Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02680 and MPMX20_02681 are separated by 28 nucleotides MPMX20_02681 and MPMX20_02682 are separated by 23 nucleotides
MPMX20_02680: MPMX20_02680 - hypothetical protein, at 2,829,922 to 2,831,265
_02680
MPMX20_02681: MPMX20_02681 - hypothetical protein, at 2,831,294 to 2,831,797
_02681
MPMX20_02682: MPMX20_02682 - hypothetical protein, at 2,831,821 to 2,832,315
_02682
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 2830.867 kb on + strand, within MPMX20_02680 at 2831.064 kb on + strand, within MPMX20_02680 at 2831.072 kb on - strand, within MPMX20_02680 at 2831.072 kb on - strand, within MPMX20_02680 at 2831.077 kb on + strand, within MPMX20_02680 at 2831.082 kb on + strand, within MPMX20_02680 at 2831.085 kb on - strand, within MPMX20_02680 at 2831.085 kb on - strand, within MPMX20_02680 at 2831.087 kb on + strand, within MPMX20_02680 at 2831.093 kb on + strand, within MPMX20_02680 at 2831.142 kb on + strand at 2831.142 kb on + strand at 2831.162 kb on - strand at 2831.177 kb on + strand at 2831.185 kb on - strand at 2831.316 kb on - strand at 2831.339 kb on + strand at 2831.339 kb on + strand at 2831.339 kb on + strand at 2831.400 kb on + strand, within MPMX20_02681 at 2831.408 kb on - strand, within MPMX20_02681 at 2831.478 kb on + strand, within MPMX20_02681 at 2831.483 kb on + strand, within MPMX20_02681 at 2831.483 kb on + strand, within MPMX20_02681 at 2831.486 kb on - strand, within MPMX20_02681 at 2831.491 kb on - strand, within MPMX20_02681 at 2831.558 kb on + strand, within MPMX20_02681 at 2831.594 kb on - strand, within MPMX20_02681 at 2831.594 kb on - strand, within MPMX20_02681 at 2831.676 kb on + strand, within MPMX20_02681 at 2831.676 kb on + strand, within MPMX20_02681 at 2831.684 kb on - strand, within MPMX20_02681 at 2831.880 kb on + strand, within MPMX20_02682 at 2831.880 kb on + strand, within MPMX20_02682 at 2831.880 kb on + strand, within MPMX20_02682 at 2831.888 kb on - strand, within MPMX20_02682 at 2831.888 kb on - strand, within MPMX20_02682 at 2831.888 kb on - strand, within MPMX20_02682 at 2831.888 kb on - strand, within MPMX20_02682 at 2831.939 kb on + strand, within MPMX20_02682 at 2831.954 kb on + strand, within MPMX20_02682 at 2831.962 kb on - strand, within MPMX20_02682 at 2831.971 kb on + strand, within MPMX20_02682 at 2831.971 kb on + strand, within MPMX20_02682 at 2831.971 kb on + strand, within MPMX20_02682 at 2831.971 kb on + strand, within MPMX20_02682 at 2831.979 kb on - strand, within MPMX20_02682 at 2831.981 kb on + strand, within MPMX20_02682 at 2832.020 kb on + strand, within MPMX20_02682 at 2832.026 kb on - strand, within MPMX20_02682 at 2832.028 kb on - strand, within MPMX20_02682 at 2832.043 kb on - strand, within MPMX20_02682 at 2832.048 kb on - strand, within MPMX20_02682 at 2832.072 kb on + strand, within MPMX20_02682 at 2832.077 kb on + strand, within MPMX20_02682 at 2832.077 kb on + strand, within MPMX20_02682 at 2832.084 kb on + strand, within MPMX20_02682 at 2832.084 kb on - strand, within MPMX20_02682 at 2832.151 kb on - strand, within MPMX20_02682 at 2832.153 kb on + strand, within MPMX20_02682 at 2832.153 kb on + strand, within MPMX20_02682 at 2832.153 kb on + strand, within MPMX20_02682 at 2832.161 kb on - strand, within MPMX20_02682 at 2832.168 kb on - strand, within MPMX20_02682 at 2832.187 kb on - strand, within MPMX20_02682 at 2832.189 kb on + strand, within MPMX20_02682 at 2832.203 kb on + strand, within MPMX20_02682 at 2832.208 kb on + strand, within MPMX20_02682 at 2832.216 kb on - strand, within MPMX20_02682 at 2832.217 kb on + strand, within MPMX20_02682 at 2832.233 kb on + strand, within MPMX20_02682 at 2832.233 kb on + strand, within MPMX20_02682 at 2832.238 kb on + strand, within MPMX20_02682 at 2832.245 kb on + strand, within MPMX20_02682 at 2832.246 kb on - strand, within MPMX20_02682 at 2832.257 kb on + strand, within MPMX20_02682 at 2832.263 kb on - strand, within MPMX20_02682 at 2832.263 kb on - strand, within MPMX20_02682 at 2832.290 kb on + strand at 2832.290 kb on + strand at 2832.290 kb on + strand at 2832.290 kb on + strand at 2832.306 kb on - strand at 2832.348 kb on + strand at 2832.348 kb on + strand at 2832.355 kb on + strand at 2832.371 kb on - strand at 2832.379 kb on - strand at 2832.382 kb on - strand at 2832.431 kb on - strand at 2832.431 kb on - strand at 2832.444 kb on + strand at 2832.444 kb on + strand at 2832.444 kb on + strand at 2832.449 kb on + strand at 2832.452 kb on - strand at 2832.452 kb on - strand at 2832.463 kb on - strand at 2832.463 kb on - strand at 2832.497 kb on + strand at 2832.500 kb on + strand at 2832.505 kb on - strand at 2832.541 kb on - strand at 2832.541 kb on - strand at 2832.541 kb on - strand at 2832.541 kb on - strand at 2832.558 kb on + strand at 2832.566 kb on - strand at 2832.566 kb on - strand at 2832.691 kb on + strand at 2832.691 kb on + strand at 2832.691 kb on + strand at 2832.699 kb on - strand at 2832.699 kb on - strand at 2832.713 kb on + strand at 2832.713 kb on - strand at 2832.727 kb on + strand at 2832.732 kb on + strand at 2832.767 kb on + strand at 2832.805 kb on + strand at 2832.813 kb on - strand at 2832.938 kb on - strand at 2832.940 kb on + strand at 2832.940 kb on + strand at 2832.940 kb on + strand at 2832.948 kb on - strand at 2832.948 kb on - strand at 2832.989 kb on - strand at 2832.989 kb on - strand at 2832.989 kb on - strand at 2832.989 kb on - strand at 2832.989 kb on - strand at 2832.993 kb on + strand at 2832.993 kb on + strand at 2832.993 kb on - strand at 2832.993 kb on - strand at 2832.993 kb on - strand at 2832.999 kb on - strand at 2833.000 kb on + strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.001 kb on - strand at 2833.005 kb on + strand at 2833.005 kb on + strand at 2833.005 kb on + strand at 2833.005 kb on + strand at 2833.008 kb on - strand at 2833.012 kb on - strand at 2833.013 kb on - strand at 2833.013 kb on - strand at 2833.013 kb on - strand at 2833.013 kb on - strand at 2833.018 kb on - strand at 2833.018 kb on - strand at 2833.018 kb on - strand at 2833.023 kb on - strand at 2833.025 kb on - strand at 2833.025 kb on - strand at 2833.025 kb on - strand at 2833.028 kb on - strand at 2833.051 kb on + strand at 2833.051 kb on + strand at 2833.051 kb on - strand at 2833.059 kb on - strand at 2833.059 kb on - strand at 2833.059 kb on - strand at 2833.059 kb on - strand at 2833.059 kb on - strand at 2833.066 kb on + strand at 2833.073 kb on + strand at 2833.073 kb on + strand at 2833.073 kb on + strand at 2833.073 kb on + strand at 2833.077 kb on + strand at 2833.081 kb on - strand at 2833.081 kb on - strand at 2833.081 kb on - strand at 2833.081 kb on - strand at 2833.081 kb on - strand at 2833.081 kb on - strand at 2833.085 kb on + strand at 2833.085 kb on + strand at 2833.085 kb on + strand at 2833.085 kb on - strand at 2833.093 kb on - strand at 2833.093 kb on - strand at 2833.093 kb on - strand at 2833.297 kb on - strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.304 kb on + strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand at 2833.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 2,830,867 + MPMX20_02680 0.70 -1.9 2,831,064 + MPMX20_02680 0.85 -0.2 2,831,072 - MPMX20_02680 0.86 -1.3 2,831,072 - MPMX20_02680 0.86 -0.4 2,831,077 + MPMX20_02680 0.86 -2.3 2,831,082 + MPMX20_02680 0.86 +0.2 2,831,085 - MPMX20_02680 0.87 +1.6 2,831,085 - MPMX20_02680 0.87 -0.5 2,831,087 + MPMX20_02680 0.87 +0.8 2,831,093 + MPMX20_02680 0.87 -2.2 2,831,142 + -1.8 2,831,142 + -1.3 2,831,162 - -2.4 2,831,177 + +0.2 2,831,185 - -2.4 2,831,316 - +2.4 2,831,339 + -1.0 2,831,339 + +2.3 2,831,339 + +0.8 2,831,400 + MPMX20_02681 0.21 -1.2 2,831,408 - MPMX20_02681 0.23 -2.6 2,831,478 + MPMX20_02681 0.37 -1.4 2,831,483 + MPMX20_02681 0.38 -0.6 2,831,483 + MPMX20_02681 0.38 -1.4 2,831,486 - MPMX20_02681 0.38 +1.7 2,831,491 - MPMX20_02681 0.39 +0.9 2,831,558 + MPMX20_02681 0.52 -1.6 2,831,594 - MPMX20_02681 0.60 -1.3 2,831,594 - MPMX20_02681 0.60 -0.1 2,831,676 + MPMX20_02681 0.76 +1.2 2,831,676 + MPMX20_02681 0.76 +1.8 2,831,684 - MPMX20_02681 0.77 -0.7 2,831,880 + MPMX20_02682 0.12 -0.7 2,831,880 + MPMX20_02682 0.12 +4.1 2,831,880 + MPMX20_02682 0.12 -0.4 2,831,888 - MPMX20_02682 0.14 +4.6 2,831,888 - MPMX20_02682 0.14 +1.4 2,831,888 - MPMX20_02682 0.14 +6.9 2,831,888 - MPMX20_02682 0.14 -2.4 2,831,939 + MPMX20_02682 0.24 -0.0 2,831,954 + MPMX20_02682 0.27 +4.0 2,831,962 - MPMX20_02682 0.28 +2.6 2,831,971 + MPMX20_02682 0.30 +3.4 2,831,971 + MPMX20_02682 0.30 +5.1 2,831,971 + MPMX20_02682 0.30 +2.8 2,831,971 + MPMX20_02682 0.30 +0.3 2,831,979 - MPMX20_02682 0.32 +3.8 2,831,981 + MPMX20_02682 0.32 +1.8 2,832,020 + MPMX20_02682 0.40 +2.5 2,832,026 - MPMX20_02682 0.41 +2.4 2,832,028 - MPMX20_02682 0.42 +3.9 2,832,043 - MPMX20_02682 0.45 +3.2 2,832,048 - MPMX20_02682 0.46 -0.3 2,832,072 + MPMX20_02682 0.51 +2.0 2,832,077 + MPMX20_02682 0.52 -0.5 2,832,077 + MPMX20_02682 0.52 +2.0 2,832,084 + MPMX20_02682 0.53 +2.1 2,832,084 - MPMX20_02682 0.53 -2.1 2,832,151 - MPMX20_02682 0.67 +2.3 2,832,153 + MPMX20_02682 0.67 +1.8 2,832,153 + MPMX20_02682 0.67 +2.5 2,832,153 + MPMX20_02682 0.67 +5.3 2,832,161 - MPMX20_02682 0.69 +1.9 2,832,168 - MPMX20_02682 0.70 -0.9 2,832,187 - MPMX20_02682 0.74 -1.9 2,832,189 + MPMX20_02682 0.74 +2.0 2,832,203 + MPMX20_02682 0.77 -0.7 2,832,208 + MPMX20_02682 0.78 +4.8 2,832,216 - MPMX20_02682 0.80 +1.8 2,832,217 + MPMX20_02682 0.80 -0.3 2,832,233 + MPMX20_02682 0.83 -2.3 2,832,233 + MPMX20_02682 0.83 +0.8 2,832,238 + MPMX20_02682 0.84 -0.0 2,832,245 + MPMX20_02682 0.86 +1.7 2,832,246 - MPMX20_02682 0.86 +1.3 2,832,257 + MPMX20_02682 0.88 -1.2 2,832,263 - MPMX20_02682 0.89 -0.9 2,832,263 - MPMX20_02682 0.89 +4.2 2,832,290 + +4.4 2,832,290 + +6.2 2,832,290 + +2.8 2,832,290 + -0.4 2,832,306 - +2.6 2,832,348 + -1.6 2,832,348 + +1.1 2,832,355 + -0.1 2,832,371 - -2.2 2,832,379 - -1.2 2,832,382 - -1.7 2,832,431 - +0.6 2,832,431 - +0.5 2,832,444 + -2.0 2,832,444 + +2.1 2,832,444 + -2.4 2,832,449 + +1.3 2,832,452 - +0.1 2,832,452 - +2.3 2,832,463 - -1.1 2,832,463 - +3.2 2,832,497 + +2.7 2,832,500 + +1.6 2,832,505 - -0.2 2,832,541 - -1.2 2,832,541 - +1.3 2,832,541 - -2.3 2,832,541 - +0.8 2,832,558 + +1.6 2,832,566 - -2.1 2,832,566 - -0.4 2,832,691 + -0.7 2,832,691 + -2.6 2,832,691 + -0.2 2,832,699 - -2.5 2,832,699 - +1.1 2,832,713 + +1.6 2,832,713 - +0.1 2,832,727 + -0.6 2,832,732 + +0.4 2,832,767 + -0.9 2,832,805 + -0.5 2,832,813 - -0.2 2,832,938 - +0.1 2,832,940 + +2.6 2,832,940 + +1.6 2,832,940 + +1.0 2,832,948 - +1.0 2,832,948 - -1.7 2,832,989 - +0.7 2,832,989 - -1.8 2,832,989 - +1.6 2,832,989 - -3.1 2,832,989 - -0.0 2,832,993 + +0.6 2,832,993 + +1.6 2,832,993 - -1.5 2,832,993 - -0.7 2,832,993 - -2.2 2,832,999 - +1.6 2,833,000 + +0.5 2,833,001 - -1.0 2,833,001 - +0.5 2,833,001 - -0.5 2,833,001 - +2.3 2,833,001 - -1.8 2,833,001 - +1.5 2,833,001 - +0.3 2,833,001 - +1.0 2,833,001 - -1.0 2,833,001 - +0.2 2,833,001 - +3.6 2,833,001 - -0.9 2,833,005 + -0.4 2,833,005 + -0.3 2,833,005 + +1.1 2,833,005 + -1.3 2,833,008 - +1.6 2,833,012 - +0.8 2,833,013 - -1.9 2,833,013 - -3.0 2,833,013 - -0.7 2,833,013 - +0.7 2,833,018 - -1.5 2,833,018 - -0.4 2,833,018 - -0.0 2,833,023 - +0.9 2,833,025 - -0.1 2,833,025 - -1.7 2,833,025 - -0.5 2,833,028 - +1.0 2,833,051 + -0.6 2,833,051 + +1.3 2,833,051 - -0.3 2,833,059 - +1.0 2,833,059 - -0.3 2,833,059 - +2.6 2,833,059 - -0.2 2,833,059 - -0.7 2,833,066 + -0.7 2,833,073 + +2.6 2,833,073 + +1.4 2,833,073 + +1.6 2,833,073 + +0.2 2,833,077 + +1.2 2,833,081 - -0.0 2,833,081 - +0.1 2,833,081 - +1.3 2,833,081 - -3.0 2,833,081 - +0.1 2,833,081 - +0.4 2,833,085 + +0.6 2,833,085 + -0.9 2,833,085 + +0.1 2,833,085 - +3.2 2,833,093 - +1.3 2,833,093 - +1.3 2,833,093 - +0.1 2,833,297 - -1.1 2,833,304 + +2.6 2,833,304 + -1.4 2,833,304 + +0.8 2,833,304 + -0.7 2,833,304 + -1.7 2,833,304 + -0.1 2,833,304 + +0.5 2,833,304 + -0.2 2,833,304 + -0.4 2,833,304 + +1.8 2,833,304 + -2.1 2,833,304 + -0.7 2,833,304 + +0.9 2,833,304 + +0.2 2,833,304 + -1.6 2,833,304 + +3.8 2,833,304 + -1.8 2,833,304 + -1.9 2,833,304 + +4.2 2,833,304 + -0.2 2,833,304 + -1.4 2,833,312 - -0.6 2,833,312 - -0.5 2,833,312 - -0.9 2,833,312 - -1.5 2,833,312 - +1.7 2,833,312 - +0.6 2,833,312 - +0.2 2,833,312 - +0.6 2,833,312 - -0.8 2,833,312 - +1.6 2,833,312 - +1.1 2,833,312 - -1.3 2,833,312 - -0.7 2,833,312 - -0.3 2,833,312 - +0.1 2,833,312 - -0.2
Or see this region's nucleotide sequence