Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01890

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01889 and MPMX20_01890 are separated by 105 nucleotidesMPMX20_01890 and MPMX20_01891 are separated by 105 nucleotides MPMX20_01889: MPMX20_01889 - putative ketoamine kinase, at 1,981,851 to 1,982,711 _01889 MPMX20_01890: MPMX20_01890 - hypothetical protein, at 1,982,817 to 1,983,107 _01890 MPMX20_01891: MPMX20_01891 - ATP-dependent 6-phosphofructokinase isozyme 2, at 1,983,213 to 1,984,145 _01891 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1981.849 kb on - strandat 1981.898 kb on - strandat 1981.923 kb on + strandat 1981.923 kb on + strandat 1981.923 kb on + strandat 1981.933 kb on + strandat 1981.933 kb on + strandat 1981.933 kb on + strandat 1981.941 kb on - strand, within MPMX20_01889at 1981.990 kb on + strand, within MPMX20_01889at 1981.998 kb on - strand, within MPMX20_01889at 1982.065 kb on - strand, within MPMX20_01889at 1982.128 kb on - strand, within MPMX20_01889at 1982.152 kb on + strand, within MPMX20_01889at 1982.161 kb on - strand, within MPMX20_01889at 1982.224 kb on + strand, within MPMX20_01889at 1982.224 kb on - strand, within MPMX20_01889at 1982.224 kb on - strand, within MPMX20_01889at 1982.307 kb on - strand, within MPMX20_01889at 1982.314 kb on + strand, within MPMX20_01889at 1982.314 kb on - strand, within MPMX20_01889at 1982.324 kb on - strand, within MPMX20_01889at 1982.455 kb on + strand, within MPMX20_01889at 1982.472 kb on + strand, within MPMX20_01889at 1982.472 kb on + strand, within MPMX20_01889at 1982.479 kb on + strand, within MPMX20_01889at 1982.479 kb on + strand, within MPMX20_01889at 1982.479 kb on + strand, within MPMX20_01889at 1982.479 kb on + strand, within MPMX20_01889at 1982.480 kb on - strand, within MPMX20_01889at 1982.487 kb on - strand, within MPMX20_01889at 1982.487 kb on - strand, within MPMX20_01889at 1982.487 kb on - strand, within MPMX20_01889at 1982.522 kb on + strand, within MPMX20_01889at 1982.569 kb on - strand, within MPMX20_01889at 1982.673 kb on - strandat 1982.675 kb on + strandat 1982.691 kb on - strandat 1982.786 kb on + strandat 1982.788 kb on + strandat 1982.788 kb on + strandat 1982.788 kb on + strandat 1982.794 kb on - strandat 1982.794 kb on - strandat 1982.796 kb on + strandat 1982.796 kb on + strandat 1982.884 kb on + strand, within MPMX20_01890at 1982.884 kb on + strand, within MPMX20_01890at 1982.888 kb on + strand, within MPMX20_01890at 1982.892 kb on - strand, within MPMX20_01890at 1982.916 kb on - strand, within MPMX20_01890at 1982.916 kb on - strand, within MPMX20_01890at 1982.923 kb on - strand, within MPMX20_01890at 1982.926 kb on - strand, within MPMX20_01890at 1982.928 kb on - strand, within MPMX20_01890at 1982.932 kb on + strand, within MPMX20_01890at 1982.950 kb on - strand, within MPMX20_01890at 1983.022 kb on - strand, within MPMX20_01890at 1983.035 kb on + strand, within MPMX20_01890at 1983.035 kb on + strand, within MPMX20_01890at 1983.043 kb on - strand, within MPMX20_01890at 1983.043 kb on - strand, within MPMX20_01890at 1983.077 kb on + strand, within MPMX20_01890at 1983.102 kb on + strandat 1983.110 kb on - strandat 1983.187 kb on - strandat 1983.268 kb on + strandat 1983.282 kb on + strandat 1983.302 kb on + strandat 1983.348 kb on - strand, within MPMX20_01891at 1983.358 kb on - strand, within MPMX20_01891at 1983.425 kb on + strand, within MPMX20_01891at 1983.467 kb on + strand, within MPMX20_01891at 1983.467 kb on + strand, within MPMX20_01891at 1983.467 kb on + strand, within MPMX20_01891at 1983.475 kb on - strand, within MPMX20_01891at 1983.475 kb on - strand, within MPMX20_01891at 1983.545 kb on + strand, within MPMX20_01891at 1983.589 kb on + strand, within MPMX20_01891at 1983.597 kb on - strand, within MPMX20_01891at 1983.599 kb on + strand, within MPMX20_01891at 1983.599 kb on + strand, within MPMX20_01891at 1983.599 kb on + strand, within MPMX20_01891at 1983.599 kb on + strand, within MPMX20_01891at 1983.599 kb on + strand, within MPMX20_01891at 1983.599 kb on + strand, within MPMX20_01891at 1983.607 kb on - strand, within MPMX20_01891at 1983.607 kb on - strand, within MPMX20_01891at 1983.615 kb on + strand, within MPMX20_01891at 1983.633 kb on - strand, within MPMX20_01891at 1983.653 kb on - strand, within MPMX20_01891at 1983.695 kb on - strand, within MPMX20_01891at 1983.744 kb on - strand, within MPMX20_01891at 1983.788 kb on + strand, within MPMX20_01891at 1983.809 kb on + strand, within MPMX20_01891at 1983.817 kb on - strand, within MPMX20_01891at 1983.817 kb on - strand, within MPMX20_01891at 1983.844 kb on + strand, within MPMX20_01891at 1983.847 kb on - strand, within MPMX20_01891at 1983.852 kb on - strand, within MPMX20_01891at 1983.852 kb on - strand, within MPMX20_01891at 1983.852 kb on - strand, within MPMX20_01891at 1983.936 kb on + strand, within MPMX20_01891at 1983.936 kb on + strand, within MPMX20_01891at 1983.952 kb on + strand, within MPMX20_01891at 1984.024 kb on - strand, within MPMX20_01891at 1984.051 kb on - strand, within MPMX20_01891at 1984.062 kb on + strandat 1984.070 kb on - strandat 1984.070 kb on - strandat 1984.080 kb on + strandat 1984.088 kb on - strandat 1984.088 kb on - strandat 1984.094 kb on + strandat 1984.094 kb on + strandat 1984.094 kb on + strandat 1984.094 kb on + strandat 1984.102 kb on - strandat 1984.102 kb on - strandat 1984.104 kb on + strandat 1984.104 kb on + strandat 1984.104 kb on + strandat 1984.104 kb on + strandat 1984.104 kb on + strandat 1984.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,981,849 - +0.0
1,981,898 - -1.0
1,981,923 + -0.9
1,981,923 + +2.1
1,981,923 + +1.1
1,981,933 + +0.5
1,981,933 + -1.9
1,981,933 + -1.7
1,981,941 - MPMX20_01889 0.10 +0.0
1,981,990 + MPMX20_01889 0.16 -2.0
1,981,998 - MPMX20_01889 0.17 -0.1
1,982,065 - MPMX20_01889 0.25 -0.1
1,982,128 - MPMX20_01889 0.32 +0.6
1,982,152 + MPMX20_01889 0.35 +0.9
1,982,161 - MPMX20_01889 0.36 +0.1
1,982,224 + MPMX20_01889 0.43 +2.7
1,982,224 - MPMX20_01889 0.43 -0.1
1,982,224 - MPMX20_01889 0.43 -0.4
1,982,307 - MPMX20_01889 0.53 -1.0
1,982,314 + MPMX20_01889 0.54 +0.1
1,982,314 - MPMX20_01889 0.54 -0.5
1,982,324 - MPMX20_01889 0.55 +0.3
1,982,455 + MPMX20_01889 0.70 -2.1
1,982,472 + MPMX20_01889 0.72 -0.0
1,982,472 + MPMX20_01889 0.72 +0.7
1,982,479 + MPMX20_01889 0.73 -1.1
1,982,479 + MPMX20_01889 0.73 -0.9
1,982,479 + MPMX20_01889 0.73 -0.5
1,982,479 + MPMX20_01889 0.73 -0.2
1,982,480 - MPMX20_01889 0.73 +0.5
1,982,487 - MPMX20_01889 0.74 -0.2
1,982,487 - MPMX20_01889 0.74 +2.9
1,982,487 - MPMX20_01889 0.74 -0.7
1,982,522 + MPMX20_01889 0.78 -0.5
1,982,569 - MPMX20_01889 0.83 +1.7
1,982,673 - +1.3
1,982,675 + -1.8
1,982,691 - +1.3
1,982,786 + -1.5
1,982,788 + +0.7
1,982,788 + +0.3
1,982,788 + -0.6
1,982,794 - -0.5
1,982,794 - -0.8
1,982,796 + -1.1
1,982,796 + -0.5
1,982,884 + MPMX20_01890 0.23 +1.7
1,982,884 + MPMX20_01890 0.23 +0.1
1,982,888 + MPMX20_01890 0.24 +0.2
1,982,892 - MPMX20_01890 0.26 -0.1
1,982,916 - MPMX20_01890 0.34 +5.6
1,982,916 - MPMX20_01890 0.34 -1.1
1,982,923 - MPMX20_01890 0.36 +0.5
1,982,926 - MPMX20_01890 0.37 +3.2
1,982,928 - MPMX20_01890 0.38 +0.0
1,982,932 + MPMX20_01890 0.40 -0.8
1,982,950 - MPMX20_01890 0.46 -0.2
1,983,022 - MPMX20_01890 0.70 +0.2
1,983,035 + MPMX20_01890 0.75 -0.5
1,983,035 + MPMX20_01890 0.75 -0.3
1,983,043 - MPMX20_01890 0.78 -0.9
1,983,043 - MPMX20_01890 0.78 -0.2
1,983,077 + MPMX20_01890 0.89 -1.1
1,983,102 + +0.1
1,983,110 - +2.5
1,983,187 - +0.4
1,983,268 + +1.3
1,983,282 + +1.7
1,983,302 + -1.4
1,983,348 - MPMX20_01891 0.14 +0.8
1,983,358 - MPMX20_01891 0.16 -1.5
1,983,425 + MPMX20_01891 0.23 -0.3
1,983,467 + MPMX20_01891 0.27 +0.6
1,983,467 + MPMX20_01891 0.27 +0.5
1,983,467 + MPMX20_01891 0.27 +0.7
1,983,475 - MPMX20_01891 0.28 +0.4
1,983,475 - MPMX20_01891 0.28 -0.7
1,983,545 + MPMX20_01891 0.36 -0.0
1,983,589 + MPMX20_01891 0.40 -0.9
1,983,597 - MPMX20_01891 0.41 +1.7
1,983,599 + MPMX20_01891 0.41 -0.1
1,983,599 + MPMX20_01891 0.41 -0.1
1,983,599 + MPMX20_01891 0.41 -0.6
1,983,599 + MPMX20_01891 0.41 +1.3
1,983,599 + MPMX20_01891 0.41 -0.7
1,983,599 + MPMX20_01891 0.41 +0.9
1,983,607 - MPMX20_01891 0.42 -0.1
1,983,607 - MPMX20_01891 0.42 -0.6
1,983,615 + MPMX20_01891 0.43 +2.6
1,983,633 - MPMX20_01891 0.45 +0.3
1,983,653 - MPMX20_01891 0.47 +0.4
1,983,695 - MPMX20_01891 0.52 +0.1
1,983,744 - MPMX20_01891 0.57 -0.6
1,983,788 + MPMX20_01891 0.62 -2.6
1,983,809 + MPMX20_01891 0.64 -1.0
1,983,817 - MPMX20_01891 0.65 -0.3
1,983,817 - MPMX20_01891 0.65 -0.2
1,983,844 + MPMX20_01891 0.68 -1.0
1,983,847 - MPMX20_01891 0.68 -0.3
1,983,852 - MPMX20_01891 0.68 +0.3
1,983,852 - MPMX20_01891 0.68 +0.1
1,983,852 - MPMX20_01891 0.68 -0.4
1,983,936 + MPMX20_01891 0.77 +0.1
1,983,936 + MPMX20_01891 0.77 -1.0
1,983,952 + MPMX20_01891 0.79 +0.7
1,984,024 - MPMX20_01891 0.87 +0.1
1,984,051 - MPMX20_01891 0.90 -0.5
1,984,062 + -1.0
1,984,070 - +0.1
1,984,070 - -2.3
1,984,080 + -1.0
1,984,088 - +1.3
1,984,088 - +0.1
1,984,094 + -1.4
1,984,094 + -0.2
1,984,094 + -2.5
1,984,094 + -1.4
1,984,102 - +0.3
1,984,102 - +2.9
1,984,104 + -0.0
1,984,104 + -0.8
1,984,104 + -1.1
1,984,104 + +1.1
1,984,104 + -0.7
1,984,107 + -0.7

Or see this region's nucleotide sequence