Experiment: M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01506 and MPMX20_01507 are separated by 20 nucleotides MPMX20_01507 and MPMX20_01508 are separated by 226 nucleotides MPMX20_01508 and MPMX20_01509 are separated by 97 nucleotides MPMX20_01509 and MPMX20_01510 overlap by 4 nucleotides
MPMX20_01506: MPMX20_01506 - Putative ABC transporter arginine-binding protein 2, at 1,574,727 to 1,575,458
_01506
MPMX20_01507: MPMX20_01507 - Arginine transport ATP-binding protein ArtP, at 1,575,479 to 1,576,207
_01507
MPMX20_01508: MPMX20_01508 - putative lipoprotein YbjP, at 1,576,434 to 1,576,952
_01508
MPMX20_01509: MPMX20_01509 - hypothetical protein, at 1,577,050 to 1,577,373
_01509
MPMX20_01510: MPMX20_01510 - N-acetylmuramoyl-L-alanine amidase AmiD, at 1,577,370 to 1,578,200
_01510
Position (kb)
1576
1577 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1575.474 kb on - strand at 1575.538 kb on - strand at 1575.538 kb on - strand at 1575.777 kb on + strand, within MPMX20_01507 at 1575.785 kb on - strand, within MPMX20_01507 at 1575.810 kb on + strand, within MPMX20_01507 at 1575.818 kb on - strand, within MPMX20_01507 at 1575.818 kb on - strand, within MPMX20_01507 at 1575.818 kb on - strand, within MPMX20_01507 at 1575.825 kb on + strand, within MPMX20_01507 at 1575.922 kb on - strand, within MPMX20_01507 at 1575.922 kb on - strand, within MPMX20_01507 at 1575.922 kb on - strand, within MPMX20_01507 at 1575.932 kb on - strand, within MPMX20_01507 at 1575.978 kb on - strand, within MPMX20_01507 at 1576.023 kb on + strand, within MPMX20_01507 at 1576.031 kb on - strand, within MPMX20_01507 at 1576.041 kb on - strand, within MPMX20_01507 at 1576.060 kb on + strand, within MPMX20_01507 at 1576.060 kb on + strand, within MPMX20_01507 at 1576.060 kb on + strand, within MPMX20_01507 at 1576.068 kb on - strand, within MPMX20_01507 at 1576.068 kb on - strand, within MPMX20_01507 at 1576.068 kb on - strand, within MPMX20_01507 at 1576.105 kb on - strand, within MPMX20_01507 at 1576.157 kb on + strand at 1576.170 kb on - strand at 1576.195 kb on + strand at 1576.195 kb on + strand at 1576.195 kb on + strand at 1576.195 kb on + strand at 1576.203 kb on - strand at 1576.203 kb on - strand at 1576.203 kb on - strand at 1576.203 kb on - strand at 1576.215 kb on + strand at 1576.215 kb on + strand at 1576.215 kb on + strand at 1576.215 kb on + strand at 1576.223 kb on - strand at 1576.237 kb on - strand at 1576.513 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.567 kb on + strand, within MPMX20_01508 at 1576.589 kb on + strand, within MPMX20_01508 at 1576.647 kb on + strand, within MPMX20_01508 at 1576.655 kb on - strand, within MPMX20_01508 at 1576.676 kb on + strand, within MPMX20_01508 at 1576.681 kb on + strand, within MPMX20_01508 at 1576.681 kb on + strand, within MPMX20_01508 at 1576.689 kb on - strand, within MPMX20_01508 at 1576.689 kb on - strand, within MPMX20_01508 at 1576.701 kb on - strand, within MPMX20_01508 at 1576.720 kb on + strand, within MPMX20_01508 at 1576.782 kb on + strand, within MPMX20_01508 at 1576.817 kb on - strand, within MPMX20_01508 at 1576.893 kb on + strand, within MPMX20_01508 at 1576.903 kb on + strand at 1576.940 kb on - strand at 1577.015 kb on - strand at 1577.022 kb on - strand at 1577.022 kb on - strand at 1577.022 kb on - strand at 1577.072 kb on + strand at 1577.072 kb on + strand at 1577.080 kb on - strand at 1577.087 kb on + strand, within MPMX20_01509 at 1577.093 kb on - strand, within MPMX20_01509 at 1577.100 kb on - strand, within MPMX20_01509 at 1577.124 kb on - strand, within MPMX20_01509 at 1577.130 kb on - strand, within MPMX20_01509 at 1577.194 kb on - strand, within MPMX20_01509 at 1577.206 kb on + strand, within MPMX20_01509 at 1577.253 kb on + strand, within MPMX20_01509 at 1577.253 kb on + strand, within MPMX20_01509 at 1577.253 kb on + strand, within MPMX20_01509 at 1577.253 kb on + strand, within MPMX20_01509 at 1577.323 kb on + strand, within MPMX20_01509 at 1577.405 kb on + strand at 1577.413 kb on - strand at 1577.413 kb on - strand at 1577.423 kb on - strand at 1577.457 kb on + strand, within MPMX20_01510 at 1577.472 kb on + strand, within MPMX20_01510 at 1577.505 kb on - strand, within MPMX20_01510 at 1577.532 kb on + strand, within MPMX20_01510 at 1577.592 kb on - strand, within MPMX20_01510 at 1577.640 kb on + strand, within MPMX20_01510 at 1577.727 kb on - strand, within MPMX20_01510 at 1577.767 kb on + strand, within MPMX20_01510 at 1577.777 kb on + strand, within MPMX20_01510 at 1577.785 kb on - strand, within MPMX20_01510 at 1577.885 kb on + strand, within MPMX20_01510 at 1577.893 kb on - strand, within MPMX20_01510 at 1577.893 kb on - strand, within MPMX20_01510 at 1577.912 kb on + strand, within MPMX20_01510 at 1577.933 kb on + strand, within MPMX20_01510 at 1577.951 kb on + strand, within MPMX20_01510 at 1577.951 kb on + strand, within MPMX20_01510
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038 remove 1,575,474 - -1.0 1,575,538 - -1.4 1,575,538 - +0.5 1,575,777 + MPMX20_01507 0.41 -0.5 1,575,785 - MPMX20_01507 0.42 -0.3 1,575,810 + MPMX20_01507 0.45 +0.9 1,575,818 - MPMX20_01507 0.47 -1.3 1,575,818 - MPMX20_01507 0.47 -0.6 1,575,818 - MPMX20_01507 0.47 -1.5 1,575,825 + MPMX20_01507 0.47 -0.9 1,575,922 - MPMX20_01507 0.61 -0.6 1,575,922 - MPMX20_01507 0.61 -0.7 1,575,922 - MPMX20_01507 0.61 +1.3 1,575,932 - MPMX20_01507 0.62 -0.1 1,575,978 - MPMX20_01507 0.68 -0.1 1,576,023 + MPMX20_01507 0.75 -0.6 1,576,031 - MPMX20_01507 0.76 -1.4 1,576,041 - MPMX20_01507 0.77 -0.0 1,576,060 + MPMX20_01507 0.80 -0.9 1,576,060 + MPMX20_01507 0.80 -1.2 1,576,060 + MPMX20_01507 0.80 -1.4 1,576,068 - MPMX20_01507 0.81 -0.5 1,576,068 - MPMX20_01507 0.81 -0.5 1,576,068 - MPMX20_01507 0.81 -0.0 1,576,105 - MPMX20_01507 0.86 +1.4 1,576,157 + +0.7 1,576,170 - +0.2 1,576,195 + -0.6 1,576,195 + -1.8 1,576,195 + -1.7 1,576,195 + +2.0 1,576,203 - -1.2 1,576,203 - -0.5 1,576,203 - +1.6 1,576,203 - +1.0 1,576,215 + -0.1 1,576,215 + +0.1 1,576,215 + +1.7 1,576,215 + -0.7 1,576,223 - -0.6 1,576,237 - +0.1 1,576,513 + MPMX20_01508 0.15 +0.2 1,576,518 + MPMX20_01508 0.16 -0.2 1,576,518 + MPMX20_01508 0.16 +0.2 1,576,518 + MPMX20_01508 0.16 +0.8 1,576,518 + MPMX20_01508 0.16 -0.2 1,576,567 + MPMX20_01508 0.26 -1.1 1,576,589 + MPMX20_01508 0.30 -1.0 1,576,647 + MPMX20_01508 0.41 -0.8 1,576,655 - MPMX20_01508 0.43 -0.4 1,576,676 + MPMX20_01508 0.47 -1.3 1,576,681 + MPMX20_01508 0.48 -0.0 1,576,681 + MPMX20_01508 0.48 +0.3 1,576,689 - MPMX20_01508 0.49 +1.0 1,576,689 - MPMX20_01508 0.49 -1.3 1,576,701 - MPMX20_01508 0.51 -0.4 1,576,720 + MPMX20_01508 0.55 +0.1 1,576,782 + MPMX20_01508 0.67 -1.6 1,576,817 - MPMX20_01508 0.74 -1.9 1,576,893 + MPMX20_01508 0.88 -0.7 1,576,903 + +1.0 1,576,940 - +1.4 1,577,015 - +2.2 1,577,022 - -0.9 1,577,022 - +0.1 1,577,022 - -0.5 1,577,072 + -0.5 1,577,072 + +0.4 1,577,080 - +0.9 1,577,087 + MPMX20_01509 0.11 -0.0 1,577,093 - MPMX20_01509 0.13 -0.7 1,577,100 - MPMX20_01509 0.15 -0.8 1,577,124 - MPMX20_01509 0.23 +0.1 1,577,130 - MPMX20_01509 0.25 +0.2 1,577,194 - MPMX20_01509 0.44 +3.3 1,577,206 + MPMX20_01509 0.48 -0.4 1,577,253 + MPMX20_01509 0.63 +0.0 1,577,253 + MPMX20_01509 0.63 +1.1 1,577,253 + MPMX20_01509 0.63 +0.3 1,577,253 + MPMX20_01509 0.63 +0.5 1,577,323 + MPMX20_01509 0.84 +0.9 1,577,405 + -1.5 1,577,413 - -0.8 1,577,413 - -0.6 1,577,423 - -0.1 1,577,457 + MPMX20_01510 0.10 -0.3 1,577,472 + MPMX20_01510 0.12 -0.6 1,577,505 - MPMX20_01510 0.16 -1.2 1,577,532 + MPMX20_01510 0.19 -0.4 1,577,592 - MPMX20_01510 0.27 -0.4 1,577,640 + MPMX20_01510 0.32 +0.2 1,577,727 - MPMX20_01510 0.43 -0.8 1,577,767 + MPMX20_01510 0.48 -0.9 1,577,777 + MPMX20_01510 0.49 -0.0 1,577,785 - MPMX20_01510 0.50 +0.6 1,577,885 + MPMX20_01510 0.62 -0.6 1,577,893 - MPMX20_01510 0.63 -0.1 1,577,893 - MPMX20_01510 0.63 -0.6 1,577,912 + MPMX20_01510 0.65 -1.0 1,577,933 + MPMX20_01510 0.68 -0.8 1,577,951 + MPMX20_01510 0.70 +0.6 1,577,951 + MPMX20_01510 0.70 -2.4
Or see this region's nucleotide sequence