Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01096

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01095 and MPMX20_01096 are separated by 71 nucleotidesMPMX20_01096 and MPMX20_01097 are separated by 84 nucleotides MPMX20_01095: MPMX20_01095 - hypothetical protein, at 1,155,338 to 1,156,483 _01095 MPMX20_01096: MPMX20_01096 - tRNA 2-selenouridine synthase, at 1,156,555 to 1,157,625 _01096 MPMX20_01097: MPMX20_01097 - N5-carboxyaminoimidazole ribonucleotide synthase, at 1,157,710 to 1,158,777 _01097 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 1155.629 kb on - strand, within MPMX20_01095at 1155.629 kb on - strand, within MPMX20_01095at 1155.648 kb on - strand, within MPMX20_01095at 1155.650 kb on - strand, within MPMX20_01095at 1155.650 kb on - strand, within MPMX20_01095at 1155.678 kb on - strand, within MPMX20_01095at 1155.706 kb on + strand, within MPMX20_01095at 1155.706 kb on + strand, within MPMX20_01095at 1155.707 kb on - strand, within MPMX20_01095at 1155.714 kb on - strand, within MPMX20_01095at 1155.714 kb on - strand, within MPMX20_01095at 1155.714 kb on - strand, within MPMX20_01095at 1155.724 kb on - strand, within MPMX20_01095at 1155.738 kb on - strand, within MPMX20_01095at 1155.738 kb on - strand, within MPMX20_01095at 1155.743 kb on - strand, within MPMX20_01095at 1155.744 kb on - strand, within MPMX20_01095at 1155.755 kb on + strand, within MPMX20_01095at 1155.760 kb on + strand, within MPMX20_01095at 1155.768 kb on - strand, within MPMX20_01095at 1155.784 kb on - strand, within MPMX20_01095at 1155.827 kb on + strand, within MPMX20_01095at 1155.834 kb on - strand, within MPMX20_01095at 1155.834 kb on - strand, within MPMX20_01095at 1155.834 kb on - strand, within MPMX20_01095at 1155.841 kb on + strand, within MPMX20_01095at 1155.851 kb on + strand, within MPMX20_01095at 1155.953 kb on - strand, within MPMX20_01095at 1156.015 kb on + strand, within MPMX20_01095at 1156.030 kb on + strand, within MPMX20_01095at 1156.048 kb on + strand, within MPMX20_01095at 1156.051 kb on - strand, within MPMX20_01095at 1156.057 kb on - strand, within MPMX20_01095at 1156.137 kb on - strand, within MPMX20_01095at 1156.137 kb on - strand, within MPMX20_01095at 1156.137 kb on - strand, within MPMX20_01095at 1156.144 kb on + strand, within MPMX20_01095at 1156.249 kb on - strand, within MPMX20_01095at 1156.285 kb on + strand, within MPMX20_01095at 1156.290 kb on + strand, within MPMX20_01095at 1156.306 kb on + strand, within MPMX20_01095at 1156.314 kb on - strand, within MPMX20_01095at 1156.314 kb on - strand, within MPMX20_01095at 1156.385 kb on - strandat 1156.477 kb on + strandat 1156.499 kb on + strandat 1156.501 kb on - strandat 1156.524 kb on + strandat 1156.626 kb on + strandat 1156.634 kb on + strandat 1156.642 kb on - strandat 1156.668 kb on + strand, within MPMX20_01096at 1156.676 kb on - strand, within MPMX20_01096at 1156.724 kb on + strand, within MPMX20_01096at 1156.732 kb on - strand, within MPMX20_01096at 1156.757 kb on - strand, within MPMX20_01096at 1156.772 kb on - strand, within MPMX20_01096at 1156.803 kb on + strand, within MPMX20_01096at 1156.811 kb on - strand, within MPMX20_01096at 1156.982 kb on - strand, within MPMX20_01096at 1157.084 kb on - strand, within MPMX20_01096at 1157.103 kb on - strand, within MPMX20_01096at 1157.141 kb on + strand, within MPMX20_01096at 1157.141 kb on + strand, within MPMX20_01096at 1157.232 kb on + strand, within MPMX20_01096at 1157.353 kb on - strand, within MPMX20_01096at 1157.390 kb on + strand, within MPMX20_01096at 1157.390 kb on + strand, within MPMX20_01096at 1157.416 kb on - strand, within MPMX20_01096at 1157.427 kb on + strand, within MPMX20_01096at 1157.509 kb on - strand, within MPMX20_01096at 1157.581 kb on + strandat 1157.686 kb on + strandat 1157.686 kb on + strandat 1157.687 kb on - strandat 1157.694 kb on - strandat 1157.700 kb on - strandat 1157.843 kb on - strand, within MPMX20_01097at 1157.889 kb on + strand, within MPMX20_01097at 1157.997 kb on + strand, within MPMX20_01097at 1158.051 kb on - strand, within MPMX20_01097at 1158.057 kb on + strand, within MPMX20_01097at 1158.057 kb on + strand, within MPMX20_01097at 1158.144 kb on - strand, within MPMX20_01097at 1158.174 kb on + strand, within MPMX20_01097at 1158.179 kb on + strand, within MPMX20_01097at 1158.179 kb on + strand, within MPMX20_01097at 1158.187 kb on - strand, within MPMX20_01097at 1158.239 kb on - strand, within MPMX20_01097at 1158.263 kb on - strand, within MPMX20_01097at 1158.270 kb on - strand, within MPMX20_01097at 1158.299 kb on + strand, within MPMX20_01097at 1158.318 kb on + strand, within MPMX20_01097at 1158.326 kb on - strand, within MPMX20_01097at 1158.326 kb on - strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.395 kb on - strand, within MPMX20_01097at 1158.395 kb on - strand, within MPMX20_01097at 1158.609 kb on - strand, within MPMX20_01097

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,155,629 - MPMX20_01095 0.25 +2.5
1,155,629 - MPMX20_01095 0.25 +1.3
1,155,648 - MPMX20_01095 0.27 +0.2
1,155,650 - MPMX20_01095 0.27 +0.3
1,155,650 - MPMX20_01095 0.27 +1.1
1,155,678 - MPMX20_01095 0.30 -0.8
1,155,706 + MPMX20_01095 0.32 -0.7
1,155,706 + MPMX20_01095 0.32 -0.4
1,155,707 - MPMX20_01095 0.32 -0.2
1,155,714 - MPMX20_01095 0.33 +1.5
1,155,714 - MPMX20_01095 0.33 -0.5
1,155,714 - MPMX20_01095 0.33 +0.0
1,155,724 - MPMX20_01095 0.34 -0.8
1,155,738 - MPMX20_01095 0.35 +0.6
1,155,738 - MPMX20_01095 0.35 +0.6
1,155,743 - MPMX20_01095 0.35 +0.9
1,155,744 - MPMX20_01095 0.35 +0.0
1,155,755 + MPMX20_01095 0.36 -1.7
1,155,760 + MPMX20_01095 0.37 +0.1
1,155,768 - MPMX20_01095 0.38 +11.1
1,155,784 - MPMX20_01095 0.39 +0.7
1,155,827 + MPMX20_01095 0.43 +0.2
1,155,834 - MPMX20_01095 0.43 -0.3
1,155,834 - MPMX20_01095 0.43 +0.5
1,155,834 - MPMX20_01095 0.43 +0.5
1,155,841 + MPMX20_01095 0.44 -0.4
1,155,851 + MPMX20_01095 0.45 +1.0
1,155,953 - MPMX20_01095 0.54 +0.2
1,156,015 + MPMX20_01095 0.59 -0.2
1,156,030 + MPMX20_01095 0.60 -0.7
1,156,048 + MPMX20_01095 0.62 -1.3
1,156,051 - MPMX20_01095 0.62 +0.9
1,156,057 - MPMX20_01095 0.63 +2.3
1,156,137 - MPMX20_01095 0.70 -0.2
1,156,137 - MPMX20_01095 0.70 -1.8
1,156,137 - MPMX20_01095 0.70 -0.8
1,156,144 + MPMX20_01095 0.70 -0.7
1,156,249 - MPMX20_01095 0.79 -1.4
1,156,285 + MPMX20_01095 0.83 -0.6
1,156,290 + MPMX20_01095 0.83 +0.6
1,156,306 + MPMX20_01095 0.84 +0.2
1,156,314 - MPMX20_01095 0.85 +0.7
1,156,314 - MPMX20_01095 0.85 -0.8
1,156,385 - +0.4
1,156,477 + -0.9
1,156,499 + -1.1
1,156,501 - -1.2
1,156,524 + -0.2
1,156,626 + -2.0
1,156,634 + -1.4
1,156,642 - -0.6
1,156,668 + MPMX20_01096 0.11 -0.3
1,156,676 - MPMX20_01096 0.11 -1.4
1,156,724 + MPMX20_01096 0.16 -0.7
1,156,732 - MPMX20_01096 0.17 -1.0
1,156,757 - MPMX20_01096 0.19 -0.3
1,156,772 - MPMX20_01096 0.20 -0.3
1,156,803 + MPMX20_01096 0.23 +0.2
1,156,811 - MPMX20_01096 0.24 -0.8
1,156,982 - MPMX20_01096 0.40 -1.5
1,157,084 - MPMX20_01096 0.49 -2.5
1,157,103 - MPMX20_01096 0.51 -1.4
1,157,141 + MPMX20_01096 0.55 -1.0
1,157,141 + MPMX20_01096 0.55 -0.7
1,157,232 + MPMX20_01096 0.63 -1.6
1,157,353 - MPMX20_01096 0.75 -1.0
1,157,390 + MPMX20_01096 0.78 -0.7
1,157,390 + MPMX20_01096 0.78 -0.1
1,157,416 - MPMX20_01096 0.80 -0.3
1,157,427 + MPMX20_01096 0.81 -0.2
1,157,509 - MPMX20_01096 0.89 -1.1
1,157,581 + +0.5
1,157,686 + -3.0
1,157,686 + -0.5
1,157,687 - -1.0
1,157,694 - +1.5
1,157,700 - +0.2
1,157,843 - MPMX20_01097 0.12 -1.4
1,157,889 + MPMX20_01097 0.17 -2.1
1,157,997 + MPMX20_01097 0.27 -0.1
1,158,051 - MPMX20_01097 0.32 -0.7
1,158,057 + MPMX20_01097 0.32 -1.7
1,158,057 + MPMX20_01097 0.32 -0.7
1,158,144 - MPMX20_01097 0.41 +1.1
1,158,174 + MPMX20_01097 0.43 -0.6
1,158,179 + MPMX20_01097 0.44 +0.9
1,158,179 + MPMX20_01097 0.44 -1.0
1,158,187 - MPMX20_01097 0.45 -1.5
1,158,239 - MPMX20_01097 0.50 -1.6
1,158,263 - MPMX20_01097 0.52 -1.0
1,158,270 - MPMX20_01097 0.52 -1.4
1,158,299 + MPMX20_01097 0.55 -2.7
1,158,318 + MPMX20_01097 0.57 -0.8
1,158,326 - MPMX20_01097 0.58 -1.0
1,158,326 - MPMX20_01097 0.58 -1.1
1,158,387 + MPMX20_01097 0.63 -0.7
1,158,387 + MPMX20_01097 0.63 -2.1
1,158,387 + MPMX20_01097 0.63 +2.9
1,158,395 - MPMX20_01097 0.64 -1.3
1,158,395 - MPMX20_01097 0.64 +1.5
1,158,609 - MPMX20_01097 0.84 -1.4

Or see this region's nucleotide sequence