156.553 kb on - strand, within MPMX20_02062 at 2156.559 kb on - strand, within MPMX20_02062 at 2156.596 kb on + strand, within MPMX20_02062 at 2156.604 kb on - strand, within MPMX20_02062 at 2156.606 kb on + strand, within MPMX20_02062 at 2156.637 kb on - strand, within MPMX20_02062 at 2156.728 kb on - strand, within MPMX20_02062 at 2156.734 kb on + strand, within MPMX20_02062 at 2156.734 kb on + strand, within MPMX20_02062 at 2156.744 kb on + strand at 2156.744 kb on + strand at 2156.757 kb on - strand at 2156.762 kb on + strand at 2156.762 kb on - strand at 2156.770 kb on - strand at 2156.770 kb on - strand at 2156.770 kb on - strand at 2156.770 kb on - strand at 2156.774 kb on + strand at 2156.775 kb on + strand at 2156.785 kb on + strand at 2156.890 kb on - strand at 2156.971 kb on - strand at 2156.973 kb on + strand at 2156.981 kb on - strand at 2157.017 kb on - strand at 2157.052 kb on - strand, within MPMX20_02063 at 2157.098 kb on - strand, within MPMX20_02063 at 2157.166 kb on - strand, within MPMX20_02063 at 2157.190 kb on - strand, within MPMX20_02063 at 2157.196 kb on - strand, within MPMX20_02063 at 2157.196 kb on - strand, within MPMX20_02063 at 2157.221 kb on + strand, within MPMX20_02063 at 2157.221 kb on + strand, within MPMX20_02063 at 2157.229 kb on - strand, within MPMX20_02063 at 2157.243 kb on - strand, within MPMX20_02063 at 2157.279 kb on + strand, within MPMX20_02063 at 2157.305 kb on + strand, within MPMX20_02063 at 2157.353 kb on + strand, within MPMX20_02063 at 2157.423 kb on - strand, within MPMX20_02063 at 2157.443 kb on + strand, within MPMX20_02063 at 2157.451 kb on - strand, within MPMX20_02063 at 2157.462 kb on + strand, within MPMX20_02063 at 2157.543 kb on + strand, within MPMX20_02063 at 2157.590 kb on + strand, within MPMX20_02063 at 2157.637 kb on + strand, within MPMX20_02063 at 2157.652 kb on - strand, within MPMX20_02063 at 2157.717 kb on - strand, within MPMX20_02063 at 2157.749 kb on + strand, within MPMX20_02063 at 2157.765 kb on + strand, within MPMX20_02063 at 2157.765 kb on + strand, within MPMX20_02063 at 2157.765 kb on + strand, within MPMX20_02063 at 2157.765 kb on + strand, within MPMX20_02063 at 2157.770 kb on + strand, within MPMX20_02063 at 2157.773 kb on - strand, within MPMX20_02063 at 2157.773 kb on - strand, within MPMX20_02063 at 2157.773 kb on - strand, within MPMX20_02063 at 2157.773 kb on - strand, within MPMX20_02063 at 2157.773 kb on - strand, within MPMX20_02063 at 2157.773 kb on - strand, within MPMX20_02063 at 2157.782 kb on - strand, within MPMX20_02063 at 2157.807 kb on + strand, within MPMX20_02063 at 2157.815 kb on - strand, within MPMX20_02063 at 2157.828 kb on - strand, within MPMX20_02063 at 2157.853 kb on - strand, within MPMX20_02063 at 2157.955 kb on + strand, within MPMX20_02063 at 2157.963 kb on - strand, within MPMX20_02063 at 2157.963 kb on - strand, within MPMX20_02063 at 2157.991 kb on + strand, within MPMX20_02063 at 2158.085 kb on + strand at 2158.090 kb on + strand at 2158.090 kb on + strand at 2158.093 kb on - strand at 2158.093 kb on - strand at 2158.098 kb on - strand at 2158.098 kb on - strand at 2158.098 kb on - strand at 2158.098 kb on - strand at 2158.098 kb on - strand at 2158.098 kb on - strand at 2158.098 kb on - strand at 2158.123 kb on + strand at 2158.137 kb on + strand at 2158.143 kb on + strand at 2158.151 kb on - strand at 2158.182 kb on + strand at 2158.182 kb on + strand at 2158.182 kb on + strand at 2158.187 kb on + strand at 2158.190 kb on - strand at 2158.190 kb on - strand at 2158.190 kb on - strand at 2158.190 kb on - strand at 2158.190 kb on - strand at 2158.192 kb on + strand at 2158.204 kb on + strand at 2158.215 kb on - strand at 2158.331 kb on + strand at 2158.339 kb on - strand at 2158.339 kb on - strand at 2158.354 kb on + strand, within MPMX20_02064 at 2158.387 kb on + strand, within MPMX20_02064 at 2158.395 kb on - strand, within MPMX20_02064 at 2158.517 kb on + strand, within MPMX20_02064 at 2158.525 kb on - strand, within MPMX20_02064 at 2158.525 kb on - strand, within MPMX20_02064 at 2158.535 kb on - strand, within MPMX20_02064 at 2158.559 kb on - strand, within MPMX20_02064 at 2158.609 kb on + strand, within MPMX20_02064 at 2158.668 kb on + strand, within MPMX20_02064 at 2158.695 kb on + strand, within MPMX20_02064 at 2158.797 kb on + strand, within MPMX20_02064 at 2158.811 kb on - strand, within MPMX20_02064 at 2158.821 kb on + strand, within MPMX20_02064 at 2158.879 kb on + strand, within MPMX20_02064 at 2158.893 kb on + strand, within MPMX20_02064 at 2158.901 kb on - strand, within MPMX20_02064 at 2158.901 kb on - strand, within MPMX20_02064 at 2158.911 kb on - strand at 2158.921 kb on - strand at 2159.067 kb on + strand, within MPMX20_02065 at 2159.067 kb on + strand, within MPMX20_02065
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b remove 2,155,950 - +0.8 2,156,012 + MPMX20_02062 0.12 -0.8 2,156,021 - MPMX20_02062 0.13 -0.2 2,156,041 - MPMX20_02062 0.15 +0.1 2,156,041 - MPMX20_02062 0.15 -1.2 2,156,057 + MPMX20_02062 0.17 +0.0 2,156,068 + MPMX20_02062 0.18 -1.2 2,156,203 + MPMX20_02062 0.32 -0.5 2,156,203 + MPMX20_02062 0.32 +1.6 2,156,203 + MPMX20_02062 0.32 -0.9 2,156,318 + MPMX20_02062 0.45 -2.0 2,156,340 + MPMX20_02062 0.47 -0.0 2,156,396 - MPMX20_02062 0.53 +0.0 2,156,400 + MPMX20_02062 0.53 -1.4 2,156,501 + MPMX20_02062 0.64 -0.9 2,156,501 + MPMX20_02062 0.64 -0.5 2,156,506 + MPMX20_02062 0.65 -0.6 2,156,506 + MPMX20_02062 0.65 -0.2 2,156,506 + MPMX20_02062 0.65 -0.6 2,156,509 - MPMX20_02062 0.65 +1.0 2,156,509 - MPMX20_02062 0.65 -1.9 2,156,514 - MPMX20_02062 0.66 +0.2 2,156,551 + MPMX20_02062 0.70 -0.2 2,156,553 - MPMX20_02062 0.70 +0.2 2,156,559 - MPMX20_02062 0.70 +0.6 2,156,596 + MPMX20_02062 0.74 -1.2 2,156,604 - MPMX20_02062 0.75 -0.5 2,156,606 + MPMX20_02062 0.75 -0.6 2,156,637 - MPMX20_02062 0.79 -2.2 2,156,728 - MPMX20_02062 0.89 +0.2 2,156,734 + MPMX20_02062 0.89 +0.8 2,156,734 + MPMX20_02062 0.89 +0.1 2,156,744 + -1.6 2,156,744 + -0.8 2,156,757 - -1.2 2,156,762 + +1.2 2,156,762 - -0.2 2,156,770 - -1.6 2,156,770 - -0.5 2,156,770 - -2.5 2,156,770 - +1.6 2,156,774 + -0.4 2,156,775 + -0.1 2,156,785 + -0.8 2,156,890 - -1.2 2,156,971 - +1.1 2,156,973 + -0.3 2,156,981 - +1.2 2,157,017 - +1.1 2,157,052 - MPMX20_02063 0.10 -0.8 2,157,098 - MPMX20_02063 0.14 +0.5 2,157,166 - MPMX20_02063 0.19 +0.1 2,157,190 - MPMX20_02063 0.21 -0.6 2,157,196 - MPMX20_02063 0.22 -0.4 2,157,196 - MPMX20_02063 0.22 +0.6 2,157,221 + MPMX20_02063 0.24 -0.6 2,157,221 + MPMX20_02063 0.24 -1.2 2,157,229 - MPMX20_02063 0.25 +0.6 2,157,243 - MPMX20_02063 0.26 -1.1 2,157,279 + MPMX20_02063 0.29 +0.2 2,157,305 + MPMX20_02063 0.31 -0.2 2,157,353 + MPMX20_02063 0.35 +0.9 2,157,423 - MPMX20_02063 0.40 -0.2 2,157,443 + MPMX20_02063 0.42 +1.8 2,157,451 - MPMX20_02063 0.43 +0.1 2,157,462 + MPMX20_02063 0.44 +1.5 2,157,543 + MPMX20_02063 0.50 +2.2 2,157,590 + MPMX20_02063 0.54 +12.9 2,157,637 + MPMX20_02063 0.58 -0.1 2,157,652 - MPMX20_02063 0.59 -1.2 2,157,717 - MPMX20_02063 0.65 -0.8 2,157,749 + MPMX20_02063 0.67 -0.2 2,157,765 + MPMX20_02063 0.68 +0.2 2,157,765 + MPMX20_02063 0.68 -1.7 2,157,765 + MPMX20_02063 0.68 -0.1 2,157,765 + MPMX20_02063 0.68 +0.6 2,157,770 + MPMX20_02063 0.69 -0.3 2,157,773 - MPMX20_02063 0.69 +0.9 2,157,773 - MPMX20_02063 0.69 -0.8 2,157,773 - MPMX20_02063 0.69 -0.2 2,157,773 - MPMX20_02063 0.69 +0.2 2,157,773 - MPMX20_02063 0.69 -2.1 2,157,773 - MPMX20_02063 0.69 +2.2 2,157,782 - MPMX20_02063 0.70 -1.0 2,157,807 + MPMX20_02063 0.72 -0.4 2,157,815 - MPMX20_02063 0.73 +0.1 2,157,828 - MPMX20_02063 0.74 +2.4 2,157,853 - MPMX20_02063 0.76 +1.2 2,157,955 + MPMX20_02063 0.84 +0.9 2,157,963 - MPMX20_02063 0.85 -0.4 2,157,963 - MPMX20_02063 0.85 -0.3 2,157,991 + MPMX20_02063 0.87 +0.8 2,158,085 + +2.5 2,158,090 + -1.6 2,158,090 + +1.6 2,158,093 - -0.4 2,158,093 - +0.2 2,158,098 - -0.8 2,158,098 - -1.3 2,158,098 - +0.2 2,158,098 - -1.7 2,158,098 - +0.1 2,158,098 - +1.6 2,158,098 - -1.0 2,158,123 + +0.9 2,158,137 + +0.6 2,158,143 + +1.0 2,158,151 - +0.2 2,158,182 + +0.6 2,158,182 + -0.7 2,158,182 + -0.2 2,158,187 + +1.3 2,158,190 - -1.3 2,158,190 - -1.5 2,158,190 - +0.7 2,158,190 - -1.0 2,158,190 - -1.0 2,158,192 + -0.3 2,158,204 + -0.9 2,158,215 - -0.2 2,158,331 + +0.6 2,158,339 - -0.1 2,158,339 - -1.5 2,158,354 + MPMX20_02064 0.11 -1.6 2,158,387 + MPMX20_02064 0.15 -0.1 2,158,395 - MPMX20_02064 0.17 -2.5 2,158,517 + MPMX20_02064 0.34 -0.5 2,158,525 - MPMX20_02064 0.35 +0.1 2,158,525 - MPMX20_02064 0.35 -0.3 2,158,535 - MPMX20_02064 0.37 -0.9 2,158,559 - MPMX20_02064 0.40 +1.2 2,158,609 + MPMX20_02064 0.47 +0.2 2,158,668 + MPMX20_02064 0.56 +0.7 2,158,695 + MPMX20_02064 0.60 -1.9 2,158,797 + MPMX20_02064 0.74 -0.7 2,158,811 - MPMX20_02064 0.76 -0.2 2,158,821 + MPMX20_02064 0.78 -0.4 2,158,879 + MPMX20_02064 0.86 +2.0 2,158,893 + MPMX20_02064 0.88 +0.9 2,158,901 - MPMX20_02064 0.89 -1.0 2,158,901 - MPMX20_02064 0.89 +0.2 2,158,911 - -2.0 2,158,921 - -0.8 2,159,067 + MPMX20_02065 0.12 -0.8 2,159,067 + MPMX20_02065 0.12 -0.3
Or see this region's nucleotide sequence