Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02980 and MPMX20_02981 are separated by 129 nucleotides MPMX20_02981 and MPMX20_02982 are separated by 207 nucleotides MPMX20_02982 and MPMX20_02983 are separated by 96 nucleotides
MPMX20_02980: MPMX20_02980 - Glycine cleavage system transcriptional activator, at 3,113,693 to 3,114,463
_02980
MPMX20_02981: MPMX20_02981 - hypothetical protein, at 3,114,593 to 3,114,778
_02981
MPMX20_02982: MPMX20_02982 - HTH-type transcriptional regulator cbl, at 3,114,986 to 3,115,936
_02982
MPMX20_02983: MPMX20_02983 - HTH-type transcriptional regulator ArgP, at 3,116,033 to 3,116,950
_02983
Position (kb)
3114
3115
3116 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 3114.019 kb on + strand, within MPMX20_02980 at 3114.020 kb on - strand, within MPMX20_02980 at 3114.027 kb on - strand, within MPMX20_02980 at 3114.057 kb on - strand, within MPMX20_02980 at 3114.066 kb on + strand, within MPMX20_02980 at 3114.074 kb on - strand, within MPMX20_02980 at 3114.084 kb on + strand, within MPMX20_02980 at 3114.089 kb on + strand, within MPMX20_02980 at 3114.097 kb on - strand, within MPMX20_02980 at 3114.178 kb on + strand, within MPMX20_02980 at 3114.186 kb on - strand, within MPMX20_02980 at 3114.186 kb on - strand, within MPMX20_02980 at 3114.186 kb on - strand, within MPMX20_02980 at 3114.194 kb on - strand, within MPMX20_02980 at 3114.194 kb on - strand, within MPMX20_02980 at 3114.210 kb on - strand, within MPMX20_02980 at 3114.212 kb on - strand, within MPMX20_02980 at 3114.216 kb on - strand, within MPMX20_02980 at 3114.216 kb on - strand, within MPMX20_02980 at 3114.218 kb on + strand, within MPMX20_02980 at 3114.218 kb on + strand, within MPMX20_02980 at 3114.219 kb on + strand, within MPMX20_02980 at 3114.219 kb on + strand, within MPMX20_02980 at 3114.219 kb on + strand, within MPMX20_02980 at 3114.224 kb on + strand, within MPMX20_02980 at 3114.226 kb on - strand, within MPMX20_02980 at 3114.226 kb on - strand, within MPMX20_02980 at 3114.226 kb on - strand, within MPMX20_02980 at 3114.227 kb on - strand, within MPMX20_02980 at 3114.265 kb on - strand, within MPMX20_02980 at 3114.270 kb on - strand, within MPMX20_02980 at 3114.299 kb on - strand, within MPMX20_02980 at 3114.346 kb on - strand, within MPMX20_02980 at 3114.356 kb on - strand, within MPMX20_02980 at 3114.379 kb on - strand, within MPMX20_02980 at 3114.379 kb on - strand, within MPMX20_02980 at 3114.379 kb on - strand, within MPMX20_02980 at 3114.388 kb on + strand at 3114.388 kb on + strand at 3114.388 kb on + strand at 3114.396 kb on - strand at 3114.396 kb on - strand at 3114.396 kb on - strand at 3114.422 kb on - strand at 3114.427 kb on + strand at 3114.427 kb on + strand at 3114.427 kb on + strand at 3114.427 kb on + strand at 3114.427 kb on + strand at 3114.451 kb on + strand at 3114.451 kb on + strand at 3114.451 kb on + strand at 3114.451 kb on + strand at 3114.459 kb on - strand at 3114.485 kb on - strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.517 kb on + strand at 3114.527 kb on + strand at 3114.552 kb on + strand at 3114.552 kb on + strand at 3114.557 kb on + strand at 3114.557 kb on + strand at 3114.564 kb on + strand at 3114.564 kb on + strand at 3114.594 kb on + strand at 3114.596 kb on + strand at 3114.601 kb on + strand at 3114.610 kb on + strand at 3114.687 kb on + strand, within MPMX20_02981 at 3114.697 kb on + strand, within MPMX20_02981 at 3114.709 kb on + strand, within MPMX20_02981 at 3114.709 kb on + strand, within MPMX20_02981 at 3114.711 kb on + strand, within MPMX20_02981 at 3114.713 kb on + strand, within MPMX20_02981 at 3114.713 kb on + strand, within MPMX20_02981 at 3114.713 kb on + strand, within MPMX20_02981 at 3114.719 kb on + strand, within MPMX20_02981 at 3114.753 kb on + strand, within MPMX20_02981 at 3114.753 kb on + strand, within MPMX20_02981 at 3114.753 kb on + strand, within MPMX20_02981 at 3114.753 kb on + strand, within MPMX20_02981 at 3114.860 kb on - strand at 3114.862 kb on - strand at 3114.867 kb on - strand at 3114.867 kb on - strand at 3114.867 kb on - strand at 3114.867 kb on - strand at 3114.867 kb on - strand at 3114.867 kb on - strand at 3114.885 kb on - strand at 3114.885 kb on - strand at 3114.885 kb on - strand at 3114.935 kb on - strand at 3114.940 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.952 kb on - strand at 3114.954 kb on - strand at 3114.954 kb on - strand at 3114.975 kb on - strand at 3114.982 kb on - strand at 3114.982 kb on - strand at 3114.982 kb on - strand at 3114.983 kb on - strand at 3114.992 kb on - strand at 3114.992 kb on - strand at 3114.992 kb on - strand at 3115.020 kb on - strand at 3115.021 kb on - strand at 3115.025 kb on - strand at 3115.033 kb on - strand at 3115.035 kb on - strand at 3115.040 kb on - strand at 3115.040 kb on - strand at 3115.040 kb on - strand at 3115.040 kb on - strand at 3115.045 kb on - strand at 3115.050 kb on - strand at 3115.052 kb on - strand at 3115.067 kb on - strand at 3115.067 kb on - strand at 3115.067 kb on - strand at 3115.067 kb on - strand at 3115.067 kb on - strand at 3115.077 kb on - strand at 3115.092 kb on - strand, within MPMX20_02982 at 3115.097 kb on - strand, within MPMX20_02982 at 3115.112 kb on - strand, within MPMX20_02982 at 3115.113 kb on - strand, within MPMX20_02982 at 3115.119 kb on - strand, within MPMX20_02982 at 3115.120 kb on - strand, within MPMX20_02982 at 3115.125 kb on - strand, within MPMX20_02982 at 3115.131 kb on - strand, within MPMX20_02982 at 3115.131 kb on - strand, within MPMX20_02982 at 3115.155 kb on - strand, within MPMX20_02982 at 3115.169 kb on - strand, within MPMX20_02982 at 3115.173 kb on - strand, within MPMX20_02982 at 3115.191 kb on + strand, within MPMX20_02982 at 3115.191 kb on + strand, within MPMX20_02982 at 3115.199 kb on - strand, within MPMX20_02982 at 3115.199 kb on - strand, within MPMX20_02982 at 3115.252 kb on + strand, within MPMX20_02982 at 3115.252 kb on + strand, within MPMX20_02982 at 3115.260 kb on - strand, within MPMX20_02982 at 3115.261 kb on + strand, within MPMX20_02982 at 3115.293 kb on - strand, within MPMX20_02982 at 3115.307 kb on + strand, within MPMX20_02982 at 3115.342 kb on + strand, within MPMX20_02982 at 3115.383 kb on - strand, within MPMX20_02982 at 3115.421 kb on + strand, within MPMX20_02982 at 3115.468 kb on + strand, within MPMX20_02982 at 3115.476 kb on - strand, within MPMX20_02982 at 3115.545 kb on + strand, within MPMX20_02982 at 3115.545 kb on + strand, within MPMX20_02982 at 3115.550 kb on + strand, within MPMX20_02982 at 3115.550 kb on + strand, within MPMX20_02982 at 3115.551 kb on + strand, within MPMX20_02982 at 3115.558 kb on - strand, within MPMX20_02982 at 3115.569 kb on - strand, within MPMX20_02982 at 3115.569 kb on - strand, within MPMX20_02982 at 3115.596 kb on + strand, within MPMX20_02982 at 3115.596 kb on + strand, within MPMX20_02982 at 3115.604 kb on - strand, within MPMX20_02982 at 3115.604 kb on - strand, within MPMX20_02982 at 3115.624 kb on - strand, within MPMX20_02982 at 3115.631 kb on + strand, within MPMX20_02982 at 3115.639 kb on - strand, within MPMX20_02982 at 3115.639 kb on - strand, within MPMX20_02982 at 3115.644 kb on - strand, within MPMX20_02982 at 3115.667 kb on - strand, within MPMX20_02982 at 3115.743 kb on + strand, within MPMX20_02982 at 3115.832 kb on - strand, within MPMX20_02982 at 3115.854 kb on + strand at 3115.854 kb on + strand at 3115.882 kb on + strand at 3115.884 kb on - strand at 3115.888 kb on + strand at 3115.888 kb on + strand at 3115.888 kb on + strand at 3115.888 kb on + strand at 3115.890 kb on - strand at 3115.890 kb on - strand at 3115.890 kb on - strand at 3115.922 kb on - strand at 3115.932 kb on - strand at 3115.956 kb on + strand at 3115.978 kb on + strand at 3115.978 kb on + strand at 3116.086 kb on - strand at 3116.095 kb on - strand at 3116.098 kb on + strand at 3116.113 kb on + strand at 3116.121 kb on - strand at 3116.139 kb on + strand, within MPMX20_02983 at 3116.139 kb on + strand, within MPMX20_02983 at 3116.147 kb on - strand, within MPMX20_02983 at 3116.162 kb on + strand, within MPMX20_02983 at 3116.248 kb on + strand, within MPMX20_02983 at 3116.251 kb on - strand, within MPMX20_02983 at 3116.256 kb on - strand, within MPMX20_02983 at 3116.261 kb on + strand, within MPMX20_02983 at 3116.344 kb on - strand, within MPMX20_02983 at 3116.359 kb on - strand, within MPMX20_02983 at 3116.369 kb on - strand, within MPMX20_02983 at 3116.410 kb on + strand, within MPMX20_02983 at 3116.422 kb on + strand, within MPMX20_02983 at 3116.422 kb on + strand, within MPMX20_02983 at 3116.422 kb on + strand, within MPMX20_02983 at 3116.430 kb on - strand, within MPMX20_02983 at 3116.448 kb on + strand, within MPMX20_02983 at 3116.451 kb on - strand, within MPMX20_02983 at 3116.458 kb on - strand, within MPMX20_02983 at 3116.513 kb on - strand, within MPMX20_02983 at 3116.513 kb on - strand, within MPMX20_02983 at 3116.525 kb on - strand, within MPMX20_02983 at 3116.554 kb on + strand, within MPMX20_02983 at 3116.562 kb on - strand, within MPMX20_02983 at 3116.567 kb on + strand, within MPMX20_02983 at 3116.613 kb on + strand, within MPMX20_02983 at 3116.621 kb on - strand, within MPMX20_02983 at 3116.621 kb on - strand, within MPMX20_02983 at 3116.731 kb on + strand, within MPMX20_02983 at 3116.731 kb on + strand, within MPMX20_02983 at 3116.731 kb on + strand, within MPMX20_02983 at 3116.849 kb on - strand, within MPMX20_02983 at 3116.871 kb on + strand at 3116.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 3,114,019 + MPMX20_02980 0.42 +0.3 3,114,020 - MPMX20_02980 0.42 -0.1 3,114,027 - MPMX20_02980 0.43 -0.7 3,114,057 - MPMX20_02980 0.47 -0.8 3,114,066 + MPMX20_02980 0.48 +0.4 3,114,074 - MPMX20_02980 0.49 +0.5 3,114,084 + MPMX20_02980 0.51 +0.4 3,114,089 + MPMX20_02980 0.51 -0.6 3,114,097 - MPMX20_02980 0.52 -1.8 3,114,178 + MPMX20_02980 0.63 +0.3 3,114,186 - MPMX20_02980 0.64 +1.4 3,114,186 - MPMX20_02980 0.64 +0.1 3,114,186 - MPMX20_02980 0.64 -1.1 3,114,194 - MPMX20_02980 0.65 +0.2 3,114,194 - MPMX20_02980 0.65 +0.7 3,114,210 - MPMX20_02980 0.67 -0.3 3,114,212 - MPMX20_02980 0.67 +1.4 3,114,216 - MPMX20_02980 0.68 +0.8 3,114,216 - MPMX20_02980 0.68 -1.4 3,114,218 + MPMX20_02980 0.68 +1.5 3,114,218 + MPMX20_02980 0.68 +1.5 3,114,219 + MPMX20_02980 0.68 -1.4 3,114,219 + MPMX20_02980 0.68 -1.3 3,114,219 + MPMX20_02980 0.68 +0.8 3,114,224 + MPMX20_02980 0.69 -0.3 3,114,226 - MPMX20_02980 0.69 -0.8 3,114,226 - MPMX20_02980 0.69 -1.0 3,114,226 - MPMX20_02980 0.69 -0.6 3,114,227 - MPMX20_02980 0.69 +0.1 3,114,265 - MPMX20_02980 0.74 +1.1 3,114,270 - MPMX20_02980 0.75 -0.5 3,114,299 - MPMX20_02980 0.79 -0.7 3,114,346 - MPMX20_02980 0.85 +1.0 3,114,356 - MPMX20_02980 0.86 +4.3 3,114,379 - MPMX20_02980 0.89 +1.0 3,114,379 - MPMX20_02980 0.89 +0.4 3,114,379 - MPMX20_02980 0.89 +1.0 3,114,388 + +0.0 3,114,388 + +0.9 3,114,388 + +0.4 3,114,396 - +0.4 3,114,396 - -0.2 3,114,396 - +0.7 3,114,422 - -1.2 3,114,427 + +0.7 3,114,427 + -0.8 3,114,427 + +0.5 3,114,427 + +0.7 3,114,427 + +1.7 3,114,451 + +1.2 3,114,451 + -2.5 3,114,451 + +3.7 3,114,451 + +0.6 3,114,459 - +2.7 3,114,485 - +0.7 3,114,517 + -0.7 3,114,517 + -1.7 3,114,517 + -0.5 3,114,517 + -1.6 3,114,517 + -0.2 3,114,517 + +0.7 3,114,517 + -0.1 3,114,517 + -0.7 3,114,517 + +1.5 3,114,517 + -0.6 3,114,517 + -0.9 3,114,517 + -0.6 3,114,517 + -0.1 3,114,527 + -0.1 3,114,552 + -0.7 3,114,552 + -0.4 3,114,557 + -0.3 3,114,557 + -0.3 3,114,564 + -0.3 3,114,564 + +0.4 3,114,594 + +1.7 3,114,596 + +0.4 3,114,601 + -0.1 3,114,610 + +1.7 3,114,687 + MPMX20_02981 0.51 -0.3 3,114,697 + MPMX20_02981 0.56 -1.7 3,114,709 + MPMX20_02981 0.62 +0.0 3,114,709 + MPMX20_02981 0.62 -0.6 3,114,711 + MPMX20_02981 0.63 -1.5 3,114,713 + MPMX20_02981 0.65 +0.9 3,114,713 + MPMX20_02981 0.65 +0.7 3,114,713 + MPMX20_02981 0.65 +0.5 3,114,719 + MPMX20_02981 0.68 +0.7 3,114,753 + MPMX20_02981 0.86 -1.4 3,114,753 + MPMX20_02981 0.86 +1.7 3,114,753 + MPMX20_02981 0.86 +2.7 3,114,753 + MPMX20_02981 0.86 -0.4 3,114,860 - -0.5 3,114,862 - -1.7 3,114,867 - -2.3 3,114,867 - +1.1 3,114,867 - +1.7 3,114,867 - -0.7 3,114,867 - -0.9 3,114,867 - +0.1 3,114,885 - -0.6 3,114,885 - -0.8 3,114,885 - +2.1 3,114,935 - +1.7 3,114,940 - +2.3 3,114,952 - +1.0 3,114,952 - -0.7 3,114,952 - -0.1 3,114,952 - -0.5 3,114,952 - -0.5 3,114,952 - -0.4 3,114,952 - -1.6 3,114,952 - -0.7 3,114,952 - -1.7 3,114,954 - -0.4 3,114,954 - -0.6 3,114,975 - -0.9 3,114,982 - -2.3 3,114,982 - +1.7 3,114,982 - +0.6 3,114,983 - +1.7 3,114,992 - -0.3 3,114,992 - -0.2 3,114,992 - +2.7 3,115,020 - +0.1 3,115,021 - -0.2 3,115,025 - -3.1 3,115,033 - +0.1 3,115,035 - +1.7 3,115,040 - -1.1 3,115,040 - -2.0 3,115,040 - -0.2 3,115,040 - -0.4 3,115,045 - +0.4 3,115,050 - -0.7 3,115,052 - -0.1 3,115,067 - -0.4 3,115,067 - +2.2 3,115,067 - +0.1 3,115,067 - -0.0 3,115,067 - +0.1 3,115,077 - +10.5 3,115,092 - MPMX20_02982 0.11 +0.2 3,115,097 - MPMX20_02982 0.12 +0.8 3,115,112 - MPMX20_02982 0.13 +1.1 3,115,113 - MPMX20_02982 0.13 -0.3 3,115,119 - MPMX20_02982 0.14 +0.1 3,115,120 - MPMX20_02982 0.14 +0.4 3,115,125 - MPMX20_02982 0.15 +0.3 3,115,131 - MPMX20_02982 0.15 +1.0 3,115,131 - MPMX20_02982 0.15 -1.3 3,115,155 - MPMX20_02982 0.18 +3.4 3,115,169 - MPMX20_02982 0.19 +0.7 3,115,173 - MPMX20_02982 0.20 -1.2 3,115,191 + MPMX20_02982 0.22 +1.4 3,115,191 + MPMX20_02982 0.22 -1.3 3,115,199 - MPMX20_02982 0.22 +2.1 3,115,199 - MPMX20_02982 0.22 +0.1 3,115,252 + MPMX20_02982 0.28 +0.8 3,115,252 + MPMX20_02982 0.28 +3.3 3,115,260 - MPMX20_02982 0.29 +0.5 3,115,261 + MPMX20_02982 0.29 +0.5 3,115,293 - MPMX20_02982 0.32 +1.7 3,115,307 + MPMX20_02982 0.34 +0.4 3,115,342 + MPMX20_02982 0.37 -2.1 3,115,383 - MPMX20_02982 0.42 +1.7 3,115,421 + MPMX20_02982 0.46 +0.2 3,115,468 + MPMX20_02982 0.51 +0.4 3,115,476 - MPMX20_02982 0.52 -0.3 3,115,545 + MPMX20_02982 0.59 +2.1 3,115,545 + MPMX20_02982 0.59 +0.4 3,115,550 + MPMX20_02982 0.59 +1.4 3,115,550 + MPMX20_02982 0.59 -0.2 3,115,551 + MPMX20_02982 0.59 -0.7 3,115,558 - MPMX20_02982 0.60 +0.0 3,115,569 - MPMX20_02982 0.61 +0.5 3,115,569 - MPMX20_02982 0.61 -0.7 3,115,596 + MPMX20_02982 0.64 -1.0 3,115,596 + MPMX20_02982 0.64 -1.1 3,115,604 - MPMX20_02982 0.65 +1.7 3,115,604 - MPMX20_02982 0.65 +0.8 3,115,624 - MPMX20_02982 0.67 +0.1 3,115,631 + MPMX20_02982 0.68 -0.9 3,115,639 - MPMX20_02982 0.69 -0.5 3,115,639 - MPMX20_02982 0.69 +3.0 3,115,644 - MPMX20_02982 0.69 -0.4 3,115,667 - MPMX20_02982 0.72 -0.4 3,115,743 + MPMX20_02982 0.80 +0.9 3,115,832 - MPMX20_02982 0.89 +1.5 3,115,854 + +1.1 3,115,854 + -0.7 3,115,882 + -0.1 3,115,884 - -0.5 3,115,888 + +0.4 3,115,888 + -1.2 3,115,888 + -0.1 3,115,888 + +0.6 3,115,890 - -0.4 3,115,890 - +1.1 3,115,890 - +0.9 3,115,922 - +0.1 3,115,932 - -0.0 3,115,956 + -0.9 3,115,978 + -0.7 3,115,978 + +0.5 3,116,086 - +0.3 3,116,095 - +0.7 3,116,098 + +0.6 3,116,113 + +0.1 3,116,121 - +1.1 3,116,139 + MPMX20_02983 0.12 -0.1 3,116,139 + MPMX20_02983 0.12 -0.1 3,116,147 - MPMX20_02983 0.12 +0.5 3,116,162 + MPMX20_02983 0.14 +1.1 3,116,248 + MPMX20_02983 0.23 -1.5 3,116,251 - MPMX20_02983 0.24 +0.3 3,116,256 - MPMX20_02983 0.24 -0.4 3,116,261 + MPMX20_02983 0.25 -0.7 3,116,344 - MPMX20_02983 0.34 +2.7 3,116,359 - MPMX20_02983 0.36 +0.2 3,116,369 - MPMX20_02983 0.37 -0.9 3,116,410 + MPMX20_02983 0.41 -0.3 3,116,422 + MPMX20_02983 0.42 -1.9 3,116,422 + MPMX20_02983 0.42 -1.7 3,116,422 + MPMX20_02983 0.42 -1.7 3,116,430 - MPMX20_02983 0.43 +0.3 3,116,448 + MPMX20_02983 0.45 +0.1 3,116,451 - MPMX20_02983 0.46 -1.9 3,116,458 - MPMX20_02983 0.46 +1.4 3,116,513 - MPMX20_02983 0.52 -1.7 3,116,513 - MPMX20_02983 0.52 -0.4 3,116,525 - MPMX20_02983 0.54 -0.6 3,116,554 + MPMX20_02983 0.57 -0.2 3,116,562 - MPMX20_02983 0.58 +0.1 3,116,567 + MPMX20_02983 0.58 +0.1 3,116,613 + MPMX20_02983 0.63 -0.5 3,116,621 - MPMX20_02983 0.64 -1.6 3,116,621 - MPMX20_02983 0.64 -1.1 3,116,731 + MPMX20_02983 0.76 +0.2 3,116,731 + MPMX20_02983 0.76 -0.8 3,116,731 + MPMX20_02983 0.76 +0.4 3,116,849 - MPMX20_02983 0.89 -0.3 3,116,871 + +0.7 3,116,927 + -0.1
Or see this region's nucleotide sequence