Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01889 and MPMX20_01890 are separated by 105 nucleotides MPMX20_01890 and MPMX20_01891 are separated by 105 nucleotides
MPMX20_01889: MPMX20_01889 - putative ketoamine kinase, at 1,981,851 to 1,982,711
_01889
MPMX20_01890: MPMX20_01890 - hypothetical protein, at 1,982,817 to 1,983,107
_01890
MPMX20_01891: MPMX20_01891 - ATP-dependent 6-phosphofructokinase isozyme 2, at 1,983,213 to 1,984,145
_01891
Position (kb)
1982
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1981.849 kb on - strand at 1981.898 kb on - strand at 1981.923 kb on + strand at 1981.923 kb on + strand at 1981.923 kb on + strand at 1981.933 kb on + strand at 1981.933 kb on + strand at 1981.933 kb on + strand at 1981.941 kb on - strand, within MPMX20_01889 at 1981.990 kb on + strand, within MPMX20_01889 at 1981.998 kb on - strand, within MPMX20_01889 at 1982.065 kb on - strand, within MPMX20_01889 at 1982.128 kb on - strand, within MPMX20_01889 at 1982.152 kb on + strand, within MPMX20_01889 at 1982.161 kb on - strand, within MPMX20_01889 at 1982.224 kb on + strand, within MPMX20_01889 at 1982.224 kb on - strand, within MPMX20_01889 at 1982.224 kb on - strand, within MPMX20_01889 at 1982.307 kb on - strand, within MPMX20_01889 at 1982.314 kb on + strand, within MPMX20_01889 at 1982.314 kb on - strand, within MPMX20_01889 at 1982.324 kb on - strand, within MPMX20_01889 at 1982.455 kb on + strand, within MPMX20_01889 at 1982.472 kb on + strand, within MPMX20_01889 at 1982.472 kb on + strand, within MPMX20_01889 at 1982.479 kb on + strand, within MPMX20_01889 at 1982.479 kb on + strand, within MPMX20_01889 at 1982.479 kb on + strand, within MPMX20_01889 at 1982.479 kb on + strand, within MPMX20_01889 at 1982.480 kb on - strand, within MPMX20_01889 at 1982.487 kb on - strand, within MPMX20_01889 at 1982.487 kb on - strand, within MPMX20_01889 at 1982.487 kb on - strand, within MPMX20_01889 at 1982.522 kb on + strand, within MPMX20_01889 at 1982.569 kb on - strand, within MPMX20_01889 at 1982.673 kb on - strand at 1982.675 kb on + strand at 1982.691 kb on - strand at 1982.786 kb on + strand at 1982.788 kb on + strand at 1982.788 kb on + strand at 1982.788 kb on + strand at 1982.794 kb on - strand at 1982.794 kb on - strand at 1982.796 kb on + strand at 1982.796 kb on + strand at 1982.884 kb on + strand, within MPMX20_01890 at 1982.884 kb on + strand, within MPMX20_01890 at 1982.888 kb on + strand, within MPMX20_01890 at 1982.892 kb on - strand, within MPMX20_01890 at 1982.916 kb on - strand, within MPMX20_01890 at 1982.916 kb on - strand, within MPMX20_01890 at 1982.923 kb on - strand, within MPMX20_01890 at 1982.926 kb on - strand, within MPMX20_01890 at 1982.928 kb on - strand, within MPMX20_01890 at 1982.932 kb on + strand, within MPMX20_01890 at 1982.950 kb on - strand, within MPMX20_01890 at 1983.022 kb on - strand, within MPMX20_01890 at 1983.035 kb on + strand, within MPMX20_01890 at 1983.035 kb on + strand, within MPMX20_01890 at 1983.043 kb on - strand, within MPMX20_01890 at 1983.043 kb on - strand, within MPMX20_01890 at 1983.077 kb on + strand, within MPMX20_01890 at 1983.102 kb on + strand at 1983.110 kb on - strand at 1983.187 kb on - strand at 1983.268 kb on + strand at 1983.282 kb on + strand at 1983.302 kb on + strand at 1983.348 kb on - strand, within MPMX20_01891 at 1983.358 kb on - strand, within MPMX20_01891 at 1983.425 kb on + strand, within MPMX20_01891 at 1983.467 kb on + strand, within MPMX20_01891 at 1983.467 kb on + strand, within MPMX20_01891 at 1983.467 kb on + strand, within MPMX20_01891 at 1983.475 kb on - strand, within MPMX20_01891 at 1983.475 kb on - strand, within MPMX20_01891 at 1983.545 kb on + strand, within MPMX20_01891 at 1983.589 kb on + strand, within MPMX20_01891 at 1983.597 kb on - strand, within MPMX20_01891 at 1983.599 kb on + strand, within MPMX20_01891 at 1983.599 kb on + strand, within MPMX20_01891 at 1983.599 kb on + strand, within MPMX20_01891 at 1983.599 kb on + strand, within MPMX20_01891 at 1983.599 kb on + strand, within MPMX20_01891 at 1983.599 kb on + strand, within MPMX20_01891 at 1983.607 kb on - strand, within MPMX20_01891 at 1983.607 kb on - strand, within MPMX20_01891 at 1983.615 kb on + strand, within MPMX20_01891 at 1983.633 kb on - strand, within MPMX20_01891 at 1983.653 kb on - strand, within MPMX20_01891 at 1983.695 kb on - strand, within MPMX20_01891 at 1983.744 kb on - strand, within MPMX20_01891 at 1983.788 kb on + strand, within MPMX20_01891 at 1983.809 kb on + strand, within MPMX20_01891 at 1983.817 kb on - strand, within MPMX20_01891 at 1983.817 kb on - strand, within MPMX20_01891 at 1983.844 kb on + strand, within MPMX20_01891 at 1983.847 kb on - strand, within MPMX20_01891 at 1983.852 kb on - strand, within MPMX20_01891 at 1983.852 kb on - strand, within MPMX20_01891 at 1983.852 kb on - strand, within MPMX20_01891 at 1983.936 kb on + strand, within MPMX20_01891 at 1983.936 kb on + strand, within MPMX20_01891 at 1983.952 kb on + strand, within MPMX20_01891 at 1984.024 kb on - strand, within MPMX20_01891 at 1984.051 kb on - strand, within MPMX20_01891 at 1984.062 kb on + strand at 1984.070 kb on - strand at 1984.070 kb on - strand at 1984.080 kb on + strand at 1984.088 kb on - strand at 1984.088 kb on - strand at 1984.094 kb on + strand at 1984.094 kb on + strand at 1984.094 kb on + strand at 1984.094 kb on + strand at 1984.102 kb on - strand at 1984.102 kb on - strand at 1984.104 kb on + strand at 1984.104 kb on + strand at 1984.104 kb on + strand at 1984.104 kb on + strand at 1984.104 kb on + strand at 1984.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,981,849 - +0.0 1,981,898 - -1.0 1,981,923 + -0.9 1,981,923 + +2.1 1,981,923 + +1.1 1,981,933 + +0.5 1,981,933 + -1.9 1,981,933 + -1.7 1,981,941 - MPMX20_01889 0.10 +0.0 1,981,990 + MPMX20_01889 0.16 -2.0 1,981,998 - MPMX20_01889 0.17 -0.1 1,982,065 - MPMX20_01889 0.25 -0.1 1,982,128 - MPMX20_01889 0.32 +0.6 1,982,152 + MPMX20_01889 0.35 +0.9 1,982,161 - MPMX20_01889 0.36 +0.1 1,982,224 + MPMX20_01889 0.43 +2.7 1,982,224 - MPMX20_01889 0.43 -0.1 1,982,224 - MPMX20_01889 0.43 -0.4 1,982,307 - MPMX20_01889 0.53 -1.0 1,982,314 + MPMX20_01889 0.54 +0.1 1,982,314 - MPMX20_01889 0.54 -0.5 1,982,324 - MPMX20_01889 0.55 +0.3 1,982,455 + MPMX20_01889 0.70 -2.1 1,982,472 + MPMX20_01889 0.72 -0.0 1,982,472 + MPMX20_01889 0.72 +0.7 1,982,479 + MPMX20_01889 0.73 -1.1 1,982,479 + MPMX20_01889 0.73 -0.9 1,982,479 + MPMX20_01889 0.73 -0.5 1,982,479 + MPMX20_01889 0.73 -0.2 1,982,480 - MPMX20_01889 0.73 +0.5 1,982,487 - MPMX20_01889 0.74 -0.2 1,982,487 - MPMX20_01889 0.74 +2.9 1,982,487 - MPMX20_01889 0.74 -0.7 1,982,522 + MPMX20_01889 0.78 -0.5 1,982,569 - MPMX20_01889 0.83 +1.7 1,982,673 - +1.3 1,982,675 + -1.8 1,982,691 - +1.3 1,982,786 + -1.5 1,982,788 + +0.7 1,982,788 + +0.3 1,982,788 + -0.6 1,982,794 - -0.5 1,982,794 - -0.8 1,982,796 + -1.1 1,982,796 + -0.5 1,982,884 + MPMX20_01890 0.23 +1.7 1,982,884 + MPMX20_01890 0.23 +0.1 1,982,888 + MPMX20_01890 0.24 +0.2 1,982,892 - MPMX20_01890 0.26 -0.1 1,982,916 - MPMX20_01890 0.34 +5.6 1,982,916 - MPMX20_01890 0.34 -1.1 1,982,923 - MPMX20_01890 0.36 +0.5 1,982,926 - MPMX20_01890 0.37 +3.2 1,982,928 - MPMX20_01890 0.38 +0.0 1,982,932 + MPMX20_01890 0.40 -0.8 1,982,950 - MPMX20_01890 0.46 -0.2 1,983,022 - MPMX20_01890 0.70 +0.2 1,983,035 + MPMX20_01890 0.75 -0.5 1,983,035 + MPMX20_01890 0.75 -0.3 1,983,043 - MPMX20_01890 0.78 -0.9 1,983,043 - MPMX20_01890 0.78 -0.2 1,983,077 + MPMX20_01890 0.89 -1.1 1,983,102 + +0.1 1,983,110 - +2.5 1,983,187 - +0.4 1,983,268 + +1.3 1,983,282 + +1.7 1,983,302 + -1.4 1,983,348 - MPMX20_01891 0.14 +0.8 1,983,358 - MPMX20_01891 0.16 -1.5 1,983,425 + MPMX20_01891 0.23 -0.3 1,983,467 + MPMX20_01891 0.27 +0.6 1,983,467 + MPMX20_01891 0.27 +0.5 1,983,467 + MPMX20_01891 0.27 +0.7 1,983,475 - MPMX20_01891 0.28 +0.4 1,983,475 - MPMX20_01891 0.28 -0.7 1,983,545 + MPMX20_01891 0.36 -0.0 1,983,589 + MPMX20_01891 0.40 -0.9 1,983,597 - MPMX20_01891 0.41 +1.7 1,983,599 + MPMX20_01891 0.41 -0.1 1,983,599 + MPMX20_01891 0.41 -0.1 1,983,599 + MPMX20_01891 0.41 -0.6 1,983,599 + MPMX20_01891 0.41 +1.3 1,983,599 + MPMX20_01891 0.41 -0.7 1,983,599 + MPMX20_01891 0.41 +0.9 1,983,607 - MPMX20_01891 0.42 -0.1 1,983,607 - MPMX20_01891 0.42 -0.6 1,983,615 + MPMX20_01891 0.43 +2.6 1,983,633 - MPMX20_01891 0.45 +0.3 1,983,653 - MPMX20_01891 0.47 +0.4 1,983,695 - MPMX20_01891 0.52 +0.1 1,983,744 - MPMX20_01891 0.57 -0.6 1,983,788 + MPMX20_01891 0.62 -2.6 1,983,809 + MPMX20_01891 0.64 -1.0 1,983,817 - MPMX20_01891 0.65 -0.3 1,983,817 - MPMX20_01891 0.65 -0.2 1,983,844 + MPMX20_01891 0.68 -1.0 1,983,847 - MPMX20_01891 0.68 -0.3 1,983,852 - MPMX20_01891 0.68 +0.3 1,983,852 - MPMX20_01891 0.68 +0.1 1,983,852 - MPMX20_01891 0.68 -0.4 1,983,936 + MPMX20_01891 0.77 +0.1 1,983,936 + MPMX20_01891 0.77 -1.0 1,983,952 + MPMX20_01891 0.79 +0.7 1,984,024 - MPMX20_01891 0.87 +0.1 1,984,051 - MPMX20_01891 0.90 -0.5 1,984,062 + -1.0 1,984,070 - +0.1 1,984,070 - -2.3 1,984,080 + -1.0 1,984,088 - +1.3 1,984,088 - +0.1 1,984,094 + -1.4 1,984,094 + -0.2 1,984,094 + -2.5 1,984,094 + -1.4 1,984,102 - +0.3 1,984,102 - +2.9 1,984,104 + -0.0 1,984,104 + -0.8 1,984,104 + -1.1 1,984,104 + +1.1 1,984,104 + -0.7 1,984,107 + -0.7
Or see this region's nucleotide sequence