Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00254

Experiment: TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00253 and MPMX20_00254 are separated by 114 nucleotidesMPMX20_00254 and MPMX20_00255 are separated by 180 nucleotidesMPMX20_00255 and MPMX20_00256 are separated by 12 nucleotides MPMX20_00253: MPMX20_00253 - Maltoporin, at 270,585 to 271,895 _00253 MPMX20_00254: MPMX20_00254 - hypothetical protein, at 272,010 to 272,963 _00254 MPMX20_00255: MPMX20_00255 - Chorismate pyruvate-lyase, at 273,144 to 273,641 _00255 MPMX20_00256: MPMX20_00256 - 4-hydroxybenzoate octaprenyltransferase, at 273,654 to 274,523 _00256 Position (kb) 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 271.018 kb on + strand, within MPMX20_00253at 271.076 kb on + strand, within MPMX20_00253at 271.113 kb on + strand, within MPMX20_00253at 271.113 kb on + strand, within MPMX20_00253at 271.167 kb on + strand, within MPMX20_00253at 271.225 kb on + strand, within MPMX20_00253at 271.244 kb on - strand, within MPMX20_00253at 271.283 kb on + strand, within MPMX20_00253at 271.291 kb on + strand, within MPMX20_00253at 271.291 kb on - strand, within MPMX20_00253at 271.367 kb on + strand, within MPMX20_00253at 271.402 kb on - strand, within MPMX20_00253at 271.457 kb on + strand, within MPMX20_00253at 271.488 kb on + strand, within MPMX20_00253at 271.535 kb on + strand, within MPMX20_00253at 271.535 kb on + strand, within MPMX20_00253at 271.540 kb on - strand, within MPMX20_00253at 271.547 kb on + strand, within MPMX20_00253at 271.547 kb on + strand, within MPMX20_00253at 271.547 kb on + strand, within MPMX20_00253at 271.548 kb on - strand, within MPMX20_00253at 271.555 kb on + strand, within MPMX20_00253at 271.555 kb on + strand, within MPMX20_00253at 271.592 kb on + strand, within MPMX20_00253at 271.604 kb on + strand, within MPMX20_00253at 271.604 kb on + strand, within MPMX20_00253at 271.604 kb on + strand, within MPMX20_00253at 271.614 kb on + strand, within MPMX20_00253at 271.622 kb on - strand, within MPMX20_00253at 271.680 kb on + strand, within MPMX20_00253at 271.791 kb on + strandat 271.791 kb on + strandat 271.791 kb on + strandat 271.791 kb on + strandat 271.791 kb on + strandat 271.791 kb on + strandat 271.791 kb on + strandat 271.799 kb on - strandat 271.799 kb on - strandat 271.799 kb on - strandat 271.799 kb on - strandat 271.857 kb on - strandat 271.862 kb on + strandat 271.898 kb on + strandat 271.906 kb on - strandat 271.940 kb on + strandat 271.946 kb on + strandat 271.948 kb on - strandat 271.948 kb on - strandat 271.976 kb on - strandat 271.986 kb on - strandat 272.008 kb on - strandat 272.065 kb on + strandat 272.088 kb on + strandat 272.156 kb on + strand, within MPMX20_00254at 272.159 kb on - strand, within MPMX20_00254at 272.186 kb on - strand, within MPMX20_00254at 272.226 kb on - strand, within MPMX20_00254at 272.226 kb on - strand, within MPMX20_00254at 272.275 kb on - strand, within MPMX20_00254at 272.285 kb on + strand, within MPMX20_00254at 272.287 kb on + strand, within MPMX20_00254at 272.287 kb on + strand, within MPMX20_00254at 272.295 kb on - strand, within MPMX20_00254at 272.313 kb on + strand, within MPMX20_00254at 272.321 kb on - strand, within MPMX20_00254at 272.345 kb on + strand, within MPMX20_00254at 272.378 kb on + strand, within MPMX20_00254at 272.402 kb on + strand, within MPMX20_00254at 272.430 kb on - strand, within MPMX20_00254at 272.447 kb on - strand, within MPMX20_00254at 272.461 kb on + strand, within MPMX20_00254at 272.461 kb on + strand, within MPMX20_00254at 272.471 kb on + strand, within MPMX20_00254at 272.521 kb on + strand, within MPMX20_00254at 272.529 kb on - strand, within MPMX20_00254at 272.529 kb on - strand, within MPMX20_00254at 272.531 kb on + strand, within MPMX20_00254at 272.574 kb on + strand, within MPMX20_00254at 272.574 kb on + strand, within MPMX20_00254at 272.615 kb on - strand, within MPMX20_00254at 272.706 kb on + strand, within MPMX20_00254at 272.714 kb on - strand, within MPMX20_00254at 272.716 kb on + strand, within MPMX20_00254at 272.724 kb on - strand, within MPMX20_00254at 272.727 kb on + strand, within MPMX20_00254at 272.813 kb on - strand, within MPMX20_00254at 272.826 kb on - strand, within MPMX20_00254at 272.904 kb on + strandat 272.904 kb on + strandat 272.942 kb on - strandat 272.952 kb on + strandat 272.958 kb on + strandat 272.958 kb on + strandat 272.966 kb on - strandat 272.993 kb on + strandat 272.993 kb on + strandat 273.154 kb on - strandat 273.154 kb on - strandat 273.187 kb on - strandat 273.297 kb on - strand, within MPMX20_00255at 273.304 kb on + strand, within MPMX20_00255at 273.312 kb on - strand, within MPMX20_00255at 273.313 kb on - strand, within MPMX20_00255at 273.328 kb on + strand, within MPMX20_00255at 273.328 kb on + strand, within MPMX20_00255at 273.328 kb on + strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.433 kb on + strand, within MPMX20_00255at 273.448 kb on + strand, within MPMX20_00255at 273.485 kb on + strand, within MPMX20_00255at 273.508 kb on + strand, within MPMX20_00255at 273.508 kb on + strand, within MPMX20_00255at 273.516 kb on - strand, within MPMX20_00255at 273.555 kb on + strand, within MPMX20_00255at 273.557 kb on + strand, within MPMX20_00255at 273.630 kb on + strandat 273.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
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271,018 + MPMX20_00253 0.33 +0.9
271,076 + MPMX20_00253 0.37 +2.2
271,113 + MPMX20_00253 0.40 -0.1
271,113 + MPMX20_00253 0.40 -0.9
271,167 + MPMX20_00253 0.44 +0.1
271,225 + MPMX20_00253 0.49 +1.2
271,244 - MPMX20_00253 0.50 +1.0
271,283 + MPMX20_00253 0.53 -1.3
271,291 + MPMX20_00253 0.54 -0.9
271,291 - MPMX20_00253 0.54 -0.8
271,367 + MPMX20_00253 0.60 -0.5
271,402 - MPMX20_00253 0.62 -0.6
271,457 + MPMX20_00253 0.67 -1.5
271,488 + MPMX20_00253 0.69 -0.6
271,535 + MPMX20_00253 0.72 -3.1
271,535 + MPMX20_00253 0.72 +1.7
271,540 - MPMX20_00253 0.73 -0.6
271,547 + MPMX20_00253 0.73 -1.8
271,547 + MPMX20_00253 0.73 +0.3
271,547 + MPMX20_00253 0.73 +0.1
271,548 - MPMX20_00253 0.73 -2.2
271,555 + MPMX20_00253 0.74 +0.5
271,555 + MPMX20_00253 0.74 +0.7
271,592 + MPMX20_00253 0.77 +1.1
271,604 + MPMX20_00253 0.78 -0.3
271,604 + MPMX20_00253 0.78 -0.6
271,604 + MPMX20_00253 0.78 +5.8
271,614 + MPMX20_00253 0.78 -1.6
271,622 - MPMX20_00253 0.79 +0.7
271,680 + MPMX20_00253 0.84 -0.3
271,791 + -0.1
271,791 + -1.3
271,791 + -1.9
271,791 + -0.1
271,791 + +0.3
271,791 + -0.4
271,791 + -0.6
271,799 - -0.4
271,799 - +1.8
271,799 - -0.1
271,799 - +2.2
271,857 - +1.2
271,862 + +1.2
271,898 + +0.0
271,906 - -0.4
271,940 + +0.1
271,946 + +0.7
271,948 - +0.2
271,948 - -0.9
271,976 - -1.0
271,986 - -0.3
272,008 - -0.6
272,065 + +0.3
272,088 + -0.0
272,156 + MPMX20_00254 0.15 +0.2
272,159 - MPMX20_00254 0.16 +0.3
272,186 - MPMX20_00254 0.18 -0.3
272,226 - MPMX20_00254 0.23 -2.1
272,226 - MPMX20_00254 0.23 +0.7
272,275 - MPMX20_00254 0.28 +2.2
272,285 + MPMX20_00254 0.29 -1.8
272,287 + MPMX20_00254 0.29 -0.3
272,287 + MPMX20_00254 0.29 +0.4
272,295 - MPMX20_00254 0.30 -0.7
272,313 + MPMX20_00254 0.32 -2.1
272,321 - MPMX20_00254 0.33 +0.5
272,345 + MPMX20_00254 0.35 +0.6
272,378 + MPMX20_00254 0.39 -0.3
272,402 + MPMX20_00254 0.41 +0.2
272,430 - MPMX20_00254 0.44 -1.5
272,447 - MPMX20_00254 0.46 -0.2
272,461 + MPMX20_00254 0.47 +0.6
272,461 + MPMX20_00254 0.47 +2.2
272,471 + MPMX20_00254 0.48 -0.5
272,521 + MPMX20_00254 0.54 +0.2
272,529 - MPMX20_00254 0.54 -0.2
272,529 - MPMX20_00254 0.54 -1.0
272,531 + MPMX20_00254 0.55 -2.2
272,574 + MPMX20_00254 0.59 -0.7
272,574 + MPMX20_00254 0.59 -0.1
272,615 - MPMX20_00254 0.63 -0.8
272,706 + MPMX20_00254 0.73 +2.2
272,714 - MPMX20_00254 0.74 +1.7
272,716 + MPMX20_00254 0.74 +2.2
272,724 - MPMX20_00254 0.75 +0.9
272,727 + MPMX20_00254 0.75 -0.6
272,813 - MPMX20_00254 0.84 +0.9
272,826 - MPMX20_00254 0.86 -0.3
272,904 + -0.8
272,904 + -0.3
272,942 - -1.0
272,952 + -2.7
272,958 + +1.0
272,958 + +1.2
272,966 - +0.2
272,993 + +1.0
272,993 + -0.3
273,154 - -1.5
273,154 - +0.9
273,187 - +0.2
273,297 - MPMX20_00255 0.31 +0.2
273,304 + MPMX20_00255 0.32 -1.3
273,312 - MPMX20_00255 0.34 -1.2
273,313 - MPMX20_00255 0.34 -0.8
273,328 + MPMX20_00255 0.37 +2.2
273,328 + MPMX20_00255 0.37 -0.5
273,328 + MPMX20_00255 0.37 -0.2
273,336 - MPMX20_00255 0.39 +0.8
273,336 - MPMX20_00255 0.39 -2.3
273,336 - MPMX20_00255 0.39 -1.5
273,336 - MPMX20_00255 0.39 -0.1
273,433 + MPMX20_00255 0.58 -0.9
273,448 + MPMX20_00255 0.61 +0.4
273,485 + MPMX20_00255 0.68 -1.1
273,508 + MPMX20_00255 0.73 +0.1
273,508 + MPMX20_00255 0.73 +0.4
273,516 - MPMX20_00255 0.75 -0.9
273,555 + MPMX20_00255 0.83 -0.9
273,557 + MPMX20_00255 0.83 -0.1
273,630 + -0.1
273,630 + +0.9

Or see this region's nucleotide sequence