Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01914

Experiment: M9 plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01913 and MPMX20_01914 overlap by 34 nucleotidesMPMX20_01914 and MPMX20_01915 overlap by 8 nucleotidesMPMX20_01915 and MPMX20_01916 overlap by 1 nucleotides MPMX20_01913: MPMX20_01913 - HTH-type transcriptional regulator GltC, at 2,004,161 to 2,005,084 _01913 MPMX20_01914: MPMX20_01914 - Hemin import ATP-binding protein HmuV, at 2,005,051 to 2,005,830 _01914 MPMX20_01915: MPMX20_01915 - Hemin transport system permease protein HmuU, at 2,005,823 to 2,006,815 _01915 MPMX20_01916: MPMX20_01916 - Hemin-binding periplasmic protein HmuT, at 2,006,815 to 2,007,636 _01916 Position (kb) 2005 2006Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2004.051 kb on + strandat 2004.059 kb on - strandat 2004.210 kb on - strandat 2004.271 kb on + strand, within MPMX20_01913at 2004.313 kb on + strand, within MPMX20_01913at 2004.338 kb on + strand, within MPMX20_01913at 2004.396 kb on + strand, within MPMX20_01913at 2004.413 kb on + strand, within MPMX20_01913at 2004.428 kb on - strand, within MPMX20_01913at 2004.571 kb on + strand, within MPMX20_01913at 2004.751 kb on - strand, within MPMX20_01913at 2004.754 kb on + strand, within MPMX20_01913at 2004.754 kb on + strand, within MPMX20_01913at 2004.790 kb on + strand, within MPMX20_01913at 2004.798 kb on - strand, within MPMX20_01913at 2004.855 kb on - strand, within MPMX20_01913at 2005.018 kb on + strandat 2005.092 kb on - strandat 2005.100 kb on + strandat 2005.100 kb on + strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.141 kb on + strand, within MPMX20_01914at 2005.216 kb on - strand, within MPMX20_01914at 2005.325 kb on + strand, within MPMX20_01914at 2005.370 kb on + strand, within MPMX20_01914at 2005.378 kb on - strand, within MPMX20_01914at 2005.510 kb on + strand, within MPMX20_01914at 2005.525 kb on + strand, within MPMX20_01914at 2005.533 kb on - strand, within MPMX20_01914at 2005.665 kb on + strand, within MPMX20_01914at 2005.676 kb on + strand, within MPMX20_01914at 2005.748 kb on + strand, within MPMX20_01914at 2005.776 kb on - strandat 2005.829 kb on - strandat 2005.834 kb on - strandat 2005.880 kb on - strandat 2005.962 kb on + strand, within MPMX20_01915at 2005.972 kb on + strand, within MPMX20_01915at 2006.079 kb on + strand, within MPMX20_01915at 2006.139 kb on + strand, within MPMX20_01915at 2006.189 kb on + strand, within MPMX20_01915at 2006.198 kb on - strand, within MPMX20_01915at 2006.220 kb on - strand, within MPMX20_01915at 2006.245 kb on + strand, within MPMX20_01915at 2006.245 kb on + strand, within MPMX20_01915at 2006.245 kb on + strand, within MPMX20_01915at 2006.253 kb on - strand, within MPMX20_01915at 2006.253 kb on - strand, within MPMX20_01915at 2006.259 kb on + strand, within MPMX20_01915at 2006.259 kb on + strand, within MPMX20_01915at 2006.276 kb on - strand, within MPMX20_01915at 2006.281 kb on - strand, within MPMX20_01915at 2006.462 kb on + strand, within MPMX20_01915at 2006.528 kb on + strand, within MPMX20_01915at 2006.536 kb on - strand, within MPMX20_01915at 2006.604 kb on - strand, within MPMX20_01915at 2006.675 kb on + strand, within MPMX20_01915at 2006.747 kb on - strandat 2006.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus lautus TBS_090
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2,004,051 + -0.2
2,004,059 - -0.9
2,004,210 - -1.2
2,004,271 + MPMX20_01913 0.12 +0.0
2,004,313 + MPMX20_01913 0.16 +0.8
2,004,338 + MPMX20_01913 0.19 -1.8
2,004,396 + MPMX20_01913 0.25 +1.5
2,004,413 + MPMX20_01913 0.27 +2.1
2,004,428 - MPMX20_01913 0.29 -2.2
2,004,571 + MPMX20_01913 0.44 +0.3
2,004,751 - MPMX20_01913 0.64 -0.4
2,004,754 + MPMX20_01913 0.64 -0.7
2,004,754 + MPMX20_01913 0.64 +1.2
2,004,790 + MPMX20_01913 0.68 +1.1
2,004,798 - MPMX20_01913 0.69 +0.5
2,004,855 - MPMX20_01913 0.75 +0.5
2,005,018 + +0.6
2,005,092 - -0.7
2,005,100 + +0.2
2,005,100 + +1.4
2,005,108 - -1.6
2,005,108 - +4.7
2,005,108 - +2.1
2,005,108 - +1.5
2,005,108 - -2.5
2,005,108 - -3.3
2,005,141 + MPMX20_01914 0.12 +1.4
2,005,216 - MPMX20_01914 0.21 -0.8
2,005,325 + MPMX20_01914 0.35 -2.5
2,005,370 + MPMX20_01914 0.41 -0.5
2,005,378 - MPMX20_01914 0.42 -0.5
2,005,510 + MPMX20_01914 0.59 +0.6
2,005,525 + MPMX20_01914 0.61 -3.2
2,005,533 - MPMX20_01914 0.62 +0.5
2,005,665 + MPMX20_01914 0.79 -2.1
2,005,676 + MPMX20_01914 0.80 -2.2
2,005,748 + MPMX20_01914 0.89 -3.2
2,005,776 - +0.7
2,005,829 - +0.1
2,005,834 - +1.1
2,005,880 - +0.1
2,005,962 + MPMX20_01915 0.14 +4.1
2,005,972 + MPMX20_01915 0.15 +0.5
2,006,079 + MPMX20_01915 0.26 +0.1
2,006,139 + MPMX20_01915 0.32 -2.5
2,006,189 + MPMX20_01915 0.37 +0.6
2,006,198 - MPMX20_01915 0.38 -1.1
2,006,220 - MPMX20_01915 0.40 +0.7
2,006,245 + MPMX20_01915 0.42 -0.3
2,006,245 + MPMX20_01915 0.42 +0.1
2,006,245 + MPMX20_01915 0.42 -1.1
2,006,253 - MPMX20_01915 0.43 -0.7
2,006,253 - MPMX20_01915 0.43 -0.5
2,006,259 + MPMX20_01915 0.44 -1.1
2,006,259 + MPMX20_01915 0.44 -0.2
2,006,276 - MPMX20_01915 0.46 +0.4
2,006,281 - MPMX20_01915 0.46 -0.5
2,006,462 + MPMX20_01915 0.64 +2.6
2,006,528 + MPMX20_01915 0.71 -2.6
2,006,536 - MPMX20_01915 0.72 -0.1
2,006,604 - MPMX20_01915 0.79 -2.7
2,006,675 + MPMX20_01915 0.86 +2.1
2,006,747 - +1.0
2,006,755 + +0.1

Or see this region's nucleotide sequence