Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02629

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02627 and MPMX20_02628 are separated by 211 nucleotidesMPMX20_02628 and MPMX20_02629 are separated by 40 nucleotidesMPMX20_02629 and MPMX20_02630 are separated by 177 nucleotidesMPMX20_02630 and MPMX20_02631 are separated by 269 nucleotides MPMX20_02627: MPMX20_02627 - Methyl-accepting chemotaxis protein PctC, at 2,771,553 to 2,773,337 _02627 MPMX20_02628: MPMX20_02628 - hypothetical protein, at 2,773,549 to 2,773,788 _02628 MPMX20_02629: MPMX20_02629 - Glutathione-specific gamma-glutamylcyclotransferase, at 2,773,829 to 2,774,524 _02629 MPMX20_02630: MPMX20_02630 - Putative cation transport regulator ChaB, at 2,774,702 to 2,774,932 _02630 MPMX20_02631: MPMX20_02631 - Sodium-potassium/proton antiporter ChaA, at 2,775,202 to 2,776,296 _02631 Position (kb) 2773 2774 2775Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2772.834 kb on + strand, within MPMX20_02627at 2772.932 kb on + strand, within MPMX20_02627at 2772.954 kb on + strand, within MPMX20_02627at 2772.962 kb on - strand, within MPMX20_02627at 2772.962 kb on - strand, within MPMX20_02627at 2772.967 kb on + strand, within MPMX20_02627at 2772.990 kb on - strand, within MPMX20_02627at 2773.084 kb on + strand, within MPMX20_02627at 2773.181 kb on + strandat 2773.181 kb on + strandat 2773.181 kb on + strandat 2773.189 kb on + strandat 2773.189 kb on - strandat 2773.189 kb on - strandat 2773.445 kb on + strandat 2773.466 kb on - strandat 2773.522 kb on + strandat 2773.527 kb on + strandat 2773.527 kb on + strandat 2773.535 kb on - strandat 2773.535 kb on - strandat 2773.535 kb on - strandat 2773.535 kb on - strandat 2773.607 kb on + strand, within MPMX20_02628at 2773.615 kb on - strand, within MPMX20_02628at 2773.615 kb on - strand, within MPMX20_02628at 2773.615 kb on - strand, within MPMX20_02628at 2773.627 kb on + strand, within MPMX20_02628at 2773.627 kb on + strand, within MPMX20_02628at 2773.627 kb on + strand, within MPMX20_02628at 2773.656 kb on - strand, within MPMX20_02628at 2773.686 kb on - strand, within MPMX20_02628at 2773.699 kb on - strand, within MPMX20_02628at 2773.699 kb on - strand, within MPMX20_02628at 2773.750 kb on - strand, within MPMX20_02628at 2773.805 kb on - strandat 2773.805 kb on - strandat 2773.805 kb on - strandat 2773.851 kb on + strandat 2773.934 kb on + strand, within MPMX20_02629at 2773.939 kb on + strand, within MPMX20_02629at 2773.947 kb on - strand, within MPMX20_02629at 2774.010 kb on + strand, within MPMX20_02629at 2774.018 kb on - strand, within MPMX20_02629at 2774.091 kb on - strand, within MPMX20_02629at 2774.122 kb on + strand, within MPMX20_02629at 2774.122 kb on + strand, within MPMX20_02629at 2774.130 kb on - strand, within MPMX20_02629at 2774.214 kb on - strand, within MPMX20_02629at 2774.227 kb on + strand, within MPMX20_02629at 2774.540 kb on + strandat 2774.542 kb on + strandat 2774.561 kb on + strandat 2774.741 kb on - strand, within MPMX20_02630at 2774.793 kb on - strand, within MPMX20_02630at 2774.830 kb on + strand, within MPMX20_02630at 2774.830 kb on - strand, within MPMX20_02630at 2774.843 kb on + strand, within MPMX20_02630at 2774.851 kb on - strand, within MPMX20_02630at 2774.851 kb on - strand, within MPMX20_02630at 2774.890 kb on - strand, within MPMX20_02630at 2774.900 kb on + strand, within MPMX20_02630at 2774.908 kb on - strand, within MPMX20_02630at 2775.082 kb on - strandat 2775.097 kb on + strandat 2775.206 kb on - strandat 2775.267 kb on + strandat 2775.285 kb on - strandat 2775.303 kb on + strandat 2775.349 kb on + strand, within MPMX20_02631at 2775.357 kb on - strand, within MPMX20_02631at 2775.357 kb on - strand, within MPMX20_02631at 2775.357 kb on - strand, within MPMX20_02631at 2775.362 kb on + strand, within MPMX20_02631at 2775.396 kb on - strand, within MPMX20_02631at 2775.510 kb on - strand, within MPMX20_02631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
2,772,834 + MPMX20_02627 0.72 -2.8
2,772,932 + MPMX20_02627 0.77 -2.1
2,772,954 + MPMX20_02627 0.78 -0.0
2,772,962 - MPMX20_02627 0.79 +0.9
2,772,962 - MPMX20_02627 0.79 -1.3
2,772,967 + MPMX20_02627 0.79 +0.2
2,772,990 - MPMX20_02627 0.81 -1.5
2,773,084 + MPMX20_02627 0.86 -2.5
2,773,181 + -2.7
2,773,181 + +0.3
2,773,181 + -0.2
2,773,189 + -3.4
2,773,189 - +0.6
2,773,189 - -0.5
2,773,445 + +0.7
2,773,466 - +1.6
2,773,522 + -2.9
2,773,527 + -0.0
2,773,527 + -0.3
2,773,535 - +1.3
2,773,535 - -1.4
2,773,535 - +1.5
2,773,535 - +0.8
2,773,607 + MPMX20_02628 0.24 +2.1
2,773,615 - MPMX20_02628 0.28 +0.6
2,773,615 - MPMX20_02628 0.28 -2.0
2,773,615 - MPMX20_02628 0.28 -2.2
2,773,627 + MPMX20_02628 0.33 -0.4
2,773,627 + MPMX20_02628 0.33 -2.4
2,773,627 + MPMX20_02628 0.33 -2.3
2,773,656 - MPMX20_02628 0.45 -1.6
2,773,686 - MPMX20_02628 0.57 -1.0
2,773,699 - MPMX20_02628 0.62 +0.8
2,773,699 - MPMX20_02628 0.62 -0.5
2,773,750 - MPMX20_02628 0.84 +0.4
2,773,805 - -2.9
2,773,805 - -2.7
2,773,805 - +0.5
2,773,851 + +0.6
2,773,934 + MPMX20_02629 0.15 +0.3
2,773,939 + MPMX20_02629 0.16 +0.3
2,773,947 - MPMX20_02629 0.17 -1.7
2,774,010 + MPMX20_02629 0.26 -0.4
2,774,018 - MPMX20_02629 0.27 -2.8
2,774,091 - MPMX20_02629 0.38 -2.1
2,774,122 + MPMX20_02629 0.42 -0.2
2,774,122 + MPMX20_02629 0.42 -2.4
2,774,130 - MPMX20_02629 0.43 +0.9
2,774,214 - MPMX20_02629 0.55 -0.2
2,774,227 + MPMX20_02629 0.57 -0.9
2,774,540 + +0.1
2,774,542 + +0.4
2,774,561 + +0.6
2,774,741 - MPMX20_02630 0.17 -0.5
2,774,793 - MPMX20_02630 0.39 -1.6
2,774,830 + MPMX20_02630 0.55 -0.1
2,774,830 - MPMX20_02630 0.55 +0.9
2,774,843 + MPMX20_02630 0.61 -0.1
2,774,851 - MPMX20_02630 0.65 +1.1
2,774,851 - MPMX20_02630 0.65 +0.4
2,774,890 - MPMX20_02630 0.81 -0.5
2,774,900 + MPMX20_02630 0.86 +1.1
2,774,908 - MPMX20_02630 0.89 +0.9
2,775,082 - +0.4
2,775,097 + +0.6
2,775,206 - +3.1
2,775,267 + -0.7
2,775,285 - -0.1
2,775,303 + +0.2
2,775,349 + MPMX20_02631 0.13 -0.5
2,775,357 - MPMX20_02631 0.14 -1.1
2,775,357 - MPMX20_02631 0.14 -3.8
2,775,357 - MPMX20_02631 0.14 +2.1
2,775,362 + MPMX20_02631 0.15 +0.1
2,775,396 - MPMX20_02631 0.18 +0.5
2,775,510 - MPMX20_02631 0.28 -0.7

Or see this region's nucleotide sequence