Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01152

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01151 and MPMX20_01152 are separated by 103 nucleotidesMPMX20_01152 and MPMX20_01153 are separated by 73 nucleotidesMPMX20_01153 and MPMX20_01154 are separated by 263 nucleotides MPMX20_01151: MPMX20_01151 - HTH-type transcriptional activator RhaS, at 1,212,622 to 1,213,542 _01151 MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479 _01152 MPMX20_01153: MPMX20_01153 - HTH-type transcriptional activator RhaS, at 1,214,553 to 1,214,972 _01153 MPMX20_01154: MPMX20_01154 - Multidrug resistance protein MdtE, at 1,215,236 to 1,216,411 _01154 Position (kb) 1213 1214 1215Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1212.713 kb on + strandat 1212.734 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.882 kb on + strand, within MPMX20_01151at 1212.996 kb on + strand, within MPMX20_01151at 1213.025 kb on + strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.116 kb on - strand, within MPMX20_01151at 1213.116 kb on - strand, within MPMX20_01151at 1213.194 kb on + strand, within MPMX20_01151at 1213.194 kb on + strand, within MPMX20_01151at 1213.202 kb on - strand, within MPMX20_01151at 1213.207 kb on + strand, within MPMX20_01151at 1213.488 kb on + strandat 1213.489 kb on + strandat 1213.497 kb on - strandat 1213.506 kb on - strandat 1213.601 kb on + strandat 1213.614 kb on - strandat 1213.637 kb on - strandat 1213.713 kb on - strandat 1213.828 kb on - strand, within MPMX20_01152at 1213.854 kb on + strand, within MPMX20_01152at 1213.862 kb on - strand, within MPMX20_01152at 1213.889 kb on + strand, within MPMX20_01152at 1213.899 kb on + strand, within MPMX20_01152at 1213.923 kb on + strand, within MPMX20_01152at 1213.946 kb on + strand, within MPMX20_01152at 1213.946 kb on + strand, within MPMX20_01152at 1213.993 kb on + strand, within MPMX20_01152at 1213.995 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.013 kb on - strand, within MPMX20_01152at 1214.063 kb on - strand, within MPMX20_01152at 1214.135 kb on - strand, within MPMX20_01152at 1214.168 kb on - strand, within MPMX20_01152at 1214.416 kb on - strandat 1214.461 kb on - strandat 1214.468 kb on + strandat 1214.521 kb on + strandat 1214.575 kb on + strandat 1214.584 kb on + strandat 1214.592 kb on - strandat 1214.697 kb on + strand, within MPMX20_01153at 1214.702 kb on + strand, within MPMX20_01153at 1214.712 kb on - strand, within MPMX20_01153at 1214.827 kb on + strand, within MPMX20_01153at 1214.835 kb on - strand, within MPMX20_01153at 1214.844 kb on + strand, within MPMX20_01153at 1214.909 kb on + strand, within MPMX20_01153at 1215.029 kb on - strandat 1215.251 kb on - strandat 1215.443 kb on - strand, within MPMX20_01154

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,212,713 + -2.3
1,212,734 + MPMX20_01151 0.12 -0.0
1,212,858 + MPMX20_01151 0.26 -1.9
1,212,858 + MPMX20_01151 0.26 +0.1
1,212,858 + MPMX20_01151 0.26 +0.3
1,212,858 + MPMX20_01151 0.26 -0.9
1,212,882 + MPMX20_01151 0.28 -1.5
1,212,996 + MPMX20_01151 0.41 -1.0
1,213,025 + MPMX20_01151 0.44 -1.4
1,213,033 - MPMX20_01151 0.45 -1.4
1,213,033 - MPMX20_01151 0.45 -1.6
1,213,033 - MPMX20_01151 0.45 -1.4
1,213,116 - MPMX20_01151 0.54 +2.5
1,213,116 - MPMX20_01151 0.54 +0.6
1,213,194 + MPMX20_01151 0.62 -0.1
1,213,194 + MPMX20_01151 0.62 -0.3
1,213,202 - MPMX20_01151 0.63 -0.0
1,213,207 + MPMX20_01151 0.64 +2.5
1,213,488 + -0.8
1,213,489 + -1.1
1,213,497 - +0.2
1,213,506 - -1.4
1,213,601 + -0.6
1,213,614 - -1.5
1,213,637 - -0.8
1,213,713 - -1.2
1,213,828 - MPMX20_01152 0.22 +1.8
1,213,854 + MPMX20_01152 0.25 -0.6
1,213,862 - MPMX20_01152 0.26 -2.0
1,213,889 + MPMX20_01152 0.29 -0.5
1,213,899 + MPMX20_01152 0.30 -1.9
1,213,923 + MPMX20_01152 0.33 -1.0
1,213,946 + MPMX20_01152 0.36 +0.2
1,213,946 + MPMX20_01152 0.36 +1.3
1,213,993 + MPMX20_01152 0.42 +0.2
1,213,995 - MPMX20_01152 0.42 -1.0
1,214,001 - MPMX20_01152 0.43 +0.3
1,214,001 - MPMX20_01152 0.43 -0.3
1,214,001 - MPMX20_01152 0.43 +0.2
1,214,013 - MPMX20_01152 0.44 -1.2
1,214,063 - MPMX20_01152 0.50 +1.0
1,214,135 - MPMX20_01152 0.59 -0.0
1,214,168 - MPMX20_01152 0.63 -1.3
1,214,416 - +2.3
1,214,461 - +1.5
1,214,468 + -0.8
1,214,521 + +1.5
1,214,575 + -1.1
1,214,584 + +0.9
1,214,592 - -0.5
1,214,697 + MPMX20_01153 0.34 -0.4
1,214,702 + MPMX20_01153 0.35 +0.5
1,214,712 - MPMX20_01153 0.38 +4.3
1,214,827 + MPMX20_01153 0.65 -1.7
1,214,835 - MPMX20_01153 0.67 +0.2
1,214,844 + MPMX20_01153 0.69 +1.5
1,214,909 + MPMX20_01153 0.85 -2.1
1,215,029 - -0.5
1,215,251 - -0.3
1,215,443 - MPMX20_01154 0.18 +1.0

Or see this region's nucleotide sequence