Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15760

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15765 and HMPREF1058_RS15760 are separated by 43 nucleotidesHMPREF1058_RS15760 and HMPREF1058_RS15755 are separated by 368 nucleotides HMPREF1058_RS15765: HMPREF1058_RS15765 - ABC transporter permease, at 841,614 to 842,906 _RS15765 HMPREF1058_RS15760: HMPREF1058_RS15760 - ABC transporter ATP-binding protein, at 842,950 to 843,615 _RS15760 HMPREF1058_RS15755: HMPREF1058_RS15755 - HlyD family efflux transporter periplasmic adaptor subunit, at 843,984 to 845,231 _RS15755 Position (kb) 842 843 844Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 841.979 kb on + strand, within HMPREF1058_RS15765at 842.104 kb on + strand, within HMPREF1058_RS15765at 842.129 kb on + strand, within HMPREF1058_RS15765at 842.151 kb on - strand, within HMPREF1058_RS15765at 842.157 kb on - strand, within HMPREF1058_RS15765at 842.158 kb on + strand, within HMPREF1058_RS15765at 842.265 kb on - strand, within HMPREF1058_RS15765at 842.330 kb on + strand, within HMPREF1058_RS15765at 842.331 kb on - strand, within HMPREF1058_RS15765at 842.529 kb on - strand, within HMPREF1058_RS15765at 842.643 kb on - strand, within HMPREF1058_RS15765at 842.644 kb on + strand, within HMPREF1058_RS15765at 842.644 kb on + strand, within HMPREF1058_RS15765at 842.646 kb on + strand, within HMPREF1058_RS15765at 842.646 kb on + strand, within HMPREF1058_RS15765at 842.712 kb on - strand, within HMPREF1058_RS15765at 842.714 kb on + strand, within HMPREF1058_RS15765at 842.715 kb on - strand, within HMPREF1058_RS15765at 842.720 kb on + strand, within HMPREF1058_RS15765at 842.721 kb on - strand, within HMPREF1058_RS15765at 842.723 kb on - strand, within HMPREF1058_RS15765at 842.788 kb on - strandat 842.923 kb on + strandat 842.948 kb on - strandat 843.166 kb on + strand, within HMPREF1058_RS15760at 843.213 kb on + strand, within HMPREF1058_RS15760at 843.285 kb on + strand, within HMPREF1058_RS15760at 843.286 kb on - strand, within HMPREF1058_RS15760at 843.330 kb on + strand, within HMPREF1058_RS15760at 843.480 kb on + strand, within HMPREF1058_RS15760at 843.481 kb on - strand, within HMPREF1058_RS15760at 843.481 kb on - strand, within HMPREF1058_RS15760at 843.652 kb on + strandat 843.652 kb on + strandat 843.653 kb on - strandat 843.729 kb on + strandat 843.730 kb on - strandat 843.772 kb on + strandat 843.823 kb on + strandat 843.854 kb on + strandat 843.854 kb on + strandat 843.870 kb on + strandat 843.939 kb on - strandat 843.939 kb on - strandat 843.942 kb on + strandat 843.974 kb on + strandat 844.016 kb on - strandat 844.089 kb on - strandat 844.172 kb on - strand, within HMPREF1058_RS15755at 844.226 kb on - strand, within HMPREF1058_RS15755at 844.227 kb on + strand, within HMPREF1058_RS15755at 844.228 kb on - strand, within HMPREF1058_RS15755at 844.228 kb on - strand, within HMPREF1058_RS15755at 844.265 kb on + strand, within HMPREF1058_RS15755at 844.282 kb on - strand, within HMPREF1058_RS15755at 844.308 kb on - strand, within HMPREF1058_RS15755at 844.329 kb on + strand, within HMPREF1058_RS15755at 844.400 kb on - strand, within HMPREF1058_RS15755at 844.400 kb on - strand, within HMPREF1058_RS15755at 844.411 kb on - strand, within HMPREF1058_RS15755at 844.452 kb on - strand, within HMPREF1058_RS15755at 844.493 kb on + strand, within HMPREF1058_RS15755at 844.497 kb on + strand, within HMPREF1058_RS15755at 844.498 kb on - strand, within HMPREF1058_RS15755at 844.498 kb on - strand, within HMPREF1058_RS15755at 844.501 kb on + strand, within HMPREF1058_RS15755at 844.502 kb on - strand, within HMPREF1058_RS15755at 844.505 kb on + strand, within HMPREF1058_RS15755at 844.506 kb on - strand, within HMPREF1058_RS15755

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3
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841,979 + HMPREF1058_RS15765 0.28 -0.0
842,104 + HMPREF1058_RS15765 0.38 -0.3
842,129 + HMPREF1058_RS15765 0.40 +0.7
842,151 - HMPREF1058_RS15765 0.42 +0.7
842,157 - HMPREF1058_RS15765 0.42 +0.4
842,158 + HMPREF1058_RS15765 0.42 +0.3
842,265 - HMPREF1058_RS15765 0.50 +0.3
842,330 + HMPREF1058_RS15765 0.55 +0.4
842,331 - HMPREF1058_RS15765 0.55 +0.5
842,529 - HMPREF1058_RS15765 0.71 +2.5
842,643 - HMPREF1058_RS15765 0.80 +0.1
842,644 + HMPREF1058_RS15765 0.80 +0.6
842,644 + HMPREF1058_RS15765 0.80 +0.6
842,646 + HMPREF1058_RS15765 0.80 -1.9
842,646 + HMPREF1058_RS15765 0.80 -0.0
842,712 - HMPREF1058_RS15765 0.85 +1.3
842,714 + HMPREF1058_RS15765 0.85 +0.5
842,715 - HMPREF1058_RS15765 0.85 -1.7
842,720 + HMPREF1058_RS15765 0.86 +0.3
842,721 - HMPREF1058_RS15765 0.86 +0.9
842,723 - HMPREF1058_RS15765 0.86 -0.3
842,788 - -2.3
842,923 + -1.0
842,948 - -1.1
843,166 + HMPREF1058_RS15760 0.32 +0.7
843,213 + HMPREF1058_RS15760 0.39 +0.5
843,285 + HMPREF1058_RS15760 0.50 -0.2
843,286 - HMPREF1058_RS15760 0.50 -1.3
843,330 + HMPREF1058_RS15760 0.57 -0.6
843,480 + HMPREF1058_RS15760 0.80 -1.6
843,481 - HMPREF1058_RS15760 0.80 -0.1
843,481 - HMPREF1058_RS15760 0.80 -3.1
843,652 + +0.8
843,652 + +2.8
843,653 - +0.7
843,729 + -0.2
843,730 - +0.2
843,772 + +0.6
843,823 + -0.1
843,854 + +0.9
843,854 + +1.2
843,870 + +0.3
843,939 - +0.4
843,939 - -0.3
843,942 + -1.1
843,974 + +1.3
844,016 - -0.5
844,089 - -0.8
844,172 - HMPREF1058_RS15755 0.15 -3.8
844,226 - HMPREF1058_RS15755 0.19 -3.1
844,227 + HMPREF1058_RS15755 0.19 -1.9
844,228 - HMPREF1058_RS15755 0.20 -2.0
844,228 - HMPREF1058_RS15755 0.20 -2.3
844,265 + HMPREF1058_RS15755 0.23 -3.1
844,282 - HMPREF1058_RS15755 0.24 -0.5
844,308 - HMPREF1058_RS15755 0.26 -3.5
844,329 + HMPREF1058_RS15755 0.28 -2.6
844,400 - HMPREF1058_RS15755 0.33 -0.9
844,400 - HMPREF1058_RS15755 0.33 +0.4
844,411 - HMPREF1058_RS15755 0.34 -0.3
844,452 - HMPREF1058_RS15755 0.38 -2.6
844,493 + HMPREF1058_RS15755 0.41 -1.9
844,497 + HMPREF1058_RS15755 0.41 -1.3
844,498 - HMPREF1058_RS15755 0.41 -1.9
844,498 - HMPREF1058_RS15755 0.41 -0.5
844,501 + HMPREF1058_RS15755 0.41 -2.4
844,502 - HMPREF1058_RS15755 0.42 -0.3
844,505 + HMPREF1058_RS15755 0.42 +0.7
844,506 - HMPREF1058_RS15755 0.42 -2.0

Or see this region's nucleotide sequence