Experiment: M9 plate, 1:1 coculture with Flavobacterium anhuiense SO6b
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04229 and MPMX20_04230 overlap by 17 nucleotides MPMX20_04230 and MPMX20_04231 are separated by 72 nucleotides MPMX20_04231 and MPMX20_04232 are separated by 179 nucleotides
MPMX20_04229: MPMX20_04229 - hypothetical protein, at 4,416,384 to 4,416,857
_04229
MPMX20_04230: MPMX20_04230 - Bacterioferritin, at 4,416,841 to 4,417,317
_04230
MPMX20_04231: MPMX20_04231 - Bacterioferritin-associated ferredoxin, at 4,417,390 to 4,417,584
_04231
MPMX20_04232: MPMX20_04232 - Elongation factor Tu 1, at 4,417,764 to 4,418,948
_04232
Position (kb) 4417
4418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4416.393 kb on + strand at 4416.491 kb on + strand, within MPMX20_04229 at 4416.491 kb on + strand, within MPMX20_04229 at 4416.509 kb on - strand, within MPMX20_04229 at 4416.509 kb on - strand, within MPMX20_04229 at 4416.509 kb on - strand, within MPMX20_04229 at 4416.521 kb on + strand, within MPMX20_04229 at 4416.570 kb on + strand, within MPMX20_04229 at 4416.578 kb on - strand, within MPMX20_04229 at 4416.605 kb on + strand, within MPMX20_04229 at 4416.613 kb on - strand, within MPMX20_04229 at 4416.632 kb on - strand, within MPMX20_04229 at 4416.638 kb on - strand, within MPMX20_04229 at 4416.649 kb on - strand, within MPMX20_04229 at 4416.692 kb on - strand, within MPMX20_04229 at 4416.698 kb on + strand, within MPMX20_04229 at 4416.734 kb on + strand, within MPMX20_04229 at 4416.813 kb on + strand at 4416.911 kb on + strand, within MPMX20_04230 at 4416.911 kb on + strand, within MPMX20_04230 at 4416.919 kb on - strand, within MPMX20_04230 at 4416.979 kb on + strand, within MPMX20_04230 at 4416.979 kb on + strand, within MPMX20_04230 at 4416.981 kb on + strand, within MPMX20_04230 at 4416.987 kb on - strand, within MPMX20_04230 at 4416.987 kb on - strand, within MPMX20_04230 at 4416.989 kb on - strand, within MPMX20_04230 at 4416.989 kb on - strand, within MPMX20_04230 at 4417.000 kb on + strand, within MPMX20_04230 at 4417.008 kb on - strand, within MPMX20_04230 at 4417.008 kb on - strand, within MPMX20_04230 at 4417.008 kb on - strand, within MPMX20_04230 at 4417.008 kb on - strand, within MPMX20_04230 at 4417.043 kb on - strand, within MPMX20_04230 at 4417.115 kb on - strand, within MPMX20_04230 at 4417.185 kb on + strand, within MPMX20_04230 at 4417.344 kb on - strand at 4417.358 kb on + strand at 4417.511 kb on - strand, within MPMX20_04231 at 4417.527 kb on + strand, within MPMX20_04231 at 4417.562 kb on + strand, within MPMX20_04231 at 4417.621 kb on - strand at 4417.621 kb on - strand at 4417.652 kb on + strand at 4417.652 kb on + strand at 4417.652 kb on + strand at 4417.660 kb on - strand at 4417.660 kb on - strand at 4417.660 kb on - strand at 4417.660 kb on - strand at 4417.660 kb on - strand at 4417.662 kb on + strand at 4417.670 kb on - strand at 4417.670 kb on - strand at 4417.670 kb on - strand at 4417.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Flavobacterium anhuiense SO6b remove 4,416,393 + +0.8 4,416,491 + MPMX20_04229 0.23 +0.8 4,416,491 + MPMX20_04229 0.23 -0.2 4,416,509 - MPMX20_04229 0.26 -1.1 4,416,509 - MPMX20_04229 0.26 -1.6 4,416,509 - MPMX20_04229 0.26 +2.2 4,416,521 + MPMX20_04229 0.29 -0.9 4,416,570 + MPMX20_04229 0.39 +0.4 4,416,578 - MPMX20_04229 0.41 -0.8 4,416,605 + MPMX20_04229 0.47 +0.2 4,416,613 - MPMX20_04229 0.48 -1.1 4,416,632 - MPMX20_04229 0.52 -1.3 4,416,638 - MPMX20_04229 0.54 -1.4 4,416,649 - MPMX20_04229 0.56 +0.6 4,416,692 - MPMX20_04229 0.65 -0.9 4,416,698 + MPMX20_04229 0.66 -1.0 4,416,734 + MPMX20_04229 0.74 +1.6 4,416,813 + -0.8 4,416,911 + MPMX20_04230 0.15 +1.1 4,416,911 + MPMX20_04230 0.15 +1.9 4,416,919 - MPMX20_04230 0.16 +1.1 4,416,979 + MPMX20_04230 0.29 +2.3 4,416,979 + MPMX20_04230 0.29 +0.2 4,416,981 + MPMX20_04230 0.29 +0.9 4,416,987 - MPMX20_04230 0.31 +1.2 4,416,987 - MPMX20_04230 0.31 +1.0 4,416,989 - MPMX20_04230 0.31 +0.0 4,416,989 - MPMX20_04230 0.31 +0.4 4,417,000 + MPMX20_04230 0.33 -0.2 4,417,008 - MPMX20_04230 0.35 +1.3 4,417,008 - MPMX20_04230 0.35 +0.2 4,417,008 - MPMX20_04230 0.35 +2.4 4,417,008 - MPMX20_04230 0.35 -0.4 4,417,043 - MPMX20_04230 0.42 +0.3 4,417,115 - MPMX20_04230 0.57 +1.1 4,417,185 + MPMX20_04230 0.72 -0.8 4,417,344 - -0.1 4,417,358 + +0.8 4,417,511 - MPMX20_04231 0.62 -1.6 4,417,527 + MPMX20_04231 0.70 -0.4 4,417,562 + MPMX20_04231 0.88 -1.7 4,417,621 - -0.7 4,417,621 - -1.2 4,417,652 + -0.6 4,417,652 + -0.1 4,417,652 + -0.8 4,417,660 - -0.6 4,417,660 - -3.0 4,417,660 - +2.1 4,417,660 - +0.3 4,417,660 - +0.9 4,417,662 + -1.1 4,417,670 - -0.2 4,417,670 - -0.1 4,417,670 - +2.0 4,417,700 + -0.4
Or see this region's nucleotide sequence