Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04556

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04553 and MPMX20_04554 are separated by 55 nucleotidesMPMX20_04554 and MPMX20_04555 overlap by 100 nucleotidesMPMX20_04555 and MPMX20_04556 are separated by 150 nucleotidesMPMX20_04556 and MPMX20_04557 overlap by 4 nucleotides MPMX20_04553: MPMX20_04553 - Ferrous-iron efflux pump FieF, at 4,766,125 to 4,767,018 _04553 MPMX20_04554: MPMX20_04554 - hypothetical protein, at 4,767,074 to 4,767,271 _04554 MPMX20_04555: MPMX20_04555 - Periplasmic protein CpxP, at 4,767,172 to 4,767,678 _04555 MPMX20_04556: MPMX20_04556 - Transcriptional regulatory protein CpxR, at 4,767,829 to 4,768,527 _04556 MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897 _04557 Position (kb) 4767 4768 4769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4766.831 kb on + strand, within MPMX20_04553at 4766.836 kb on + strand, within MPMX20_04553at 4766.839 kb on - strand, within MPMX20_04553at 4766.844 kb on - strand, within MPMX20_04553at 4766.849 kb on - strand, within MPMX20_04553at 4766.851 kb on - strand, within MPMX20_04553at 4766.918 kb on + strand, within MPMX20_04553at 4766.918 kb on + strand, within MPMX20_04553at 4766.926 kb on - strand, within MPMX20_04553at 4766.926 kb on - strand, within MPMX20_04553at 4766.989 kb on + strandat 4767.022 kb on + strandat 4767.199 kb on - strandat 4767.280 kb on + strand, within MPMX20_04555at 4767.297 kb on + strand, within MPMX20_04555at 4767.367 kb on - strand, within MPMX20_04555at 4767.387 kb on + strand, within MPMX20_04555at 4767.396 kb on - strand, within MPMX20_04555at 4767.456 kb on + strand, within MPMX20_04555at 4767.464 kb on - strand, within MPMX20_04555at 4767.464 kb on - strand, within MPMX20_04555at 4767.543 kb on + strand, within MPMX20_04555at 4767.570 kb on - strand, within MPMX20_04555at 4767.629 kb on - strandat 4767.629 kb on - strandat 4767.629 kb on - strandat 4767.663 kb on + strandat 4767.673 kb on + strandat 4767.757 kb on + strandat 4767.797 kb on - strandat 4768.026 kb on + strand, within MPMX20_04556at 4768.044 kb on - strand, within MPMX20_04556at 4768.068 kb on + strand, within MPMX20_04556at 4768.076 kb on + strand, within MPMX20_04556at 4768.084 kb on - strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.158 kb on + strand, within MPMX20_04556at 4768.168 kb on + strand, within MPMX20_04556at 4768.176 kb on - strand, within MPMX20_04556at 4768.353 kb on + strand, within MPMX20_04556at 4768.430 kb on + strand, within MPMX20_04556at 4768.479 kb on + strandat 4768.487 kb on - strandat 4768.487 kb on - strandat 4768.534 kb on + strandat 4768.542 kb on + strandat 4768.593 kb on + strandat 4768.603 kb on + strandat 4768.635 kb on + strandat 4768.687 kb on - strand, within MPMX20_04557at 4768.769 kb on - strand, within MPMX20_04557at 4768.844 kb on - strand, within MPMX20_04557at 4768.898 kb on + strand, within MPMX20_04557at 4768.898 kb on + strand, within MPMX20_04557at 4769.129 kb on + strand, within MPMX20_04557at 4769.223 kb on - strand, within MPMX20_04557at 4769.297 kb on + strand, within MPMX20_04557at 4769.305 kb on - strand, within MPMX20_04557at 4769.378 kb on - strand, within MPMX20_04557at 4769.473 kb on - strand, within MPMX20_04557

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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4,766,831 + MPMX20_04553 0.79 -0.2
4,766,836 + MPMX20_04553 0.80 -1.0
4,766,839 - MPMX20_04553 0.80 +0.1
4,766,844 - MPMX20_04553 0.80 -0.9
4,766,849 - MPMX20_04553 0.81 +1.3
4,766,851 - MPMX20_04553 0.81 +1.3
4,766,918 + MPMX20_04553 0.89 -0.7
4,766,918 + MPMX20_04553 0.89 -0.1
4,766,926 - MPMX20_04553 0.90 -0.9
4,766,926 - MPMX20_04553 0.90 +1.5
4,766,989 + +0.0
4,767,022 + +0.9
4,767,199 - +0.3
4,767,280 + MPMX20_04555 0.21 -0.6
4,767,297 + MPMX20_04555 0.25 +1.6
4,767,367 - MPMX20_04555 0.38 -0.1
4,767,387 + MPMX20_04555 0.42 +0.9
4,767,396 - MPMX20_04555 0.44 -1.3
4,767,456 + MPMX20_04555 0.56 -0.5
4,767,464 - MPMX20_04555 0.58 +3.6
4,767,464 - MPMX20_04555 0.58 +0.4
4,767,543 + MPMX20_04555 0.73 +0.0
4,767,570 - MPMX20_04555 0.79 +2.1
4,767,629 - +0.2
4,767,629 - +1.9
4,767,629 - -1.3
4,767,663 + +1.1
4,767,673 + +0.7
4,767,757 + +2.0
4,767,797 - +0.1
4,768,026 + MPMX20_04556 0.28 +0.6
4,768,044 - MPMX20_04556 0.31 -0.3
4,768,068 + MPMX20_04556 0.34 +0.6
4,768,076 + MPMX20_04556 0.35 +0.2
4,768,084 - MPMX20_04556 0.36 -0.9
4,768,094 + MPMX20_04556 0.38 -1.9
4,768,094 + MPMX20_04556 0.38 -3.1
4,768,094 + MPMX20_04556 0.38 -0.6
4,768,094 + MPMX20_04556 0.38 -1.0
4,768,102 - MPMX20_04556 0.39 -1.6
4,768,102 - MPMX20_04556 0.39 +0.6
4,768,102 - MPMX20_04556 0.39 -0.7
4,768,102 - MPMX20_04556 0.39 -0.3
4,768,102 - MPMX20_04556 0.39 -0.4
4,768,102 - MPMX20_04556 0.39 -1.2
4,768,158 + MPMX20_04556 0.47 -2.7
4,768,168 + MPMX20_04556 0.48 +1.3
4,768,176 - MPMX20_04556 0.50 -0.1
4,768,353 + MPMX20_04556 0.75 +2.3
4,768,430 + MPMX20_04556 0.86 +0.6
4,768,479 + -0.4
4,768,487 - -2.4
4,768,487 - +2.9
4,768,534 + -3.7
4,768,542 + -1.4
4,768,593 + +0.9
4,768,603 + -0.7
4,768,635 + -0.1
4,768,687 - MPMX20_04557 0.12 -2.1
4,768,769 - MPMX20_04557 0.18 +1.9
4,768,844 - MPMX20_04557 0.23 +0.1
4,768,898 + MPMX20_04557 0.27 +0.3
4,768,898 + MPMX20_04557 0.27 +1.4
4,769,129 + MPMX20_04557 0.44 -0.4
4,769,223 - MPMX20_04557 0.51 +0.2
4,769,297 + MPMX20_04557 0.56 -0.7
4,769,305 - MPMX20_04557 0.57 +1.3
4,769,378 - MPMX20_04557 0.62 +1.9
4,769,473 - MPMX20_04557 0.69 -3.2

Or see this region's nucleotide sequence