Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01016 and MPMX20_01017 are separated by 203 nucleotides MPMX20_01017 and MPMX20_01018 are separated by 32 nucleotides MPMX20_01018 and MPMX20_01019 are separated by 149 nucleotides
MPMX20_01016: MPMX20_01016 - 2-dehydropantoate 2-reductase, at 1,068,790 to 1,069,701
_01016
MPMX20_01017: MPMX20_01017 - hypothetical protein, at 1,069,905 to 1,070,396
_01017
MPMX20_01018: MPMX20_01018 - Inner membrane transport protein YajR, at 1,070,429 to 1,071,790
_01018
MPMX20_01019: MPMX20_01019 - Protoheme IX farnesyltransferase, at 1,071,940 to 1,072,827
_01019
Position (kb)
1070
1071
1072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1069.472 kb on + strand, within MPMX20_01016 at 1069.484 kb on + strand, within MPMX20_01016 at 1069.560 kb on - strand, within MPMX20_01016 at 1069.589 kb on - strand, within MPMX20_01016 at 1069.597 kb on + strand, within MPMX20_01016 at 1069.605 kb on - strand, within MPMX20_01016 at 1069.605 kb on - strand, within MPMX20_01016 at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.618 kb on + strand at 1069.626 kb on + strand at 1069.626 kb on - strand at 1069.626 kb on - strand at 1069.626 kb on - strand at 1069.655 kb on + strand at 1069.663 kb on - strand at 1069.663 kb on - strand at 1069.673 kb on - strand at 1069.673 kb on - strand at 1069.679 kb on + strand at 1069.687 kb on - strand at 1069.744 kb on + strand at 1069.797 kb on + strand at 1069.801 kb on + strand at 1069.816 kb on + strand at 1069.854 kb on + strand at 1069.866 kb on + strand at 1069.874 kb on - strand at 1070.017 kb on + strand, within MPMX20_01017 at 1070.087 kb on + strand, within MPMX20_01017 at 1070.111 kb on + strand, within MPMX20_01017 at 1070.130 kb on - strand, within MPMX20_01017 at 1070.155 kb on + strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.213 kb on - strand, within MPMX20_01017 at 1070.258 kb on + strand, within MPMX20_01017 at 1070.503 kb on + strand at 1070.511 kb on - strand at 1070.801 kb on - strand, within MPMX20_01018 at 1070.847 kb on + strand, within MPMX20_01018 at 1070.847 kb on - strand, within MPMX20_01018 at 1071.065 kb on - strand, within MPMX20_01018 at 1071.182 kb on + strand, within MPMX20_01018 at 1071.182 kb on + strand, within MPMX20_01018 at 1071.190 kb on - strand, within MPMX20_01018 at 1071.190 kb on - strand, within MPMX20_01018 at 1071.250 kb on + strand, within MPMX20_01018 at 1071.250 kb on + strand, within MPMX20_01018 at 1071.250 kb on + strand, within MPMX20_01018 at 1071.258 kb on - strand, within MPMX20_01018 at 1071.258 kb on - strand, within MPMX20_01018 at 1071.258 kb on - strand, within MPMX20_01018 at 1071.290 kb on - strand, within MPMX20_01018 at 1071.315 kb on - strand, within MPMX20_01018 at 1071.315 kb on - strand, within MPMX20_01018 at 1071.415 kb on - strand, within MPMX20_01018 at 1071.456 kb on - strand, within MPMX20_01018 at 1071.456 kb on - strand, within MPMX20_01018 at 1071.456 kb on - strand, within MPMX20_01018 at 1071.492 kb on + strand, within MPMX20_01018 at 1071.492 kb on + strand, within MPMX20_01018 at 1071.492 kb on + strand, within MPMX20_01018 at 1071.500 kb on - strand, within MPMX20_01018 at 1071.556 kb on + strand, within MPMX20_01018 at 1071.583 kb on + strand, within MPMX20_01018 at 1071.583 kb on + strand, within MPMX20_01018 at 1071.662 kb on + strand at 1071.670 kb on - strand at 1071.683 kb on + strand at 1071.683 kb on + strand at 1071.693 kb on + strand at 1071.751 kb on - strand at 1071.814 kb on + strand at 1071.819 kb on + strand at 1071.827 kb on - strand at 1071.827 kb on - strand at 1071.831 kb on + strand at 1071.932 kb on + strand at 1071.932 kb on + strand at 1071.968 kb on - strand at 1071.968 kb on - strand at 1072.086 kb on + strand, within MPMX20_01019 at 1072.086 kb on + strand, within MPMX20_01019 at 1072.094 kb on - strand, within MPMX20_01019 at 1072.109 kb on - strand, within MPMX20_01019 at 1072.109 kb on - strand, within MPMX20_01019 at 1072.247 kb on + strand, within MPMX20_01019 at 1072.303 kb on - strand, within MPMX20_01019 at 1072.328 kb on - strand, within MPMX20_01019 at 1072.352 kb on - strand, within MPMX20_01019 at 1072.504 kb on + strand, within MPMX20_01019 at 1072.523 kb on + strand, within MPMX20_01019 at 1072.603 kb on - strand, within MPMX20_01019 at 1072.694 kb on + strand, within MPMX20_01019 at 1072.697 kb on - strand, within MPMX20_01019 at 1072.697 kb on - strand, within MPMX20_01019 at 1072.709 kb on + strand, within MPMX20_01019 at 1072.735 kb on + strand, within MPMX20_01019
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 1,069,472 + MPMX20_01016 0.75 -0.8 1,069,484 + MPMX20_01016 0.76 -1.9 1,069,560 - MPMX20_01016 0.84 +1.1 1,069,589 - MPMX20_01016 0.88 +0.3 1,069,597 + MPMX20_01016 0.88 +1.5 1,069,605 - MPMX20_01016 0.89 +0.7 1,069,605 - MPMX20_01016 0.89 -1.0 1,069,618 + -1.0 1,069,618 + +0.2 1,069,618 + +0.2 1,069,618 + +0.9 1,069,618 + -0.6 1,069,626 + +1.5 1,069,626 - +0.5 1,069,626 - +1.5 1,069,626 - -0.5 1,069,655 + -0.2 1,069,663 - +0.3 1,069,663 - +2.5 1,069,673 - +0.3 1,069,673 - +0.1 1,069,679 + +0.2 1,069,687 - +0.0 1,069,744 + -0.2 1,069,797 + +0.6 1,069,801 + +0.3 1,069,816 + -0.7 1,069,854 + +0.0 1,069,866 + -2.5 1,069,874 - -1.2 1,070,017 + MPMX20_01017 0.23 +0.8 1,070,087 + MPMX20_01017 0.37 -0.7 1,070,111 + MPMX20_01017 0.42 -0.8 1,070,130 - MPMX20_01017 0.46 -0.8 1,070,155 + MPMX20_01017 0.51 -0.0 1,070,213 - MPMX20_01017 0.63 -1.8 1,070,213 - MPMX20_01017 0.63 -1.4 1,070,213 - MPMX20_01017 0.63 -1.5 1,070,213 - MPMX20_01017 0.63 +0.1 1,070,258 + MPMX20_01017 0.72 -0.3 1,070,503 + +2.5 1,070,511 - +0.8 1,070,801 - MPMX20_01018 0.27 -0.1 1,070,847 + MPMX20_01018 0.31 -0.4 1,070,847 - MPMX20_01018 0.31 +0.1 1,071,065 - MPMX20_01018 0.47 -0.8 1,071,182 + MPMX20_01018 0.55 -1.2 1,071,182 + MPMX20_01018 0.55 -0.3 1,071,190 - MPMX20_01018 0.56 +0.1 1,071,190 - MPMX20_01018 0.56 +0.1 1,071,250 + MPMX20_01018 0.60 -1.6 1,071,250 + MPMX20_01018 0.60 -0.4 1,071,250 + MPMX20_01018 0.60 -1.8 1,071,258 - MPMX20_01018 0.61 +0.1 1,071,258 - MPMX20_01018 0.61 -1.9 1,071,258 - MPMX20_01018 0.61 +1.5 1,071,290 - MPMX20_01018 0.63 -0.6 1,071,315 - MPMX20_01018 0.65 -0.4 1,071,315 - MPMX20_01018 0.65 +0.3 1,071,415 - MPMX20_01018 0.72 +0.2 1,071,456 - MPMX20_01018 0.75 +0.6 1,071,456 - MPMX20_01018 0.75 -0.9 1,071,456 - MPMX20_01018 0.75 -2.3 1,071,492 + MPMX20_01018 0.78 -0.9 1,071,492 + MPMX20_01018 0.78 -1.1 1,071,492 + MPMX20_01018 0.78 -1.4 1,071,500 - MPMX20_01018 0.79 -0.9 1,071,556 + MPMX20_01018 0.83 -0.4 1,071,583 + MPMX20_01018 0.85 -0.5 1,071,583 + MPMX20_01018 0.85 -3.5 1,071,662 + +0.1 1,071,670 - -0.6 1,071,683 + +0.9 1,071,683 + -1.5 1,071,693 + -1.6 1,071,751 - -0.7 1,071,814 + +1.9 1,071,819 + +2.5 1,071,827 - -1.0 1,071,827 - -0.5 1,071,831 + -0.4 1,071,932 + -1.0 1,071,932 + -0.0 1,071,968 - -0.4 1,071,968 - -0.4 1,072,086 + MPMX20_01019 0.16 -0.0 1,072,086 + MPMX20_01019 0.16 -1.1 1,072,094 - MPMX20_01019 0.17 +0.1 1,072,109 - MPMX20_01019 0.19 -1.5 1,072,109 - MPMX20_01019 0.19 -0.4 1,072,247 + MPMX20_01019 0.35 -1.5 1,072,303 - MPMX20_01019 0.41 +3.5 1,072,328 - MPMX20_01019 0.44 -1.9 1,072,352 - MPMX20_01019 0.46 -2.5 1,072,504 + MPMX20_01019 0.64 -2.8 1,072,523 + MPMX20_01019 0.66 -1.4 1,072,603 - MPMX20_01019 0.75 -0.9 1,072,694 + MPMX20_01019 0.85 +0.5 1,072,697 - MPMX20_01019 0.85 -0.4 1,072,697 - MPMX20_01019 0.85 -2.5 1,072,709 + MPMX20_01019 0.87 +0.5 1,072,735 + MPMX20_01019 0.90 -0.7
Or see this region's nucleotide sequence