Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02627 and MPMX20_02628 are separated by 211 nucleotides MPMX20_02628 and MPMX20_02629 are separated by 40 nucleotides MPMX20_02629 and MPMX20_02630 are separated by 177 nucleotides MPMX20_02630 and MPMX20_02631 are separated by 269 nucleotides
MPMX20_02627: MPMX20_02627 - Methyl-accepting chemotaxis protein PctC, at 2,771,553 to 2,773,337
_02627
MPMX20_02628: MPMX20_02628 - hypothetical protein, at 2,773,549 to 2,773,788
_02628
MPMX20_02629: MPMX20_02629 - Glutathione-specific gamma-glutamylcyclotransferase, at 2,773,829 to 2,774,524
_02629
MPMX20_02630: MPMX20_02630 - Putative cation transport regulator ChaB, at 2,774,702 to 2,774,932
_02630
MPMX20_02631: MPMX20_02631 - Sodium-potassium/proton antiporter ChaA, at 2,775,202 to 2,776,296
_02631
Position (kb)
2773
2774
2775 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2772.834 kb on + strand, within MPMX20_02627 at 2772.932 kb on + strand, within MPMX20_02627 at 2772.954 kb on + strand, within MPMX20_02627 at 2772.962 kb on - strand, within MPMX20_02627 at 2772.962 kb on - strand, within MPMX20_02627 at 2772.967 kb on + strand, within MPMX20_02627 at 2772.990 kb on - strand, within MPMX20_02627 at 2773.084 kb on + strand, within MPMX20_02627 at 2773.181 kb on + strand at 2773.181 kb on + strand at 2773.181 kb on + strand at 2773.189 kb on + strand at 2773.189 kb on - strand at 2773.189 kb on - strand at 2773.445 kb on + strand at 2773.466 kb on - strand at 2773.522 kb on + strand at 2773.527 kb on + strand at 2773.527 kb on + strand at 2773.535 kb on - strand at 2773.535 kb on - strand at 2773.535 kb on - strand at 2773.535 kb on - strand at 2773.607 kb on + strand, within MPMX20_02628 at 2773.615 kb on - strand, within MPMX20_02628 at 2773.615 kb on - strand, within MPMX20_02628 at 2773.615 kb on - strand, within MPMX20_02628 at 2773.627 kb on + strand, within MPMX20_02628 at 2773.627 kb on + strand, within MPMX20_02628 at 2773.627 kb on + strand, within MPMX20_02628 at 2773.656 kb on - strand, within MPMX20_02628 at 2773.686 kb on - strand, within MPMX20_02628 at 2773.699 kb on - strand, within MPMX20_02628 at 2773.699 kb on - strand, within MPMX20_02628 at 2773.750 kb on - strand, within MPMX20_02628 at 2773.805 kb on - strand at 2773.805 kb on - strand at 2773.805 kb on - strand at 2773.851 kb on + strand at 2773.934 kb on + strand, within MPMX20_02629 at 2773.939 kb on + strand, within MPMX20_02629 at 2773.947 kb on - strand, within MPMX20_02629 at 2774.010 kb on + strand, within MPMX20_02629 at 2774.018 kb on - strand, within MPMX20_02629 at 2774.091 kb on - strand, within MPMX20_02629 at 2774.122 kb on + strand, within MPMX20_02629 at 2774.122 kb on + strand, within MPMX20_02629 at 2774.130 kb on - strand, within MPMX20_02629 at 2774.214 kb on - strand, within MPMX20_02629 at 2774.227 kb on + strand, within MPMX20_02629 at 2774.540 kb on + strand at 2774.542 kb on + strand at 2774.561 kb on + strand at 2774.741 kb on - strand, within MPMX20_02630 at 2774.793 kb on - strand, within MPMX20_02630 at 2774.830 kb on + strand, within MPMX20_02630 at 2774.830 kb on - strand, within MPMX20_02630 at 2774.843 kb on + strand, within MPMX20_02630 at 2774.851 kb on - strand, within MPMX20_02630 at 2774.851 kb on - strand, within MPMX20_02630 at 2774.890 kb on - strand, within MPMX20_02630 at 2774.900 kb on + strand, within MPMX20_02630 at 2774.908 kb on - strand, within MPMX20_02630 at 2775.082 kb on - strand at 2775.097 kb on + strand at 2775.206 kb on - strand at 2775.267 kb on + strand at 2775.285 kb on - strand at 2775.303 kb on + strand at 2775.349 kb on + strand, within MPMX20_02631 at 2775.357 kb on - strand, within MPMX20_02631 at 2775.357 kb on - strand, within MPMX20_02631 at 2775.357 kb on - strand, within MPMX20_02631 at 2775.362 kb on + strand, within MPMX20_02631 at 2775.396 kb on - strand, within MPMX20_02631 at 2775.510 kb on - strand, within MPMX20_02631
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 2,772,834 + MPMX20_02627 0.72 -2.8 2,772,932 + MPMX20_02627 0.77 -2.1 2,772,954 + MPMX20_02627 0.78 -0.0 2,772,962 - MPMX20_02627 0.79 +0.9 2,772,962 - MPMX20_02627 0.79 -1.3 2,772,967 + MPMX20_02627 0.79 +0.2 2,772,990 - MPMX20_02627 0.81 -1.5 2,773,084 + MPMX20_02627 0.86 -2.5 2,773,181 + -2.7 2,773,181 + +0.3 2,773,181 + -0.2 2,773,189 + -3.4 2,773,189 - +0.6 2,773,189 - -0.5 2,773,445 + +0.7 2,773,466 - +1.6 2,773,522 + -2.9 2,773,527 + -0.0 2,773,527 + -0.3 2,773,535 - +1.3 2,773,535 - -1.4 2,773,535 - +1.5 2,773,535 - +0.8 2,773,607 + MPMX20_02628 0.24 +2.1 2,773,615 - MPMX20_02628 0.28 +0.6 2,773,615 - MPMX20_02628 0.28 -2.0 2,773,615 - MPMX20_02628 0.28 -2.2 2,773,627 + MPMX20_02628 0.33 -0.4 2,773,627 + MPMX20_02628 0.33 -2.4 2,773,627 + MPMX20_02628 0.33 -2.3 2,773,656 - MPMX20_02628 0.45 -1.6 2,773,686 - MPMX20_02628 0.57 -1.0 2,773,699 - MPMX20_02628 0.62 +0.8 2,773,699 - MPMX20_02628 0.62 -0.5 2,773,750 - MPMX20_02628 0.84 +0.4 2,773,805 - -2.9 2,773,805 - -2.7 2,773,805 - +0.5 2,773,851 + +0.6 2,773,934 + MPMX20_02629 0.15 +0.3 2,773,939 + MPMX20_02629 0.16 +0.3 2,773,947 - MPMX20_02629 0.17 -1.7 2,774,010 + MPMX20_02629 0.26 -0.4 2,774,018 - MPMX20_02629 0.27 -2.8 2,774,091 - MPMX20_02629 0.38 -2.1 2,774,122 + MPMX20_02629 0.42 -0.2 2,774,122 + MPMX20_02629 0.42 -2.4 2,774,130 - MPMX20_02629 0.43 +0.9 2,774,214 - MPMX20_02629 0.55 -0.2 2,774,227 + MPMX20_02629 0.57 -0.9 2,774,540 + +0.1 2,774,542 + +0.4 2,774,561 + +0.6 2,774,741 - MPMX20_02630 0.17 -0.5 2,774,793 - MPMX20_02630 0.39 -1.6 2,774,830 + MPMX20_02630 0.55 -0.1 2,774,830 - MPMX20_02630 0.55 +0.9 2,774,843 + MPMX20_02630 0.61 -0.1 2,774,851 - MPMX20_02630 0.65 +1.1 2,774,851 - MPMX20_02630 0.65 +0.4 2,774,890 - MPMX20_02630 0.81 -0.5 2,774,900 + MPMX20_02630 0.86 +1.1 2,774,908 - MPMX20_02630 0.89 +0.9 2,775,082 - +0.4 2,775,097 + +0.6 2,775,206 - +3.1 2,775,267 + -0.7 2,775,285 - -0.1 2,775,303 + +0.2 2,775,349 + MPMX20_02631 0.13 -0.5 2,775,357 - MPMX20_02631 0.14 -1.1 2,775,357 - MPMX20_02631 0.14 -3.8 2,775,357 - MPMX20_02631 0.14 +2.1 2,775,362 + MPMX20_02631 0.15 +0.1 2,775,396 - MPMX20_02631 0.18 +0.5 2,775,510 - MPMX20_02631 0.28 -0.7
Or see this region's nucleotide sequence