Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03806 and MPMX20_03807 overlap by 1 nucleotides MPMX20_03807 and MPMX20_03808 overlap by 35 nucleotides MPMX20_03808 and MPMX20_03809 are separated by 17 nucleotides MPMX20_03809 and MPMX20_03810 are separated by 21 nucleotides
MPMX20_03806: MPMX20_03806 - hypothetical protein, at 4,012,515 to 4,013,075
_03806
MPMX20_03807: MPMX20_03807 - Putative pre-16S rRNA nuclease, at 4,013,075 to 4,013,491
_03807
MPMX20_03808: MPMX20_03808 - putative protein YggR, at 4,013,457 to 4,014,482
_03808
MPMX20_03809: MPMX20_03809 - Pyridoxal phosphate homeostasis protein, at 4,014,500 to 4,015,201
_03809
MPMX20_03810: MPMX20_03810 - hypothetical protein, at 4,015,223 to 4,015,789
_03810
Position (kb)
4013
4014
4015 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4012.478 kb on - strand at 4012.584 kb on + strand, within MPMX20_03806 at 4012.890 kb on + strand, within MPMX20_03806 at 4012.895 kb on + strand, within MPMX20_03806 at 4012.945 kb on + strand, within MPMX20_03806 at 4012.976 kb on - strand, within MPMX20_03806 at 4012.990 kb on - strand, within MPMX20_03806 at 4013.032 kb on + strand at 4013.069 kb on + strand at 4013.482 kb on + strand at 4013.482 kb on + strand at 4013.482 kb on + strand at 4013.482 kb on + strand at 4013.482 kb on + strand at 4013.490 kb on - strand at 4013.490 kb on - strand at 4013.490 kb on - strand at 4013.499 kb on + strand at 4013.530 kb on + strand at 4013.538 kb on - strand at 4013.548 kb on - strand at 4013.548 kb on - strand at 4013.553 kb on - strand at 4013.635 kb on + strand, within MPMX20_03808 at 4013.665 kb on + strand, within MPMX20_03808 at 4013.673 kb on - strand, within MPMX20_03808 at 4013.673 kb on - strand, within MPMX20_03808 at 4013.771 kb on - strand, within MPMX20_03808 at 4013.789 kb on + strand, within MPMX20_03808 at 4013.812 kb on + strand, within MPMX20_03808 at 4013.840 kb on - strand, within MPMX20_03808 at 4013.889 kb on - strand, within MPMX20_03808 at 4013.918 kb on - strand, within MPMX20_03808 at 4013.957 kb on - strand, within MPMX20_03808 at 4013.967 kb on + strand, within MPMX20_03808 at 4013.969 kb on + strand, within MPMX20_03808 at 4013.982 kb on - strand, within MPMX20_03808 at 4013.993 kb on + strand, within MPMX20_03808 at 4014.000 kb on - strand, within MPMX20_03808 at 4014.029 kb on - strand, within MPMX20_03808 at 4014.034 kb on - strand, within MPMX20_03808 at 4014.037 kb on + strand, within MPMX20_03808 at 4014.064 kb on + strand, within MPMX20_03808 at 4014.184 kb on - strand, within MPMX20_03808 at 4014.184 kb on - strand, within MPMX20_03808 at 4014.184 kb on - strand, within MPMX20_03808 at 4014.228 kb on - strand, within MPMX20_03808 at 4014.307 kb on + strand, within MPMX20_03808 at 4014.353 kb on - strand, within MPMX20_03808 at 4014.394 kb on - strand at 4014.394 kb on - strand at 4014.399 kb on - strand at 4014.399 kb on - strand at 4014.425 kb on + strand at 4014.425 kb on + strand at 4014.425 kb on + strand at 4014.425 kb on + strand at 4014.425 kb on + strand at 4014.425 kb on + strand at 4014.425 kb on + strand at 4014.433 kb on - strand at 4014.433 kb on - strand at 4014.433 kb on - strand at 4014.433 kb on - strand at 4014.446 kb on + strand at 4014.481 kb on + strand at 4014.481 kb on + strand at 4014.507 kb on + strand at 4014.515 kb on - strand at 4014.519 kb on + strand at 4014.527 kb on - strand at 4014.607 kb on + strand, within MPMX20_03809 at 4014.652 kb on + strand, within MPMX20_03809 at 4014.705 kb on + strand, within MPMX20_03809 at 4014.715 kb on + strand, within MPMX20_03809 at 4014.715 kb on + strand, within MPMX20_03809 at 4014.758 kb on - strand, within MPMX20_03809 at 4014.855 kb on + strand, within MPMX20_03809 at 4014.959 kb on + strand, within MPMX20_03809 at 4014.962 kb on - strand, within MPMX20_03809 at 4014.969 kb on + strand, within MPMX20_03809 at 4014.969 kb on + strand, within MPMX20_03809 at 4014.969 kb on + strand, within MPMX20_03809 at 4014.969 kb on + strand, within MPMX20_03809 at 4014.969 kb on + strand, within MPMX20_03809 at 4014.969 kb on + strand, within MPMX20_03809 at 4014.977 kb on - strand, within MPMX20_03809 at 4014.984 kb on + strand, within MPMX20_03809 at 4015.014 kb on - strand, within MPMX20_03809 at 4015.055 kb on - strand, within MPMX20_03809 at 4015.136 kb on + strand at 4015.146 kb on + strand at 4015.146 kb on + strand at 4015.146 kb on + strand at 4015.146 kb on + strand at 4015.146 kb on + strand at 4015.146 kb on + strand at 4015.154 kb on - strand at 4015.154 kb on - strand at 4015.228 kb on - strand at 4015.254 kb on + strand at 4015.264 kb on + strand at 4015.272 kb on - strand at 4015.279 kb on + strand at 4015.360 kb on + strand, within MPMX20_03810 at 4015.410 kb on + strand, within MPMX20_03810 at 4015.428 kb on + strand, within MPMX20_03810 at 4015.462 kb on + strand, within MPMX20_03810 at 4015.470 kb on - strand, within MPMX20_03810 at 4015.470 kb on - strand, within MPMX20_03810
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 4,012,478 - -1.8 4,012,584 + MPMX20_03806 0.12 +2.3 4,012,890 + MPMX20_03806 0.67 +0.5 4,012,895 + MPMX20_03806 0.68 -0.3 4,012,945 + MPMX20_03806 0.77 +1.3 4,012,976 - MPMX20_03806 0.82 +1.2 4,012,990 - MPMX20_03806 0.85 +0.7 4,013,032 + +1.7 4,013,069 + -3.2 4,013,482 + +0.5 4,013,482 + +0.4 4,013,482 + +1.0 4,013,482 + -0.4 4,013,482 + -0.8 4,013,490 - +0.9 4,013,490 - -0.5 4,013,490 - +1.3 4,013,499 + -1.1 4,013,530 + +1.1 4,013,538 - +0.3 4,013,548 - -1.8 4,013,548 - +0.8 4,013,553 - -2.2 4,013,635 + MPMX20_03808 0.17 -1.4 4,013,665 + MPMX20_03808 0.20 +1.1 4,013,673 - MPMX20_03808 0.21 -0.3 4,013,673 - MPMX20_03808 0.21 +1.9 4,013,771 - MPMX20_03808 0.31 -1.8 4,013,789 + MPMX20_03808 0.32 -1.3 4,013,812 + MPMX20_03808 0.35 +1.5 4,013,840 - MPMX20_03808 0.37 +1.2 4,013,889 - MPMX20_03808 0.42 +0.4 4,013,918 - MPMX20_03808 0.45 -0.5 4,013,957 - MPMX20_03808 0.49 -0.6 4,013,967 + MPMX20_03808 0.50 +0.7 4,013,969 + MPMX20_03808 0.50 -0.2 4,013,982 - MPMX20_03808 0.51 -0.9 4,013,993 + MPMX20_03808 0.52 -0.0 4,014,000 - MPMX20_03808 0.53 +1.6 4,014,029 - MPMX20_03808 0.56 -3.1 4,014,034 - MPMX20_03808 0.56 +1.4 4,014,037 + MPMX20_03808 0.57 +0.3 4,014,064 + MPMX20_03808 0.59 -0.0 4,014,184 - MPMX20_03808 0.71 +1.2 4,014,184 - MPMX20_03808 0.71 +1.0 4,014,184 - MPMX20_03808 0.71 +1.3 4,014,228 - MPMX20_03808 0.75 -1.6 4,014,307 + MPMX20_03808 0.83 +0.6 4,014,353 - MPMX20_03808 0.87 -0.2 4,014,394 - -2.1 4,014,394 - -3.4 4,014,399 - -3.0 4,014,399 - +0.7 4,014,425 + +2.3 4,014,425 + +0.4 4,014,425 + -3.0 4,014,425 + -0.7 4,014,425 + -0.5 4,014,425 + +1.3 4,014,425 + +1.3 4,014,433 - +0.6 4,014,433 - -1.5 4,014,433 - -0.5 4,014,433 - -3.0 4,014,446 + +0.0 4,014,481 + +0.8 4,014,481 + -3.5 4,014,507 + -3.4 4,014,515 - +0.7 4,014,519 + +0.0 4,014,527 - -0.2 4,014,607 + MPMX20_03809 0.15 -1.1 4,014,652 + MPMX20_03809 0.22 +0.6 4,014,705 + MPMX20_03809 0.29 -0.5 4,014,715 + MPMX20_03809 0.31 -2.7 4,014,715 + MPMX20_03809 0.31 -3.2 4,014,758 - MPMX20_03809 0.37 -2.0 4,014,855 + MPMX20_03809 0.51 +0.2 4,014,959 + MPMX20_03809 0.65 -2.8 4,014,962 - MPMX20_03809 0.66 -1.1 4,014,969 + MPMX20_03809 0.67 -2.8 4,014,969 + MPMX20_03809 0.67 -0.5 4,014,969 + MPMX20_03809 0.67 +1.3 4,014,969 + MPMX20_03809 0.67 -1.7 4,014,969 + MPMX20_03809 0.67 +0.3 4,014,969 + MPMX20_03809 0.67 -0.4 4,014,977 - MPMX20_03809 0.68 -0.3 4,014,984 + MPMX20_03809 0.69 +1.2 4,015,014 - MPMX20_03809 0.73 -0.3 4,015,055 - MPMX20_03809 0.79 -3.1 4,015,136 + +2.0 4,015,146 + -1.1 4,015,146 + +0.7 4,015,146 + +0.8 4,015,146 + -0.5 4,015,146 + -2.1 4,015,146 + -0.6 4,015,154 - -2.3 4,015,154 - -1.8 4,015,228 - -1.4 4,015,254 + -1.3 4,015,264 + -0.5 4,015,272 - -0.5 4,015,279 + +0.0 4,015,360 + MPMX20_03810 0.24 -2.0 4,015,410 + MPMX20_03810 0.33 +0.2 4,015,428 + MPMX20_03810 0.36 -1.5 4,015,462 + MPMX20_03810 0.42 +1.6 4,015,470 - MPMX20_03810 0.44 +1.9 4,015,470 - MPMX20_03810 0.44 +1.1
Or see this region's nucleotide sequence