Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01508

Experiment: M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01506 and MPMX20_01507 are separated by 20 nucleotidesMPMX20_01507 and MPMX20_01508 are separated by 226 nucleotidesMPMX20_01508 and MPMX20_01509 are separated by 97 nucleotidesMPMX20_01509 and MPMX20_01510 overlap by 4 nucleotides MPMX20_01506: MPMX20_01506 - Putative ABC transporter arginine-binding protein 2, at 1,574,727 to 1,575,458 _01506 MPMX20_01507: MPMX20_01507 - Arginine transport ATP-binding protein ArtP, at 1,575,479 to 1,576,207 _01507 MPMX20_01508: MPMX20_01508 - putative lipoprotein YbjP, at 1,576,434 to 1,576,952 _01508 MPMX20_01509: MPMX20_01509 - hypothetical protein, at 1,577,050 to 1,577,373 _01509 MPMX20_01510: MPMX20_01510 - N-acetylmuramoyl-L-alanine amidase AmiD, at 1,577,370 to 1,578,200 _01510 Position (kb) 1576 1577Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1575.474 kb on - strandat 1575.538 kb on - strandat 1575.538 kb on - strandat 1575.777 kb on + strand, within MPMX20_01507at 1575.785 kb on - strand, within MPMX20_01507at 1575.810 kb on + strand, within MPMX20_01507at 1575.818 kb on - strand, within MPMX20_01507at 1575.818 kb on - strand, within MPMX20_01507at 1575.818 kb on - strand, within MPMX20_01507at 1575.825 kb on + strand, within MPMX20_01507at 1575.922 kb on - strand, within MPMX20_01507at 1575.922 kb on - strand, within MPMX20_01507at 1575.922 kb on - strand, within MPMX20_01507at 1575.932 kb on - strand, within MPMX20_01507at 1575.978 kb on - strand, within MPMX20_01507at 1576.023 kb on + strand, within MPMX20_01507at 1576.031 kb on - strand, within MPMX20_01507at 1576.041 kb on - strand, within MPMX20_01507at 1576.060 kb on + strand, within MPMX20_01507at 1576.060 kb on + strand, within MPMX20_01507at 1576.060 kb on + strand, within MPMX20_01507at 1576.068 kb on - strand, within MPMX20_01507at 1576.068 kb on - strand, within MPMX20_01507at 1576.068 kb on - strand, within MPMX20_01507at 1576.105 kb on - strand, within MPMX20_01507at 1576.157 kb on + strandat 1576.170 kb on - strandat 1576.195 kb on + strandat 1576.195 kb on + strandat 1576.195 kb on + strandat 1576.195 kb on + strandat 1576.203 kb on - strandat 1576.203 kb on - strandat 1576.203 kb on - strandat 1576.203 kb on - strandat 1576.215 kb on + strandat 1576.215 kb on + strandat 1576.215 kb on + strandat 1576.215 kb on + strandat 1576.223 kb on - strandat 1576.237 kb on - strandat 1576.513 kb on + strand, within MPMX20_01508at 1576.518 kb on + strand, within MPMX20_01508at 1576.518 kb on + strand, within MPMX20_01508at 1576.518 kb on + strand, within MPMX20_01508at 1576.518 kb on + strand, within MPMX20_01508at 1576.567 kb on + strand, within MPMX20_01508at 1576.589 kb on + strand, within MPMX20_01508at 1576.647 kb on + strand, within MPMX20_01508at 1576.655 kb on - strand, within MPMX20_01508at 1576.676 kb on + strand, within MPMX20_01508at 1576.681 kb on + strand, within MPMX20_01508at 1576.681 kb on + strand, within MPMX20_01508at 1576.689 kb on - strand, within MPMX20_01508at 1576.689 kb on - strand, within MPMX20_01508at 1576.701 kb on - strand, within MPMX20_01508at 1576.720 kb on + strand, within MPMX20_01508at 1576.782 kb on + strand, within MPMX20_01508at 1576.817 kb on - strand, within MPMX20_01508at 1576.893 kb on + strand, within MPMX20_01508at 1576.903 kb on + strandat 1576.940 kb on - strandat 1577.015 kb on - strandat 1577.022 kb on - strandat 1577.022 kb on - strandat 1577.022 kb on - strandat 1577.072 kb on + strandat 1577.072 kb on + strandat 1577.080 kb on - strandat 1577.087 kb on + strand, within MPMX20_01509at 1577.093 kb on - strand, within MPMX20_01509at 1577.100 kb on - strand, within MPMX20_01509at 1577.124 kb on - strand, within MPMX20_01509at 1577.130 kb on - strand, within MPMX20_01509at 1577.194 kb on - strand, within MPMX20_01509at 1577.206 kb on + strand, within MPMX20_01509at 1577.253 kb on + strand, within MPMX20_01509at 1577.253 kb on + strand, within MPMX20_01509at 1577.253 kb on + strand, within MPMX20_01509at 1577.253 kb on + strand, within MPMX20_01509at 1577.323 kb on + strand, within MPMX20_01509at 1577.405 kb on + strandat 1577.413 kb on - strandat 1577.413 kb on - strandat 1577.423 kb on - strandat 1577.457 kb on + strand, within MPMX20_01510at 1577.472 kb on + strand, within MPMX20_01510at 1577.505 kb on - strand, within MPMX20_01510at 1577.532 kb on + strand, within MPMX20_01510at 1577.592 kb on - strand, within MPMX20_01510at 1577.640 kb on + strand, within MPMX20_01510at 1577.727 kb on - strand, within MPMX20_01510at 1577.767 kb on + strand, within MPMX20_01510at 1577.777 kb on + strand, within MPMX20_01510at 1577.785 kb on - strand, within MPMX20_01510at 1577.885 kb on + strand, within MPMX20_01510at 1577.893 kb on - strand, within MPMX20_01510at 1577.893 kb on - strand, within MPMX20_01510at 1577.912 kb on + strand, within MPMX20_01510at 1577.933 kb on + strand, within MPMX20_01510at 1577.951 kb on + strand, within MPMX20_01510at 1577.951 kb on + strand, within MPMX20_01510

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038
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1,575,474 - -1.0
1,575,538 - -1.4
1,575,538 - +0.5
1,575,777 + MPMX20_01507 0.41 -0.5
1,575,785 - MPMX20_01507 0.42 -0.3
1,575,810 + MPMX20_01507 0.45 +0.9
1,575,818 - MPMX20_01507 0.47 -1.3
1,575,818 - MPMX20_01507 0.47 -0.6
1,575,818 - MPMX20_01507 0.47 -1.5
1,575,825 + MPMX20_01507 0.47 -0.9
1,575,922 - MPMX20_01507 0.61 -0.6
1,575,922 - MPMX20_01507 0.61 -0.7
1,575,922 - MPMX20_01507 0.61 +1.3
1,575,932 - MPMX20_01507 0.62 -0.1
1,575,978 - MPMX20_01507 0.68 -0.1
1,576,023 + MPMX20_01507 0.75 -0.6
1,576,031 - MPMX20_01507 0.76 -1.4
1,576,041 - MPMX20_01507 0.77 -0.0
1,576,060 + MPMX20_01507 0.80 -0.9
1,576,060 + MPMX20_01507 0.80 -1.2
1,576,060 + MPMX20_01507 0.80 -1.4
1,576,068 - MPMX20_01507 0.81 -0.5
1,576,068 - MPMX20_01507 0.81 -0.5
1,576,068 - MPMX20_01507 0.81 -0.0
1,576,105 - MPMX20_01507 0.86 +1.4
1,576,157 + +0.7
1,576,170 - +0.2
1,576,195 + -0.6
1,576,195 + -1.8
1,576,195 + -1.7
1,576,195 + +2.0
1,576,203 - -1.2
1,576,203 - -0.5
1,576,203 - +1.6
1,576,203 - +1.0
1,576,215 + -0.1
1,576,215 + +0.1
1,576,215 + +1.7
1,576,215 + -0.7
1,576,223 - -0.6
1,576,237 - +0.1
1,576,513 + MPMX20_01508 0.15 +0.2
1,576,518 + MPMX20_01508 0.16 -0.2
1,576,518 + MPMX20_01508 0.16 +0.2
1,576,518 + MPMX20_01508 0.16 +0.8
1,576,518 + MPMX20_01508 0.16 -0.2
1,576,567 + MPMX20_01508 0.26 -1.1
1,576,589 + MPMX20_01508 0.30 -1.0
1,576,647 + MPMX20_01508 0.41 -0.8
1,576,655 - MPMX20_01508 0.43 -0.4
1,576,676 + MPMX20_01508 0.47 -1.3
1,576,681 + MPMX20_01508 0.48 -0.0
1,576,681 + MPMX20_01508 0.48 +0.3
1,576,689 - MPMX20_01508 0.49 +1.0
1,576,689 - MPMX20_01508 0.49 -1.3
1,576,701 - MPMX20_01508 0.51 -0.4
1,576,720 + MPMX20_01508 0.55 +0.1
1,576,782 + MPMX20_01508 0.67 -1.6
1,576,817 - MPMX20_01508 0.74 -1.9
1,576,893 + MPMX20_01508 0.88 -0.7
1,576,903 + +1.0
1,576,940 - +1.4
1,577,015 - +2.2
1,577,022 - -0.9
1,577,022 - +0.1
1,577,022 - -0.5
1,577,072 + -0.5
1,577,072 + +0.4
1,577,080 - +0.9
1,577,087 + MPMX20_01509 0.11 -0.0
1,577,093 - MPMX20_01509 0.13 -0.7
1,577,100 - MPMX20_01509 0.15 -0.8
1,577,124 - MPMX20_01509 0.23 +0.1
1,577,130 - MPMX20_01509 0.25 +0.2
1,577,194 - MPMX20_01509 0.44 +3.3
1,577,206 + MPMX20_01509 0.48 -0.4
1,577,253 + MPMX20_01509 0.63 +0.0
1,577,253 + MPMX20_01509 0.63 +1.1
1,577,253 + MPMX20_01509 0.63 +0.3
1,577,253 + MPMX20_01509 0.63 +0.5
1,577,323 + MPMX20_01509 0.84 +0.9
1,577,405 + -1.5
1,577,413 - -0.8
1,577,413 - -0.6
1,577,423 - -0.1
1,577,457 + MPMX20_01510 0.10 -0.3
1,577,472 + MPMX20_01510 0.12 -0.6
1,577,505 - MPMX20_01510 0.16 -1.2
1,577,532 + MPMX20_01510 0.19 -0.4
1,577,592 - MPMX20_01510 0.27 -0.4
1,577,640 + MPMX20_01510 0.32 +0.2
1,577,727 - MPMX20_01510 0.43 -0.8
1,577,767 + MPMX20_01510 0.48 -0.9
1,577,777 + MPMX20_01510 0.49 -0.0
1,577,785 - MPMX20_01510 0.50 +0.6
1,577,885 + MPMX20_01510 0.62 -0.6
1,577,893 - MPMX20_01510 0.63 -0.1
1,577,893 - MPMX20_01510 0.63 -0.6
1,577,912 + MPMX20_01510 0.65 -1.0
1,577,933 + MPMX20_01510 0.68 -0.8
1,577,951 + MPMX20_01510 0.70 +0.6
1,577,951 + MPMX20_01510 0.70 -2.4

Or see this region's nucleotide sequence