Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03619 and MPMX20_03620 are separated by 97 nucleotides MPMX20_03620 and MPMX20_03621 are separated by 10 nucleotides MPMX20_03621 and MPMX20_03622 overlap by 11 nucleotides MPMX20_03622 and MPMX20_03623 are separated by 171 nucleotides
MPMX20_03619: MPMX20_03619 - DNA mismatch repair protein MutS, at 3,808,181 to 3,810,742
_03619
MPMX20_03620: MPMX20_03620 - Protein VdcD, at 3,810,840 to 3,811,076
_03620
MPMX20_03621: MPMX20_03621 - Phenolic acid decarboxylase, at 3,811,087 to 3,812,514
_03621
MPMX20_03622: MPMX20_03622 - putative UbiX-like flavin prenyltransferase, at 3,812,504 to 3,813,106
_03622
MPMX20_03623: MPMX20_03623 - Transcriptional regulator HosA, at 3,813,278 to 3,813,685
_03623
Position (kb)
3811
3812
3813 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 3810.102 kb on - strand, within MPMX20_03619 at 3810.148 kb on + strand, within MPMX20_03619 at 3810.169 kb on + strand, within MPMX20_03619 at 3810.263 kb on + strand, within MPMX20_03619 at 3810.302 kb on + strand, within MPMX20_03619 at 3810.307 kb on + strand, within MPMX20_03619 at 3810.315 kb on - strand, within MPMX20_03619 at 3810.360 kb on - strand, within MPMX20_03619 at 3810.462 kb on + strand, within MPMX20_03619 at 3810.462 kb on + strand, within MPMX20_03619 at 3810.462 kb on + strand, within MPMX20_03619 at 3810.462 kb on + strand, within MPMX20_03619 at 3810.464 kb on + strand, within MPMX20_03619 at 3810.464 kb on + strand, within MPMX20_03619 at 3810.470 kb on - strand, within MPMX20_03619 at 3810.472 kb on - strand, within MPMX20_03619 at 3810.482 kb on + strand, within MPMX20_03619 at 3810.489 kb on + strand at 3810.497 kb on - strand at 3810.497 kb on - strand at 3810.499 kb on + strand at 3810.609 kb on - strand at 3810.609 kb on - strand at 3810.609 kb on - strand at 3810.709 kb on + strand at 3810.736 kb on + strand at 3810.756 kb on + strand at 3810.756 kb on + strand at 3810.769 kb on - strand at 3810.790 kb on - strand at 3810.881 kb on + strand, within MPMX20_03620 at 3810.978 kb on - strand, within MPMX20_03620 at 3811.004 kb on - strand, within MPMX20_03620 at 3811.006 kb on + strand, within MPMX20_03620 at 3811.006 kb on + strand, within MPMX20_03620 at 3811.006 kb on + strand, within MPMX20_03620 at 3811.014 kb on - strand, within MPMX20_03620 at 3811.014 kb on - strand, within MPMX20_03620 at 3811.014 kb on - strand, within MPMX20_03620 at 3811.014 kb on - strand, within MPMX20_03620 at 3811.014 kb on - strand, within MPMX20_03620 at 3811.014 kb on - strand, within MPMX20_03620 at 3811.015 kb on + strand, within MPMX20_03620 at 3811.015 kb on + strand, within MPMX20_03620 at 3811.047 kb on + strand, within MPMX20_03620 at 3811.052 kb on + strand, within MPMX20_03620 at 3811.060 kb on - strand at 3811.065 kb on - strand at 3811.177 kb on + strand at 3811.178 kb on - strand at 3811.425 kb on - strand, within MPMX20_03621 at 3811.538 kb on - strand, within MPMX20_03621 at 3811.545 kb on + strand, within MPMX20_03621 at 3811.553 kb on - strand, within MPMX20_03621 at 3811.681 kb on - strand, within MPMX20_03621 at 3811.681 kb on - strand, within MPMX20_03621 at 3811.758 kb on - strand, within MPMX20_03621 at 3811.770 kb on + strand, within MPMX20_03621 at 3811.802 kb on + strand, within MPMX20_03621 at 3811.811 kb on - strand, within MPMX20_03621 at 3811.834 kb on + strand, within MPMX20_03621 at 3811.943 kb on - strand, within MPMX20_03621 at 3811.943 kb on - strand, within MPMX20_03621 at 3811.943 kb on - strand, within MPMX20_03621 at 3811.945 kb on + strand, within MPMX20_03621 at 3812.156 kb on - strand, within MPMX20_03621 at 3812.185 kb on + strand, within MPMX20_03621 at 3812.193 kb on - strand, within MPMX20_03621 at 3812.193 kb on - strand, within MPMX20_03621 at 3812.193 kb on - strand, within MPMX20_03621 at 3812.277 kb on - strand, within MPMX20_03621 at 3812.280 kb on + strand, within MPMX20_03621 at 3812.296 kb on - strand, within MPMX20_03621 at 3812.328 kb on - strand, within MPMX20_03621 at 3812.331 kb on + strand, within MPMX20_03621 at 3812.341 kb on + strand, within MPMX20_03621 at 3812.401 kb on + strand at 3812.480 kb on - strand at 3812.492 kb on - strand at 3812.502 kb on - strand at 3812.623 kb on - strand, within MPMX20_03622 at 3812.648 kb on + strand, within MPMX20_03622 at 3812.687 kb on + strand, within MPMX20_03622 at 3812.732 kb on - strand, within MPMX20_03622 at 3812.793 kb on + strand, within MPMX20_03622 at 3812.803 kb on - strand, within MPMX20_03622 at 3812.803 kb on - strand, within MPMX20_03622 at 3812.818 kb on - strand, within MPMX20_03622 at 3812.818 kb on - strand, within MPMX20_03622 at 3812.943 kb on + strand, within MPMX20_03622 at 3812.951 kb on - strand, within MPMX20_03622 at 3812.951 kb on - strand, within MPMX20_03622 at 3812.966 kb on - strand, within MPMX20_03622 at 3812.966 kb on - strand, within MPMX20_03622 at 3813.060 kb on - strand at 3813.306 kb on + strand at 3813.391 kb on - strand, within MPMX20_03623 at 3813.420 kb on + strand, within MPMX20_03623 at 3813.447 kb on + strand, within MPMX20_03623 at 3813.455 kb on - strand, within MPMX20_03623 at 3813.499 kb on + strand, within MPMX20_03623 at 3813.507 kb on - strand, within MPMX20_03623
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 3,810,102 - MPMX20_03619 0.75 +1.3 3,810,148 + MPMX20_03619 0.77 -0.6 3,810,169 + MPMX20_03619 0.78 -0.9 3,810,263 + MPMX20_03619 0.81 +0.2 3,810,302 + MPMX20_03619 0.83 +1.9 3,810,307 + MPMX20_03619 0.83 -0.7 3,810,315 - MPMX20_03619 0.83 +0.9 3,810,360 - MPMX20_03619 0.85 +0.2 3,810,462 + MPMX20_03619 0.89 -0.8 3,810,462 + MPMX20_03619 0.89 +1.5 3,810,462 + MPMX20_03619 0.89 -1.7 3,810,462 + MPMX20_03619 0.89 +1.6 3,810,464 + MPMX20_03619 0.89 -0.8 3,810,464 + MPMX20_03619 0.89 -1.8 3,810,470 - MPMX20_03619 0.89 -0.0 3,810,472 - MPMX20_03619 0.89 -0.6 3,810,482 + MPMX20_03619 0.90 -0.6 3,810,489 + +0.4 3,810,497 - +2.3 3,810,497 - -3.1 3,810,499 + -1.0 3,810,609 - -0.9 3,810,609 - -2.5 3,810,609 - -0.8 3,810,709 + -0.2 3,810,736 + -0.3 3,810,756 + -0.3 3,810,756 + -1.7 3,810,769 - +0.2 3,810,790 - -2.0 3,810,881 + MPMX20_03620 0.17 +0.2 3,810,978 - MPMX20_03620 0.58 +0.2 3,811,004 - MPMX20_03620 0.69 -1.6 3,811,006 + MPMX20_03620 0.70 -0.8 3,811,006 + MPMX20_03620 0.70 -0.3 3,811,006 + MPMX20_03620 0.70 +0.3 3,811,014 - MPMX20_03620 0.73 -2.7 3,811,014 - MPMX20_03620 0.73 -0.1 3,811,014 - MPMX20_03620 0.73 +1.2 3,811,014 - MPMX20_03620 0.73 -2.0 3,811,014 - MPMX20_03620 0.73 -0.5 3,811,014 - MPMX20_03620 0.73 +0.7 3,811,015 + MPMX20_03620 0.74 +4.0 3,811,015 + MPMX20_03620 0.74 -0.6 3,811,047 + MPMX20_03620 0.87 +0.5 3,811,052 + MPMX20_03620 0.89 +0.9 3,811,060 - -0.2 3,811,065 - -0.9 3,811,177 + +1.4 3,811,178 - +1.0 3,811,425 - MPMX20_03621 0.24 -0.0 3,811,538 - MPMX20_03621 0.32 -1.1 3,811,545 + MPMX20_03621 0.32 -0.8 3,811,553 - MPMX20_03621 0.33 -0.8 3,811,681 - MPMX20_03621 0.42 +0.9 3,811,681 - MPMX20_03621 0.42 +0.1 3,811,758 - MPMX20_03621 0.47 +0.9 3,811,770 + MPMX20_03621 0.48 +1.6 3,811,802 + MPMX20_03621 0.50 +10.4 3,811,811 - MPMX20_03621 0.51 -0.3 3,811,834 + MPMX20_03621 0.52 +1.0 3,811,943 - MPMX20_03621 0.60 +0.4 3,811,943 - MPMX20_03621 0.60 +0.5 3,811,943 - MPMX20_03621 0.60 -0.0 3,811,945 + MPMX20_03621 0.60 +0.6 3,812,156 - MPMX20_03621 0.75 -1.1 3,812,185 + MPMX20_03621 0.77 +0.2 3,812,193 - MPMX20_03621 0.77 +0.0 3,812,193 - MPMX20_03621 0.77 +1.0 3,812,193 - MPMX20_03621 0.77 -0.6 3,812,277 - MPMX20_03621 0.83 -0.5 3,812,280 + MPMX20_03621 0.84 -0.1 3,812,296 - MPMX20_03621 0.85 -0.6 3,812,328 - MPMX20_03621 0.87 -0.8 3,812,331 + MPMX20_03621 0.87 +0.2 3,812,341 + MPMX20_03621 0.88 -0.4 3,812,401 + -1.1 3,812,480 - +0.2 3,812,492 - -1.5 3,812,502 - +1.0 3,812,623 - MPMX20_03622 0.20 -0.1 3,812,648 + MPMX20_03622 0.24 +2.6 3,812,687 + MPMX20_03622 0.30 +0.2 3,812,732 - MPMX20_03622 0.38 -0.7 3,812,793 + MPMX20_03622 0.48 +0.2 3,812,803 - MPMX20_03622 0.50 +1.6 3,812,803 - MPMX20_03622 0.50 +0.3 3,812,818 - MPMX20_03622 0.52 +0.2 3,812,818 - MPMX20_03622 0.52 +0.5 3,812,943 + MPMX20_03622 0.73 +2.6 3,812,951 - MPMX20_03622 0.74 -0.3 3,812,951 - MPMX20_03622 0.74 -1.6 3,812,966 - MPMX20_03622 0.77 -0.4 3,812,966 - MPMX20_03622 0.77 +0.2 3,813,060 - +0.1 3,813,306 + -0.5 3,813,391 - MPMX20_03623 0.28 -0.5 3,813,420 + MPMX20_03623 0.35 -0.6 3,813,447 + MPMX20_03623 0.41 -1.2 3,813,455 - MPMX20_03623 0.43 -0.8 3,813,499 + MPMX20_03623 0.54 -1.9 3,813,507 - MPMX20_03623 0.56 -0.0
Or see this region's nucleotide sequence