Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01151 and MPMX20_01152 are separated by 103 nucleotides MPMX20_01152 and MPMX20_01153 are separated by 73 nucleotides MPMX20_01153 and MPMX20_01154 are separated by 263 nucleotides
MPMX20_01151: MPMX20_01151 - HTH-type transcriptional activator RhaS, at 1,212,622 to 1,213,542
_01151
MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479
_01152
MPMX20_01153: MPMX20_01153 - HTH-type transcriptional activator RhaS, at 1,214,553 to 1,214,972
_01153
MPMX20_01154: MPMX20_01154 - Multidrug resistance protein MdtE, at 1,215,236 to 1,216,411
_01154
Position (kb)
1213
1214
1215 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1212.713 kb on + strand at 1212.734 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.882 kb on + strand, within MPMX20_01151 at 1212.996 kb on + strand, within MPMX20_01151 at 1213.025 kb on + strand, within MPMX20_01151 at 1213.033 kb on - strand, within MPMX20_01151 at 1213.033 kb on - strand, within MPMX20_01151 at 1213.033 kb on - strand, within MPMX20_01151 at 1213.116 kb on - strand, within MPMX20_01151 at 1213.116 kb on - strand, within MPMX20_01151 at 1213.194 kb on + strand, within MPMX20_01151 at 1213.194 kb on + strand, within MPMX20_01151 at 1213.202 kb on - strand, within MPMX20_01151 at 1213.207 kb on + strand, within MPMX20_01151 at 1213.488 kb on + strand at 1213.489 kb on + strand at 1213.497 kb on - strand at 1213.506 kb on - strand at 1213.601 kb on + strand at 1213.614 kb on - strand at 1213.637 kb on - strand at 1213.713 kb on - strand at 1213.828 kb on - strand, within MPMX20_01152 at 1213.854 kb on + strand, within MPMX20_01152 at 1213.862 kb on - strand, within MPMX20_01152 at 1213.889 kb on + strand, within MPMX20_01152 at 1213.899 kb on + strand, within MPMX20_01152 at 1213.923 kb on + strand, within MPMX20_01152 at 1213.946 kb on + strand, within MPMX20_01152 at 1213.946 kb on + strand, within MPMX20_01152 at 1213.993 kb on + strand, within MPMX20_01152 at 1213.995 kb on - strand, within MPMX20_01152 at 1214.001 kb on - strand, within MPMX20_01152 at 1214.001 kb on - strand, within MPMX20_01152 at 1214.001 kb on - strand, within MPMX20_01152 at 1214.013 kb on - strand, within MPMX20_01152 at 1214.063 kb on - strand, within MPMX20_01152 at 1214.135 kb on - strand, within MPMX20_01152 at 1214.168 kb on - strand, within MPMX20_01152 at 1214.416 kb on - strand at 1214.461 kb on - strand at 1214.468 kb on + strand at 1214.521 kb on + strand at 1214.575 kb on + strand at 1214.584 kb on + strand at 1214.592 kb on - strand at 1214.697 kb on + strand, within MPMX20_01153 at 1214.702 kb on + strand, within MPMX20_01153 at 1214.712 kb on - strand, within MPMX20_01153 at 1214.827 kb on + strand, within MPMX20_01153 at 1214.835 kb on - strand, within MPMX20_01153 at 1214.844 kb on + strand, within MPMX20_01153 at 1214.909 kb on + strand, within MPMX20_01153 at 1215.029 kb on - strand at 1215.251 kb on - strand at 1215.443 kb on - strand, within MPMX20_01154
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,212,713 + -2.3 1,212,734 + MPMX20_01151 0.12 -0.0 1,212,858 + MPMX20_01151 0.26 -1.9 1,212,858 + MPMX20_01151 0.26 +0.1 1,212,858 + MPMX20_01151 0.26 +0.3 1,212,858 + MPMX20_01151 0.26 -0.9 1,212,882 + MPMX20_01151 0.28 -1.5 1,212,996 + MPMX20_01151 0.41 -1.0 1,213,025 + MPMX20_01151 0.44 -1.4 1,213,033 - MPMX20_01151 0.45 -1.4 1,213,033 - MPMX20_01151 0.45 -1.6 1,213,033 - MPMX20_01151 0.45 -1.4 1,213,116 - MPMX20_01151 0.54 +2.5 1,213,116 - MPMX20_01151 0.54 +0.6 1,213,194 + MPMX20_01151 0.62 -0.1 1,213,194 + MPMX20_01151 0.62 -0.3 1,213,202 - MPMX20_01151 0.63 -0.0 1,213,207 + MPMX20_01151 0.64 +2.5 1,213,488 + -0.8 1,213,489 + -1.1 1,213,497 - +0.2 1,213,506 - -1.4 1,213,601 + -0.6 1,213,614 - -1.5 1,213,637 - -0.8 1,213,713 - -1.2 1,213,828 - MPMX20_01152 0.22 +1.8 1,213,854 + MPMX20_01152 0.25 -0.6 1,213,862 - MPMX20_01152 0.26 -2.0 1,213,889 + MPMX20_01152 0.29 -0.5 1,213,899 + MPMX20_01152 0.30 -1.9 1,213,923 + MPMX20_01152 0.33 -1.0 1,213,946 + MPMX20_01152 0.36 +0.2 1,213,946 + MPMX20_01152 0.36 +1.3 1,213,993 + MPMX20_01152 0.42 +0.2 1,213,995 - MPMX20_01152 0.42 -1.0 1,214,001 - MPMX20_01152 0.43 +0.3 1,214,001 - MPMX20_01152 0.43 -0.3 1,214,001 - MPMX20_01152 0.43 +0.2 1,214,013 - MPMX20_01152 0.44 -1.2 1,214,063 - MPMX20_01152 0.50 +1.0 1,214,135 - MPMX20_01152 0.59 -0.0 1,214,168 - MPMX20_01152 0.63 -1.3 1,214,416 - +2.3 1,214,461 - +1.5 1,214,468 + -0.8 1,214,521 + +1.5 1,214,575 + -1.1 1,214,584 + +0.9 1,214,592 - -0.5 1,214,697 + MPMX20_01153 0.34 -0.4 1,214,702 + MPMX20_01153 0.35 +0.5 1,214,712 - MPMX20_01153 0.38 +4.3 1,214,827 + MPMX20_01153 0.65 -1.7 1,214,835 - MPMX20_01153 0.67 +0.2 1,214,844 + MPMX20_01153 0.69 +1.5 1,214,909 + MPMX20_01153 0.85 -2.1 1,215,029 - -0.5 1,215,251 - -0.3 1,215,443 - MPMX20_01154 0.18 +1.0
Or see this region's nucleotide sequence