Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03621

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03619 and MPMX20_03620 are separated by 97 nucleotidesMPMX20_03620 and MPMX20_03621 are separated by 10 nucleotidesMPMX20_03621 and MPMX20_03622 overlap by 11 nucleotidesMPMX20_03622 and MPMX20_03623 are separated by 171 nucleotides MPMX20_03619: MPMX20_03619 - DNA mismatch repair protein MutS, at 3,808,181 to 3,810,742 _03619 MPMX20_03620: MPMX20_03620 - Protein VdcD, at 3,810,840 to 3,811,076 _03620 MPMX20_03621: MPMX20_03621 - Phenolic acid decarboxylase, at 3,811,087 to 3,812,514 _03621 MPMX20_03622: MPMX20_03622 - putative UbiX-like flavin prenyltransferase, at 3,812,504 to 3,813,106 _03622 MPMX20_03623: MPMX20_03623 - Transcriptional regulator HosA, at 3,813,278 to 3,813,685 _03623 Position (kb) 3811 3812 3813Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 3810.102 kb on - strand, within MPMX20_03619at 3810.148 kb on + strand, within MPMX20_03619at 3810.169 kb on + strand, within MPMX20_03619at 3810.263 kb on + strand, within MPMX20_03619at 3810.302 kb on + strand, within MPMX20_03619at 3810.307 kb on + strand, within MPMX20_03619at 3810.315 kb on - strand, within MPMX20_03619at 3810.360 kb on - strand, within MPMX20_03619at 3810.462 kb on + strand, within MPMX20_03619at 3810.462 kb on + strand, within MPMX20_03619at 3810.462 kb on + strand, within MPMX20_03619at 3810.462 kb on + strand, within MPMX20_03619at 3810.464 kb on + strand, within MPMX20_03619at 3810.464 kb on + strand, within MPMX20_03619at 3810.470 kb on - strand, within MPMX20_03619at 3810.472 kb on - strand, within MPMX20_03619at 3810.482 kb on + strand, within MPMX20_03619at 3810.489 kb on + strandat 3810.497 kb on - strandat 3810.497 kb on - strandat 3810.499 kb on + strandat 3810.609 kb on - strandat 3810.609 kb on - strandat 3810.609 kb on - strandat 3810.709 kb on + strandat 3810.736 kb on + strandat 3810.756 kb on + strandat 3810.756 kb on + strandat 3810.769 kb on - strandat 3810.790 kb on - strandat 3810.881 kb on + strand, within MPMX20_03620at 3810.978 kb on - strand, within MPMX20_03620at 3811.004 kb on - strand, within MPMX20_03620at 3811.006 kb on + strand, within MPMX20_03620at 3811.006 kb on + strand, within MPMX20_03620at 3811.006 kb on + strand, within MPMX20_03620at 3811.014 kb on - strand, within MPMX20_03620at 3811.014 kb on - strand, within MPMX20_03620at 3811.014 kb on - strand, within MPMX20_03620at 3811.014 kb on - strand, within MPMX20_03620at 3811.014 kb on - strand, within MPMX20_03620at 3811.014 kb on - strand, within MPMX20_03620at 3811.015 kb on + strand, within MPMX20_03620at 3811.015 kb on + strand, within MPMX20_03620at 3811.047 kb on + strand, within MPMX20_03620at 3811.052 kb on + strand, within MPMX20_03620at 3811.060 kb on - strandat 3811.065 kb on - strandat 3811.177 kb on + strandat 3811.178 kb on - strandat 3811.425 kb on - strand, within MPMX20_03621at 3811.538 kb on - strand, within MPMX20_03621at 3811.545 kb on + strand, within MPMX20_03621at 3811.553 kb on - strand, within MPMX20_03621at 3811.681 kb on - strand, within MPMX20_03621at 3811.681 kb on - strand, within MPMX20_03621at 3811.758 kb on - strand, within MPMX20_03621at 3811.770 kb on + strand, within MPMX20_03621at 3811.802 kb on + strand, within MPMX20_03621at 3811.811 kb on - strand, within MPMX20_03621at 3811.834 kb on + strand, within MPMX20_03621at 3811.943 kb on - strand, within MPMX20_03621at 3811.943 kb on - strand, within MPMX20_03621at 3811.943 kb on - strand, within MPMX20_03621at 3811.945 kb on + strand, within MPMX20_03621at 3812.156 kb on - strand, within MPMX20_03621at 3812.185 kb on + strand, within MPMX20_03621at 3812.193 kb on - strand, within MPMX20_03621at 3812.193 kb on - strand, within MPMX20_03621at 3812.193 kb on - strand, within MPMX20_03621at 3812.277 kb on - strand, within MPMX20_03621at 3812.280 kb on + strand, within MPMX20_03621at 3812.296 kb on - strand, within MPMX20_03621at 3812.328 kb on - strand, within MPMX20_03621at 3812.331 kb on + strand, within MPMX20_03621at 3812.341 kb on + strand, within MPMX20_03621at 3812.401 kb on + strandat 3812.480 kb on - strandat 3812.492 kb on - strandat 3812.502 kb on - strandat 3812.623 kb on - strand, within MPMX20_03622at 3812.648 kb on + strand, within MPMX20_03622at 3812.687 kb on + strand, within MPMX20_03622at 3812.732 kb on - strand, within MPMX20_03622at 3812.793 kb on + strand, within MPMX20_03622at 3812.803 kb on - strand, within MPMX20_03622at 3812.803 kb on - strand, within MPMX20_03622at 3812.818 kb on - strand, within MPMX20_03622at 3812.818 kb on - strand, within MPMX20_03622at 3812.943 kb on + strand, within MPMX20_03622at 3812.951 kb on - strand, within MPMX20_03622at 3812.951 kb on - strand, within MPMX20_03622at 3812.966 kb on - strand, within MPMX20_03622at 3812.966 kb on - strand, within MPMX20_03622at 3813.060 kb on - strandat 3813.306 kb on + strandat 3813.391 kb on - strand, within MPMX20_03623at 3813.420 kb on + strand, within MPMX20_03623at 3813.447 kb on + strand, within MPMX20_03623at 3813.455 kb on - strand, within MPMX20_03623at 3813.499 kb on + strand, within MPMX20_03623at 3813.507 kb on - strand, within MPMX20_03623

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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3,810,102 - MPMX20_03619 0.75 +1.3
3,810,148 + MPMX20_03619 0.77 -0.6
3,810,169 + MPMX20_03619 0.78 -0.9
3,810,263 + MPMX20_03619 0.81 +0.2
3,810,302 + MPMX20_03619 0.83 +1.9
3,810,307 + MPMX20_03619 0.83 -0.7
3,810,315 - MPMX20_03619 0.83 +0.9
3,810,360 - MPMX20_03619 0.85 +0.2
3,810,462 + MPMX20_03619 0.89 -0.8
3,810,462 + MPMX20_03619 0.89 +1.5
3,810,462 + MPMX20_03619 0.89 -1.7
3,810,462 + MPMX20_03619 0.89 +1.6
3,810,464 + MPMX20_03619 0.89 -0.8
3,810,464 + MPMX20_03619 0.89 -1.8
3,810,470 - MPMX20_03619 0.89 -0.0
3,810,472 - MPMX20_03619 0.89 -0.6
3,810,482 + MPMX20_03619 0.90 -0.6
3,810,489 + +0.4
3,810,497 - +2.3
3,810,497 - -3.1
3,810,499 + -1.0
3,810,609 - -0.9
3,810,609 - -2.5
3,810,609 - -0.8
3,810,709 + -0.2
3,810,736 + -0.3
3,810,756 + -0.3
3,810,756 + -1.7
3,810,769 - +0.2
3,810,790 - -2.0
3,810,881 + MPMX20_03620 0.17 +0.2
3,810,978 - MPMX20_03620 0.58 +0.2
3,811,004 - MPMX20_03620 0.69 -1.6
3,811,006 + MPMX20_03620 0.70 -0.8
3,811,006 + MPMX20_03620 0.70 -0.3
3,811,006 + MPMX20_03620 0.70 +0.3
3,811,014 - MPMX20_03620 0.73 -2.7
3,811,014 - MPMX20_03620 0.73 -0.1
3,811,014 - MPMX20_03620 0.73 +1.2
3,811,014 - MPMX20_03620 0.73 -2.0
3,811,014 - MPMX20_03620 0.73 -0.5
3,811,014 - MPMX20_03620 0.73 +0.7
3,811,015 + MPMX20_03620 0.74 +4.0
3,811,015 + MPMX20_03620 0.74 -0.6
3,811,047 + MPMX20_03620 0.87 +0.5
3,811,052 + MPMX20_03620 0.89 +0.9
3,811,060 - -0.2
3,811,065 - -0.9
3,811,177 + +1.4
3,811,178 - +1.0
3,811,425 - MPMX20_03621 0.24 -0.0
3,811,538 - MPMX20_03621 0.32 -1.1
3,811,545 + MPMX20_03621 0.32 -0.8
3,811,553 - MPMX20_03621 0.33 -0.8
3,811,681 - MPMX20_03621 0.42 +0.9
3,811,681 - MPMX20_03621 0.42 +0.1
3,811,758 - MPMX20_03621 0.47 +0.9
3,811,770 + MPMX20_03621 0.48 +1.6
3,811,802 + MPMX20_03621 0.50 +10.4
3,811,811 - MPMX20_03621 0.51 -0.3
3,811,834 + MPMX20_03621 0.52 +1.0
3,811,943 - MPMX20_03621 0.60 +0.4
3,811,943 - MPMX20_03621 0.60 +0.5
3,811,943 - MPMX20_03621 0.60 -0.0
3,811,945 + MPMX20_03621 0.60 +0.6
3,812,156 - MPMX20_03621 0.75 -1.1
3,812,185 + MPMX20_03621 0.77 +0.2
3,812,193 - MPMX20_03621 0.77 +0.0
3,812,193 - MPMX20_03621 0.77 +1.0
3,812,193 - MPMX20_03621 0.77 -0.6
3,812,277 - MPMX20_03621 0.83 -0.5
3,812,280 + MPMX20_03621 0.84 -0.1
3,812,296 - MPMX20_03621 0.85 -0.6
3,812,328 - MPMX20_03621 0.87 -0.8
3,812,331 + MPMX20_03621 0.87 +0.2
3,812,341 + MPMX20_03621 0.88 -0.4
3,812,401 + -1.1
3,812,480 - +0.2
3,812,492 - -1.5
3,812,502 - +1.0
3,812,623 - MPMX20_03622 0.20 -0.1
3,812,648 + MPMX20_03622 0.24 +2.6
3,812,687 + MPMX20_03622 0.30 +0.2
3,812,732 - MPMX20_03622 0.38 -0.7
3,812,793 + MPMX20_03622 0.48 +0.2
3,812,803 - MPMX20_03622 0.50 +1.6
3,812,803 - MPMX20_03622 0.50 +0.3
3,812,818 - MPMX20_03622 0.52 +0.2
3,812,818 - MPMX20_03622 0.52 +0.5
3,812,943 + MPMX20_03622 0.73 +2.6
3,812,951 - MPMX20_03622 0.74 -0.3
3,812,951 - MPMX20_03622 0.74 -1.6
3,812,966 - MPMX20_03622 0.77 -0.4
3,812,966 - MPMX20_03622 0.77 +0.2
3,813,060 - +0.1
3,813,306 + -0.5
3,813,391 - MPMX20_03623 0.28 -0.5
3,813,420 + MPMX20_03623 0.35 -0.6
3,813,447 + MPMX20_03623 0.41 -1.2
3,813,455 - MPMX20_03623 0.43 -0.8
3,813,499 + MPMX20_03623 0.54 -1.9
3,813,507 - MPMX20_03623 0.56 -0.0

Or see this region's nucleotide sequence